Carbenes may be key to enzyme's power - C&EN Global Enterprise

May 12, 1997 - Carbene intermediates in a nonpolar environment may explain how one of the world's most powerful enzymes works, say chemists at the ...
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Carbenes may be key to enzyme's power Carbene intermediates in a nonpolar en­ vironment may explain how one of the world's most powerful enzymes works, say chemists at the University of Califor­ nia, Los Angeles. Orotidine monophosphate decarbox­ ylase is the most proficient enzyme known. It catalyzes a simple but impor­ tant reaction, decarboxylation of oroti­ dine 5/-monophosphate to uridine 5'monophosphate, a key ingredient in nu­ cleic acid biosynthesis. The rate constant for reaction with the enzyme is 1023 times greater than for the uncatalyzed reaction. Scientists have been seeking to explain how the enzyme achieves such accelera­ tion. The fact that cofactors or metal ions aren't involved makes the problem even more intriguing. No crystal structure exists yet for the enzyme, but that hasn't stopped the search for answers. Now, using quantum mechanical the­ ory, National Institutes of Health post­ doctoral fellow Jeehiun K. Lee and chem­ istry professor Kendall N. Houk predict the mechanism involves a carbene inter­ mediate. It "represents a previously un­ recognized mode of enzymatic activity" for the enzyme, they write in Science [276,942(1997)]. The astounding proficiency of the en­ zyme was first shown experimentally in 1995 by Richard V. Wolfenden, a bio­ chemistry professor at the University of North Carolina, Chapel Hill. The UCLA chemists, Wolfenden says, "suggest an energetically plausible mechanism by which the reaction might be catalyzed in a nonpolar microenvironment." Lee and Houk's proposed mechanism for "this central biological reaction should influence the design of inhibitors and im­ prove the understanding of the environ­ ment at the enzyme's active site," says chemistry professor Peter Beak at the Uni­ versity of Illinois, Urbana-Champaign, who had proposed a different mechanism for the enzyme in 1976. On the basis of theoretical calcula­ tions, Lee and Houk suggest that proton transfer from the amino group of lysine93 of the enzyme to the oxygen at posi­ tion 4 of the substrate occurs simulta­ neously with decarboxylation, yielding a carbene. "It is ironic that a carbene would be the key intermediate involved in the catalyzed reaction," Houk tells C&EN, because carbenes usually are un12 MAY 12, 1997 C&EN

When oxygen at position 4 (arrow at left) in orotidine S-monophosphate is protonated by lysine-93 in a nonpolar cavity of the enzyme, decarboxylation occurs simultaneously (center) to produce a resonance-stabilized carbene (right).

stable. But in this case, explains Lee, the carbene is stabilized by resonance. To study the reaction, Lee used a high-end, reliable level of quantum me­ chanical theory to calculate very accu­ rately the energetics of the uncatalyzed reaction. Then she tested various catalyt­ ic mechanisms, including solvent effects. What the researchers found about sol­ vent effects is "of even more general in­ terest," Lee notes. Because the enzyme's proton donor, protonated lysine, is a weak acid, protonation—and the accom­ panying carbene formation that results in the dramatic acceleration of the reac­ tion—occurs only in an environment of low polarity. Water is too polar for catal­ ysis by such weak acids to occur, Lee's work shows. That means the enzyme pocket where the reaction occurs must be nonpolar, says Houk. "In a nonpolar cavity, unusu­ al and unanticipated things happen," he adds. Lee will continue to examine such solvent effects to explain how enzymes work after she joins Rutgers University,

Lee: resonance stabilizes carbene

New Brunswick, N.J., as an assistant pro­ fessor of chemistry this fall. Lee and Houk are "courageous calculational chemists" for going beyond "pro­ viding a correlation or analysis of estab­ lished chemical fact to making a predic­ tion about a complex biological reaction," says Beak. "It will be interesting to see whether their novel mechanism withstands the challenge of structural analysis," adds Wolfenden. Maureen Rouhi

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