Citrus mangshanensis pollen confers a xenia effect on linalool oxide

Aug 5, 2019 - The aroma quality of citrus fruit is determined by volatiles that are present at extremely low levels in the citrus fruit juice sacs, it...
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Agricultural and Environmental Chemistry

Citrus mangshanensis pollen confers a xenia effect on linalool oxide accumulation in pummelo fruit by enhancing the expression of a cytochrome P450 78A7 gene CitLO1 haipeng zhang, Cuihua Liu, Jia-Long Yao, Cecilia Hong Deng, Shilin Chen, Jiajing Chen, Zhenhua Wang, Qiaoming Yu, Yunjiang Cheng, and Juan Xu J. Agric. Food Chem., Just Accepted Manuscript • DOI: 10.1021/acs.jafc.9b03158 • Publication Date (Web): 05 Aug 2019 Downloaded from pubs.acs.org on August 10, 2019

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Citrus mangshanensis pollen confers a xenia effect on linalool oxide accumulation in

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pummelo fruit by enhancing the expression of a cytochrome P450 78A7 gene CitLO1

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Authors: Haipeng Zhang1#, Cuihua Liu2#, Jia-Long Yao3, Cecilia Hong Deng3, Shilin Chen4,

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Jiajing Chen1, Zhenhua Wang1, Qiaoming Yu1, Yunjiang Cheng1, Juan Xu1*

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1Key

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and Forestry, Huazhong Agricultural University, Wuhan 430070, PR China

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2College

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3The

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1142, New Zealand

Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture

of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, PR China

New Zealand Institute for Plant & Food Research Limited, Private Bag 92169, Auckland

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4Agricultural

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#Contribute

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Authors and Emails addresses:

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Haipeng Zhang: [email protected];

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Cuihua Liu: [email protected];

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Jia-Long Yao: [email protected];

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Cecilia Hong Deng: [email protected];

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Shilin Chen: [email protected];

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Jiajing Chen: [email protected];

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Zhenhua Wang: [email protected];

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Qiaoming Yu: [email protected];

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Yunjiang Cheng: [email protected];

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Juan Xu: [email protected];

Bureau of Yichang District, Yiling 443310, PR China

equally to this article.

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*Corresponding author:

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Juan Xu Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of

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Horticulture and Forestry, Huazhong Agricultural University, Wuhan 430070, PR China

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Tel: +86-027-87286965

E-mail: [email protected];

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Abstract The aroma quality of citrus fruit is determined by volatiles that are present at extremely

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low levels in the citrus fruit juice sacs, it can be greatly improved by increasing volatiles. In this

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study, we showed that the contents of cis- and trans-linalool oxides were significantly increased in

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the juice sacs of three pummelos artificially pollinated with the Citrus mangshanensis (MS) pollen.

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A novel cytochrome P450 78A7 gene (CitLO1), was significantly upregulated in the juice sacs of

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‘Huanong Red’ pummelo pollinated with MS pollen in comparison with open pollination.

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Comparing to wild type tobacco Bright-Yellow2 cells, transgenic cells over-expressing CitLO1

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promoted 3–4 folds more conversion of (–)-linalool to cis- and trans-linalool oxides. Overall, our

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results suggest that MS pollen has a xenia effect on pummelo fruit aroma quality, and CitLO1 is a

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linalool oxide synthase gene that played an important role in the xenia effect.

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KEYWORDS: Volatile; Citrus mangshanensis; Pummelo (C. grandis); Xenia effect; CitLO1;

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Linalool oxides

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INTRODUCTION

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Citrus is an important fruit crop in the world, and is mainly consumed as fresh fruit although

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it may be processed into canned and juice-based products. Citrus fruit contain rich bioactive

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compounds such as carotenoids, flavonoids, limonoids, nomilins, organic acids, soluble sugars and

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volatile compounds.1-4 These bioactive compounds can affect the quality of fruit and the processed

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products. Organic acids and soluble sugars contribute to the taste, while flavonoids, volatiles

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and/or carotenoids contribute to the taste, flavor and also color of fruit.

