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Bioactive Constituents, Metabolites, and Functions
Cytochalasins and an Abietane-Type Diterpenoid with Allelopathic Activities from the Endophytic Fungus Xylaria sp. Wen-Bo Han, Yi-Jie Zhai, Hui-Yi Zhou, Jian Xiao, Jin-Ming Gao, Yuqi Gao, and Gennaro Pescitelli J. Agric. Food Chem., Just Accepted Manuscript • DOI: 10.1021/acs.jafc.9b00273 • Publication Date (Web): 15 Mar 2019 Downloaded from http://pubs.acs.org on March 17, 2019
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Journal of Agricultural and Food Chemistry
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Cytochalasins and an Abietane-Type Diterpenoid with Allelopathic
2
Activities from the Endophytic Fungus Xylaria sp.
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Wen-Bo Han,†,# Yi-Jie Zhai,†,# Yuqi Gao,† Hui-Yi Zhou,† Jian Xiao,‡ Gennaro
4
Pescitelli,§
5
†Shaanxi
6
Chemistry and Pharmacy, Northwest A&F University, Yangling 712100, P. R. China
7
‡
8
Engineering, Baoji University of Arts and Sciences, Baoji 721013, P. R. China
9
§ Dipartimento
10
and Jin-Ming Gao*†
Key Laboratory of Natural Products & Chemical Biology, College of
Shaanxi Key Laboratory of Phytochemistry, College of Chemistry and Chemical
di Chimica e Chimica Industriale, Università di Pisa, via Risorgimento
35, I-56126 Pisa, Italy
11
12
Corresponding author:
13
Prof. Dr. Jin-Ming Gao. Tel.: +86-29-87092335
14
E-mail:
[email protected] 15 16 17
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ABSTRACT: Bioactivity-guided isolation of the cultures of the endophytic fugus
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Xylaria sp. XC-16 residing in a deciduous tree Toona sinensis led to the discovery of
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four new allelochemicals (1–4) including three cytochalasins, epoxycytochalasin Z17
22
(1), epoxycytochalasin Z8 (2), epoxyrosellichalasin (3), and an abietane-type
23
diterpenoid, hydroxyldecandrin G (4), along with four known analogues,
24
10-phenyl-[12]-cytochalasins Z16 (5) and Z17 (6), cytochalasin K (7), and cytochalasin
25
E (8). The structures of these compounds were elucidated by comprehensive
26
spectroscopic methods, and their absolute configurations were determined by
27
electronic circular dichroism (CD) and X-ray diffraction. All the chemicals were
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tested for their allelopathic effects on the turnip (Raphanus sativus) and wheat
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(Triticum aestivum). Notably, compounds 3, 4 and 7 strongly inhibited wheat shoot
30
elongation, and compounds 5, 7 and 8 inhibited wheat root elongation, showing
31
comparable IC50 values to the positive control glyphosate. Meanwhile, compound 8
32
was a potential inhibitor on turnip root elongation with the IC50 value of 1.57 ± 0.21
33
μM, which was 50-fold more potent than glyphosate. Nevertheless, compounds 5 and
34
7 stimulated the turnip shoot elongation at lower concentrations.
