Analytical Currents: Solid-phase version of ICAT proteomics method

Jul 1, 2002 - Analytical Currents: Solid-phase version of ICAT proteomics method. Anal. Chem. , 2002, 74 (13), pp 363 A–363 A. DOI: 10.1021/ac022052...
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Small Paul ion trap big hit Smaller can be better! A. Chutjian and O. J. Orient at the California Institute of Technology introduce a new highresolution Paul ion trap mass spectrometer that’s diminutive in size (r0 = 10 mm) but big on sensitivity and results. With further development, they see such an instrument being used in harsh environments, such as under the sea, on the surface of other planets or asteroids, or in a spacecraft to monitor air during long flights to Mars or beyond. Chutjian and Orient scaled the lenses, trap, and detector of the new instrument to maintain both the required dimensional accuracy for high resolution and the trapping volume for high sensitivity and dynamic range. The instrument has a resolution of m/m = 324, which is limited by the machining accuracy of the trap. It has a demonstrated mass range of 1–300 u and a sensitivity for N2 of 2  1014 counts/Torr s or 500 pptr in a typical vacuum of 10–5 Torr—an improvement of ~100 times over an earlier miniature quadrupole mass spectrometer array. The researchers say that such a trap is potentially useful for harsh environments because it operates in a radio-frequency-only mode; no direct current is

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required. Trapping is performed within the well depth of the dynamic radio frequency potential, and no cooling gas is needed. Furthermore, ionization of the

room-temperature gas within the trap is carried out with an electron beam traversing the trapping volume. (Rev. Sci. Instrum. 2002, 73, 2157–2160)

Solid-phase version of ICAT proteomics method Ruedi Aebersold and colleagues at the Insti-

the hydrogen (“light”) tag; a second sam-

tute for Systems Biology update the isotope-

ple uses beads bearing the deuterium

ments using Saccharomyces cerevisiae,

coded affinity tag (ICAT) method for quanti-

(“heavy”) tag. Cysteinyl peptides are cap-

the solid-phase technique identified and

tative proteomics. The new approach uses a

tured on the solid phase. The beads from

quantified more proteins than the standard

solid-phase capture-and-release process, in

both samples are combined, washed, and

ICAT method, the researchers say. In addi-

which a photocleavable linker is attached to

exposed to UV light to cleave the linkers.

tion, the new method permits stringent

aminopropyl-coated glass beads. An isotope

The recovered tagged peptides are then

wash conditions to remove noncysteinyl

tag containing seven hydrogen or deuterium

analyzed by µLC/MS/MS to determine the

peptides and requires less sample han-

atoms is attached to the opposite end of the

sequence, and the relative abundance of

dling, because the cysteinyl peptides are

linker and capped with a sulfhydryl-specific

each peptide is determined by comparing

isolated and the isotopes are incorporated

iodoacetyl group.

the peak intensities for the light- and

in a single step. (Nat. Biotechnol. 2002, 20,

heavy-tagged versions.

512–515)

One protein sample uses beads bearing

In both small- and large-scale experi-

J U LY 1 , 2 0 0 2 / A N A LY T I C A L C H E M I S T R Y

363 A