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The content of volatiles varies largely among different tissues in various citrus germplasms.

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They are the highest amount in fruit peels, followed by the leaves, flowers and fruit juice sacs.4 In

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our previous study, as many as 198 volatile compounds were identified in citrus.4 However, most

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of volatile compounds are as background aroma, only one or a few volatile compounds are mainly

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responsible for the characteristic aroma trait of citrus. For example, d-limonene, the most

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abundant compound in most citrus germplasms, may serve as the background aroma.5 Cis- and

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trans-linalool oxides are the main characteristic aroma compounds in C.mangshanensis (MS) fruit.

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Valencene together with ethyl butyrate and hexyl hexanoate may be the characteristic aroma

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compounds and are specifically accumulated in sweet oranges.6,7 β-pinene, γ-terpinene, linalyl

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acetate and linalool can largely reconstruct the aroma of lemon.8 β-citronellal, nerol acetate and

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geranyl acetate contribute to the characteristic aroma of lime fruit.9 Linalool and its derivatives are

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mainly responsible for the sweet and fragrant aroma of Miyamoto Satsuma mandarin (C.

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reticulata).10 Notably, some terpenoid derivatives (terpenoid alcohols, terpenoid aldehydes and

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terpenoid oxides) at relatively low contents may also play important roles in the characteristic

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aroma of citrus fruit.5,6,10

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Monoterpenes and sesquiterpenes are important volatile compounds accumulated in citrus

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fruit, and are mainly biosynthesized via 2-C-methyl-d-erythritol 4-phosphate (MEP) and

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mevalonate (MVA) pathway, respectively.11 Some of them are further metabolized to various

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oxidized or cyclised derivatives by cytochrome P450 (CYP450) enzymes.12 For example,

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CYP71B31 functions in the production of various oxygenated linalool derivatives; CYP76C3

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metabolizes linalool into 8-hydroxylinalool and an unknown linalool derivative in Arabidopsis13.

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CYP76C1 is a multifunctional enzyme and catalyzes a cascade of oxidation reactions to produce

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8-hydroxy, 8-oxo, and 8-COOH-linalool in Arabidopsis.14 Lots of volatile compounds, such as

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d-limonene, nerol, geraniol, germacrene A and valencene, can be partially metabolized to yield

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corresponding derivatives by CYP450 enzymes.12,15

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Citrus volatile compounds are mainly accumulated in the oil sacs of the outer peel layer of

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citrus fruit.4,5,16 Citrus juice sacs are the most important tissues for fresh fruit consumption or

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canned products, but they contain only a small amount volatile compounds.4 Thus, the increases in

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the contents or changes in the profile of volatiles in the juice sacs may greatly improve citrus fruit

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quality.

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The term xenia was coined by Wilhelm Focke in 188117 and refers to the effect of pollen on

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maternal tissues, including the seed coat and pericarp. This effect is separate from the genetic

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contribution of the pollen towards the next generation. Xenia are shown to not only affect fruit

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size, color and maturation date,18 but also to influence the metabolites related to fruit qualities,

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such as soluble sugars, amino acids, proteins, and tannins in pear, plum, blueberry and

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kiwifruit.19-23 In citrus, xenia effects change the number and weight of seeds, size of fruit and

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fruiting rate.24,25 To date, many reports have descripted different xenia phenomenon, but no

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reports describe any xenia effect on the volatile compounds in fruit. Some studies have indicated

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that pollination of a certain apple species with pollen from different species could result in

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different fruit shape indexes, fruit mass, vitamin C and anthocyanin mass fraction.26,27 Most of

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pummelo germplasms are self-incompatible, and thus need pollination from other sources.28

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Hence, the pollen may affect the internal quality of pummelo fruit.

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MS is a wild citrus species native to China and produces inedible fruit containing large

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amounts ofvolatiles.5 The characteristic volatile compounds in MS are cis- and trans-linalool

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oxides and β-myrcene, conferring a special balsamic and floral aroma.5 Interestingly, the

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characteristic aroma of MS has been identified in fruit of ‘Citrange’ (Poncirus trifoliata × C.

