Comparative Shotgun Proteomics Using Spectral Count Data and

Comparative Shotgun Proteomics Using Spectral Count Data and

Jun 29, 2010 - Jim Ayers Institute for Precancer Detection and Diagnosis, Departments of Biostatistics, Biochemistry, Cancer Biology, Medicine, and Otolaryngology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, and Department o

Comparative Shotgun Proteomics Using Spectral Count Data and

Comparative Shotgun Proteomics Using Spectral Count Data and Quasi-Likelihood Modeling. Ming Li, William Gray, Haixia Zhang, Christine H. Chung, Dean ...

Comparative Shotgun Proteomics Using Spectral ... - ACS Publications

Jun 29, 2010 - (9, 10) An extension of this approach led to the identification of gene expression ... (17, 18) We therefore developed a quasi-likelihood model, that allows over- ...... Beissbarth , T.; Hyde , L.; Smyth , G. K.; Job , C.; Boon , W. M.

A Shotgun Proteomics Data Analysis Pipeline Using Cloud and High

Oct 22, 2012 - Facilities Pipeline (CPFP) to allow use of remote cloud and high performance computing (HPC) resources for shotgun proteomics data processing. CPFP has been modified to include modular local and remote scheduling for data processing jo

Cloud CPFP: A Shotgun Proteomics Data Analysis Pipeline Using

Oct 22, 2012 - We have extended the functionality of the Central Proteomics Facilities Pipeline (CPFP) to allow use of remote cloud and high performance computing (HPC) resources for shotgun proteomics data processing. CPFP has ... Citation data is m

Cloud CPFP: A Shotgun Proteomics Data Analysis Pipeline Using

Oct 22, 2012 - We have extended the functionality of the Central Proteomics Facilities Pipeline (CPFP) to allow use of remote cloud and high performance computing (HPC) resources for shotgun proteomics data processing. CPFP has been modified to inclu

Analysis of Shotgun Proteomics and RNA Profiling Data from

We analyzed results from MS/MS shotgun detection of 426 Arabidopsis chloroplast proteins and genome-wide RNA profiling to identify correlations between ...

Analysis of Shotgun Proteomics and RNA Profiling Data from

Mar 16, 2005 - To approach a full understanding of system functions, it is necessary to understand the relationship between transcript and protein levels as well as how ... MS/MS data interpretation was based on the SEQUEST software (Thermo Finnigan,

Cloud CPFP: A Shotgun Proteomics Data Analysis ... - ACS Publications

Oct 22, 2012 - framework and can scale to support a large number of users. The database ... of bioinformatics computing projects.5â7. Within AWS users may ...

Targeted Feature Detection for Data-Dependent Shotgun Proteomics

Jul 4, 2017 - Label-free quantification of shotgun LCâMS/MS data is the prevailing approach in quantitative proteomics but remains computationally nontrivial. The central data analysis step is the detection of peptide-specific signal patterns, call

Comparative Shotgun Proteomics Using Spectral Count Data and

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