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sinensis) plants that are growing near MS in our experimental field. Hence, we speculate that MS

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pollen possibly has a xenia effect on the ‘Citrange’ fruit aroma.

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To test the above speculation in this study, flowers of nine citrus cultivars were artificially

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pollinated with MS pollen. Xenia effect was found on the fruit of three pummelo cultivars,

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showing increased levels of cis- and trans-linalool oxides in fruit juice sacs, changed aroma and

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up-regulated expression level of a cytochrome P450 78A7 gene CitLO1 (cs3g22160). CitLO1 was

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demonstrated to be functional in the production of cis- and trans-linalool oxides in transgenic

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tobacco Bright-Yellow2 (BY2) cells.

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MATERIALS AND METHODS

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Materials

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Fruit on ‘Citrange’ plants grown near MS plants (CM) were collected in 2010 from the

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National Citrus Breeding Center (NCBC) in Huazhong Agricultural University (Wuhan, Hubei)

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for Gas Chromatography-Mass Spectrometry-Olfactometry (GC-MS-O) analysis.

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Flowers of ‘Citrange’, four orange (C. sinensis) cultivars, ‘Early-gold’, ‘Newhall’, ‘Jincheng’,

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‘Lane late’, three pummelo (C.grandis) cultivars, ‘Huanong Red’, ‘Hirado Buntan’ (HB), ‘Feicui’,

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and ‘Clementine’ mandarin (C. clementina) were pollinated with MS pollen separately, in five

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years 2011−2015 (Table 1). Mature fruit resulted from these pollinations were collected and

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washed with tap water. The whole fruit of ‘Huanong Red’ pummelo was used for sensory

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evaluation. The flavedo, albedo, segment membrane and juice sacs of all nine citrus cultivars were

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separated with a scalpel, immediately placed in liquid nitrogen, and stored in ultra-low

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temperature freezers (−80°C) for further analyses.

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Artificial Pollination

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Pollen collection and artificial pollination were conducted as previously described.29 Flowers

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of MS were collected before flower opening. The pollens were collected from dry and open

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anthers under a dim light environment, and then placed in a 28°C oven for drying in dark

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environment. Then, the dry pollens were placed in a centrifuge tube wrapped with foil and stored

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in the desiccator with silica gel as desiccant. Healthy balloon stage flowers of the nine cultivars

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were selected and emasculated, pollinated with MS pollen separately, and subsequently bagged.

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After two days, the bag was removed. The fruit were collected at mature stage for Gas

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Chromatography-Mass Spectrometry (GC-MS) analysis. The numbers of pollinated flowers and

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harvested fruit were shown in Table 1.

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GC-MS-O Analysis

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The GC-MS-O analysis was carried out with an Agilent 6890 GC coupled with an Agilent

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5973 Network mass spectrometer (Agilent Technologies, Palo Alto, CA, USA) equipped with an

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olfactory detected port Gerstel ODP-2 (Gerstel AG Enterprise, Mülheim an der Ruhr, Germany).

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The GC was fitted with an HP-Innowax column (60m × 0.25mm × 0.25μm, Agilent, Palo Alto,

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CA,USA). Other parameters used were the same as described by Liu et al.5

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Extraction and Analysis of Volatiles, Soluble Sugars, Organic Acids and Carotenoids

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Volatiles were extracted as described by Liu et al.5 and quantified using a TRACE GC Ultra

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GC coupled with a DSQ II mass spectrometer (Thermo Fisher Scientific, Waltham, MA) with a

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TRACE TR-5 MS column (30 m × 0.25 mm × 0.25 μm; Thermo Scientific, Bellefonte, PA)

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with a split ratio of 50:1 for the flavedo and a splitless mode for the albedo, segment membrane

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and juice sacs. For identification of volatile compounds, 22 authentic standards were used

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(Supplementary Table 1), and the rest volatile compounds were identified using Xcalibur software

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based on NIST, EPA/NIH Mass Spectral Library (NIST 2008) and the Wiley Registry of Mass

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Spectral Data (8th ed.). The concentrations of volatile compounds were quantified based on the

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contents of internal standard (Methyl nonoate, Sigma, St. Louis, Mo, USA).

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The soluble sugars and organic acids were determined according to Liu et al.30 using a GC

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(Agilent 7890A, Agilent Technologies, Santa Clara, CA,USA) coupled with a HP-5 capillary

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column. Standards of three soluble sugars and three organic acids were used for the qualitative

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analysis, and β-D-phenyl glucopyranoside was used as an internal standard for quantitative

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analysis. All of these authentic standards were purchased from Sigma-Aldrich (St. Louis, Missouri,

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United States). The carotenoids in different citrus tissues were measured by high-performance

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liquid chromatography (HPLC). The method for extraction and parameters for analysis were

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according to Liu et al.30 The standards of violaxanthin, phytoene, α-carotene and lutein were

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purchased from CartoNature (Lupsingen, Switzerland), and β-carotene and lycopene were

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purchased from Sigma-Aldrich.

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Sensory Evaluation of ‘Huanong Red’ Pummelo Fruit

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The whole fruit of ‘Huanong Red’ pummelo resulted from pollination with MS pollen (HM)

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and open pollination (HW) was evaluated by 11 sensory evaluators. A triangle sensory evaluation

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method was adopted to distinguish HM from HW. Four groups of fruit, each including two HM

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and one HW fruit or two HW and one HM fruit, were presented to the sensory evaluators who

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were asked to identify the one fruit showing a different smell from other two fruit. The results

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were analyzed using the one-way analysis of variance (ANOVA).

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RNA-Sequencing and Analysis

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Total RNA was extracted using method as described by Liu et al.31 from HM and HW fruit

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collected in 2012 and 2013. For each sample, mRNA was purified from 2 μg total RNA by

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oligo-dT beads, used to construct RNA-Seq libraries with TruSeq® RNA Sample Prep Kit v2

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(Illumina, SanDiego, CA,USA). The quality of the libraries was checked using a Qubit 3.0

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fluorometer and Quant-iT™ PicoGreen® dsDNA Assay Kit (Invitrogen). The libraries were

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sequenced on the Illumina HiSeq 2000 platform in a paired-end mode.

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The raw RNA-Seq data were cleaned by removing adaptor sequences and low-quality reads

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using Cutadapt v1.18 and Trimmomatic-0.36 software respectively.32,33 The clean data were

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mapped to the reference sweet orange genome assembly (http://citrus.hzau.edu.cn/orange/

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index.php) using the TopHat program.34 Based on the mapping results, transcript abundance for

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each gene was estimated using HTSeq,35 and differentially expressed genes were identified using

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edgeR package.36 Gene annotation was performed using PlabiPD (Mercator sequence annotation,

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http://www.plabipd.de/portal/web/guest/mercator-sequence-annotation). The raw data were upload

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to NCBI SRA database (BioProject ID: PRJNA549576). The Pearson correlation coefficients

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between biological replicateswere calculated by R package‘‘corrplot’’.37 The heatmap was

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constructed using TBtools.38

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Quantitative Reverse Transcription Polymerase Chain Reaction (qRT-PCR)

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The total RNA extracted from the HW and HM fruit was used for single-strand cDNA

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synthesizing using the RevertAid First Strand cDNA Synthesis Kit (K1621, Thermo Scientific).

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The cDNA was used as template in PCR together with gene-specific primers (Supplementary

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Table 2) designed using Primer Express 3.0 (Applied Biosystems, Foster City, CA). The PCR was

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performed using the ABI 7900 Fast Real Time System (PE, Applied Biosystems, Foster City, CA,

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USA). Actin gene was as an internal control to normalize expression between different samples.

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The Actin primers and data analysis protocol were the same as described by to Liu et al.39

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Gene Isolation and Sequence Analysis

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The CDS ofCitLO1genewas amplified from the cDNA of HM fruit using a pair of primers

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(F:ATGGGTCGAATCCCCATCCCCGG, R: CCGGGGATGGGGATTCGACCCAT) and the

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Phanta® Max Super-Fidelity DNA Polymerase (P505, Vazyme, Nanjing, China), then cloned into

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a pTOPO-Blunt vector (CV1702, Aidlab, Co., Beijing, China). The protein sequences for 14

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CYP450and five putative citrus CYP450 genes identified in this study were download from NCBI

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database and sweet orange reference genome respectively. Those sequences were used to construct

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a phylogenetic tree by MEGA7 with the neighbor-joining method based on ClustalW analysis.40

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The alignment of 11 CYP78A7 and CitLO1 protein sequences was conducted using the GeneDoc

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software version 2.7.

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Expression of CitLO1 in Tobacco BY2 Cells

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The CitLO1 CDS was transferred into pDONR201 vector by the Gateway BP reaction to

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produce an entry clone. The CitLO1 CDS was further transferred from the entry clone into the

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binary vector PH7WG2D by Gateway LR reaction to form a translational fusion with green

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fluorescent protein (GFP) reporter gene under the control of CaMV-35S promoter.41 Then the

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destination vector was electroporated into Agrobacterium tumefaciens (GV3101). A single

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positive GV3101 colony containing the CitLO1 CDS was used for inoculation in 50 mL liquid LB

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medium and the liquid culture was grown at 28°C until its absorbance reached 0.6–0.8 at 600 nm.

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The GV3101 cultures were used to transform tobacco BY2 cells according to a previously

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reported

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stereomicroscope with the GFP filter of a 488-nm excitation and confirmed by PCR using CitLO1

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gene specific primers.

method.42

Transgenic

BY2

calli

were

identified

using

an

epifluorescence

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Fresh BY2 cultures (2 g each) of wild-type (WT) and transgenic (BY2-CitLO1) cells were

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grown on agar medium for 7 d. Then, 1 g fresh cells were cultured in 20 ml liquid medium for

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another 4 d, followed by the addition of 50 μM (–)-linalool (95.0%, CAS126-91-0, Aldrich,

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Spain)as the substrate. At 48 h after substrate addition, the cells were collected by centrifugation

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and extracted for volatiles that were analyzed by GC-MS. Linalool oxides in the volatile mixture

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were quantified using three biological replicates and the standard curves of pure cis- and

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trans-linalool oxides according to Liu et al,5 The profiles of cis- and trans-linalool oxides shared a

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common specific ion (m/z=59). The volatiles of BY2-CitLO1 cells were analyzed using the total

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ion current (TIC) and selective ion monitoring (SIM) (m/z=59) mode. The equations of standard

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curves obtained from the TIC mode (Table 1) based on 4–6 concentrations were used for

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quantifying the contents of cis- and trans-linalool oxides.

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Data Analysis

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The contents of volatiles, soluble sugars, organic acids and carotenoids were quantified based

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on the contents of internal standards. In ‘Huanong Red’ pummelo fruit, the contents of each

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compound in HM fruit were set as 1 for normalization. SAS software (SAS Institute Inc., Cary,

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NC, USA) was used for analysis of variance with ANOVA (P< 0.05).

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RESULTS

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Identification of Characteristic Aroma of C.mangshanensis in ‘Citrange’ Fruit

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C.mangshanensis (MS) has a special aroma contributed by some aromatic volatiles that are

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not normally found in other citrus species5. Interestingly, our preliminary experiments identified

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these especial aromatic compounds in the fruit of ‘Citrange’ plants that were grown near MS

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(termed as CM fruit). Thirty aromatic compounds were identified in the peel of the CM fruit by

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GC-MS-O analysis (Table 2). Of them, 20 were also identified in the peel of MS fruit (Table 2),

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including the three compounds, β-myrcene, cis- and trans-linalool oxides, contributing to MS

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special aroma. The β-myrcene content in the CM fruit (520.83 ± 58.84 ng/g) was significantly

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higher than that in normal ‘Citrange’ fruit (283.02 ± 102.92 ng/g) that was not near MS plants.

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The contents for cis- and trans-linalool oxides were too low in both types of fruits to show any

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significant difference between them. Nevertheless, this result indicated a possible xenia effect of

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MS pollen on ‘Citrange’ fruit chemical composition.

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Effect of C.mangshanensis Pollen on Fruit Volatile Profiles

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To confirm the above xenia effect, we compared two groups of ‘Huanong Red’ pummelo

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fruit, obtained from pollination with MS pollen (HM) or obtained from open pollination (HW). A

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sensory evaluation result showed that the aroma was significantly different between HM and HW

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fruit (P=0.0007) (Table 3), indicating that the xenia effect of MS pollen changed the olfactory

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quality of ‘Huanong Red’ pummelo fruit.

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The above fruit were further shown to contain at least 16 volatile compounds in their juice

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sacs, including four monoterpenes, two monoterpene oxides, one monoterpene aldehyde, five

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sesquiterpenes, one sesquiterpene alcohol, one sesquiterpene ketone and two aldehydes. The

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contents of the two monoterpene oxides (cis- and trans-linalool oxides) in HM were significantly

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higher than those in HW in two harvest seasons (Supplementary Table 3).

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In the flavedo of HM and HW fruit, 50 volatile compounds were detected in two harvest

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seasons, including 29 monoterpenes and their derivatives, 16 sesquiterpenes and their derivatives,

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four aldehydes and one ester (Supplementary Table 4). Five volatile compounds (sabinene hydrate,

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citronellal, (E,E)-α-farnesene, methyl palmitate and octanal) were detected only in 2012. The

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concentrations of thirteen monoterpene compounds (α-thujene, α-pinene, camphene, sabinene,

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β-pinene,

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trans-β-ocimene, γ-terpinene and terpinolene) were significantly higher in HW than in HM in

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2012; however, only one monoterpene (α-thujene) was significantly different between HM and

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HW in 2013. The total content of monoterpenes in HW was significantly higher than that in HM,

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especially in 2012. Four monoterpene oxides were detected, and cis- and trans-linalool oxides

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were significantly lower in HM than in HW in two seasons. Twelve and thirteen sesquiterpenes

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were detected in 2012 and 2013, respectively. The concentrations of eight (2012) and five (2013)

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sesquiterpenes were significantly higher in HW than in HM (Supplementary Table 4).

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β-myrcene,

pseudolimonene,

α-phellandrene,

d-limonene,

cis-β-ocimene,

In the albedo, 24 volatile compounds were detected, with 15 and 18 compounds being found

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in 2012 and 2013, respectively. Among the six monoterpenes, two monoterpenes showed

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significantly lower concentrations in HM than in HW in 2012, but no difference was observed for

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all the monoterpenes in 2013. As for monoterpene oxides, the concentrations of cis- and

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trans-linalool oxides in HM were significantly higher than those in HW in 2013, but no difference

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was observed in 2012. Only one monoterpene alcohol (cis-carveol) was significantly higher in

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HM than in HW based on concentration. For sesquiterpenes, only one showed significant

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differences between HW and HM (Supplementary Table 5).

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In the fruit segment membrane, 18 volatile compounds were detected, with 10 and 14

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compounds being detected in 2012 and 2013, respectively. Among the 18 compounds, four

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monoterpenes (α-pinene, β-pinene, β-myrcene and d-limonene) were detected, but they showed no

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significant differences between HM and HW. There were three monoterpene oxides, and cis- and

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trans-linalool oxides were significantly higher in HM than in HW. A total of four monoterpene

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alcohols and three sesquiterpenes were found, but only limonene-diol was significantly higher in

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HM than in HW (Supplementary Table 6).

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The above data obtained with ‘Huanong Red’ pummelo clearly showed a xenia effect. To

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further test whether the xenia effect work in different pummelo cultivars, two other pummelo

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cultivars, ‘HB’and ‘Feicui’, were pollinated with MS pollen in Yichang (Hubei province) and

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Lishui (Zhejiang province) in 2015 (Table 1). Fourteen ‘HB’ fruit (HBM) and three ‘Feicui’ fruit

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(FM) obtained with MS pollen were collected at maturity stage, and six ‘HB’ fruit (HB) and four

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‘Feicui’ (FC) fruit obtained with open pollination were collected at maturity stage. Analysis of

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volatiles showed that the contents of cis- and trans-linalool oxides in the juice sacs of pummelo

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fruit were significantly increased by the pollination with MS pollen (Fig.1), conforming that the

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xenia effect worked in different pummelo cultivars.

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We further tested if the xenia effect could be present on non-pummelo cultivars. Fruit of one

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‘Citrange’, four orange (‘Early-gold’, ‘Newhall’, ‘Jincheng’, ‘Lane late’) and one ‘Clementine’

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mandarin were produced by pollination with the MS pollen. The volatile profiles in juice sacs of

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the fruit were analyzed. The result showed a low level of total volatile contents, non-detectable

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amount of cis- and trans-linalool oxides and no significantly difference to fruit obtained from

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open pollination

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detected in these three types of non-pummelo citrus cultivars.

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Content Changes of Other Metabolites in HM and HW Fruit

(Supplementary Table 7). This result indicated that the xenia effect could not be

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Totally, three main organic acids and three main soluble sugars were analyzed in different

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tissues of ‘Huanong Red’ pummelo (Supplementary Table 8). In 2013, the total content of organic

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acids in flavedo was lower than that in 2012, while that of soluble sugars was higher. The content

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of malic acid was significantly higher in HM than in HW, and it was the opposite case for fructose

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and glucose in 2012. However, there were no significant differences between HM and HW in

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2013, due to the large differences in biological replicates (Supplementary Table 8). The content of

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citric acid in albedo in HM was significantly higher than that in HW in 2013, but not detected in

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neither HW nor HM in 2012. The content of quinic acid in the segment membranes was

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significantly higher in HM than that in HW in 2013, but was not significantly different between

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the two types of fruits in 2012. In juice sacs, the contents of the six compounds were not

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significantly different between HM and HW in 2012, even three soluble sugars in HM were

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significantly lower compared with those in HW in 2013 (Supplementary Table 8). Compared with

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HW fruit, HM fruit appeared to show an increased level of organic acids but a decreased level of

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Journal of Agricultural and Food Chemistry

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soluble sugars.

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Among the 14 carotenoids detected in the flavedo, phytoene was the most abundant

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compound and did not show significant differences between HM and HW in two seasons. Seven

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compounds (violaxanthin, luteoxanthin, 9-cis-violaxanthin, lutein, zeaxanthin, β-crytoxanthin and

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β-carotene) were significantly lower in HM than in HW in 2012, but only two compounds

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(α-carotene and cis-β-carotene) were significantly lower in HM than in HW in 2013. Three

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(β-carotene, γ-carotene and lycopene) and five compounds (phytofluene a, phytofluene b,

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β-carotene, γ-carotene and lycopene) were detected in the albedo and juice sacs respectively in

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two seasons, but they showed no significant differences between HW and HM. Three compounds

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(β-carotene, γ-carotene and lycopene) were detected in the segment membrane, among which

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β-carotene and γ-carotene were significantly higher in HM than in HW. Therefore, MS xenia

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mainly affects the carotenoids in flavedo and segment membrane, but has no significant effect on

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thecarotenoids in other fruit tissues (Supplementary Table 9).

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Candidate Genes for Production of Cis- and Trans-linalool Oxides

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To identify the genes contributing to the increased biosynthesis of cis- and trans-linalool

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oxides in ‘Huanong Red’ pummelo pollinated with MS, the juice sacs of HW and HM collected in

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2012 (HW-1 and HM-1) and in 2013 (HW-2 and HM-2) were used for RNA-Seq analyses.

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Pearson correlation coefficient was 0.92 between HW-1 and HW-2, while was 0.94 between

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HM-1 and HM-2 (Supplementary Fig.1), which indicated a good repeatability between biological

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replicates. A total of 375 differentially expressed genes (|log2FC| > 2, P