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KEYWORDS: Xylaria sp.; cytochalasins; diterpenoid; allelopathic activities;
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herbicides; phytotoxicity; endophyte
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INTRODUCTION
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Endophytes are defined as endosymbiotic microorganisms that inhabit in the tissue of
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plant without causing any damage to their hosts. They are widely distributed
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mutualists that protect the host plants from pathogenic microbial attack or other
45
hostile environments by producing a great diversity of secondary metabolites or
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hydrolytic enzymes, which play an important role in agrochemical and
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pharmaceutical industries.1−3 The genus Xylaria comprises several hundreds of
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species and most of them are known from collections of stromata on dead wood.4,5
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Fungi of this genus are widespread in vascular/nonvascular plants in their asexual
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stage (known as fungal endophytes), which synthesizes various bioactive secondary
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metabolites viz. terpenoids, cytochalasins, alkaloids, polyketides, volatile organic
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compounds and many more.5 These metabolites have exhibited a wide spectrum of
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potential activities such as cytotoxic, antibacterial, antimalarial and α-glucosidase
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inhibitory activity.5
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The
cytochalasins
represent
a
diverse
group
of
fungal
polyketide
56
synthase-nonribosomal peptide synthetase (PKS-NRPS) hybrid metabolites with
57
multiple biological functions that have been isolated from various fungi including
58
Aspergillus, Phomopsis, Chaetomium, Xylaria, Rosellinia, Zygosporium.2,6 Many
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cytochalasins, such as cytochalasin A and B, the first characterized compounds, were
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reported to inhibit the polymerization of actin, cytochalasin H was shown to regulate
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plant growth, cytochalasin D was demonstrated to inhibit protein synthesis and 3
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cytochalasin E was shown to prevent angiogenesis.7 Recently, some cytochalasins
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have been shown to inhibit the biofilm formation of Staphylococcus aureus,8 and to
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disrupt the actin cytoskeleton of eukaryotic cells.9 During our research on the
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endophytic fungi for new agrochemicals,10−15 an extract derived from the endophytic
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fungus Xylaria sp. XC-16, isolated from a deciduous tree Toona sinensis (family
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Meliaceae),16 based on the OSMAC (one strain–many compounds) strategy,17 was
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found to be allelopathic towards two herbaceous plants turnip (Raphanus sativus) and
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wheat (Triticum aestivum) used for allelochemical assays.17,18 To identify more potent
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allelochemicals with unforeseeable frameworks, a repetitive chromatographic
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fractionation of the extract from the title fungus gave three new cytochalasin
72
derivatives (1−3) and a new abietane-type diterpenoid (4), along with four known
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cytochalasins (5−8) (Figure 1). Herein, we present the isolation, the structure
74
determination and the allelopathic activities of these compounds.
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MATERIALS AND METHODS
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General Experimental Procedures
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Optical rotations were recorded on an Autopol III automatic polarimeter (Rudolph
78
Research Analytical, NJ, USA). UV measurements were obtained using a UV−vis
79
Evolution 300 spectrometer. (Thermo Fisher Scientific Inc., MA, USA). IR spectra
80
were measured on a Bruker Tensor 27 spectrophotometer (Bruker Optics,
81
Rheinstetten, Germany) with KBr pellets. ECD spectra were performed on a
82
Chirascan spectrometer (Applied Photophysics Ltd., Leatherhead, Surrey, U.K.).
83
NMR spectra were obtained on a Bruker Avance III 500 Spectrometers (Bruker 4
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BioSpin, Rheinstetten, Germany) with tetramethylsilane (TMS) as an internal
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standard at room temperature. High-resolution (HR) ESI-MS spectra were recorded
86
on an Agilent 6520 Accurate-Mass Q-TOF LC/MS spectrometer. Silica gel (200−300
87
or 300–400 mesh, Qingdao Marine Chemical Ltd., China), RP-18 gel (20–45 μm, Fuji
88
Silysia Chemical Ltd., Japan) and Sephadex LH-20 (Amersham Biosciences Inc.,
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Shanghai, China) were used for column chromatography (CC). Fractions were
90
monitored by TLC, and compounds were visualized by spraying with 10% H2SO4 in
91
ethanol followed by heating. Semi-preparative RP-HPLC was analyzed by a Waters
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1525EF (Waters Corp., MA, USA) liquid chromatography system equipped with a
93
Hypersil BDS C18 column (4.6 mm × 250 mm; 10.0 mm × 250 mm). All other
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chemicals used in this study were of analytical grade.
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Cultivation and Extraction
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The strain Xylaria sp. XC-16 used in this investigation was described earlier.16 The
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producing strain was cultured on a plate of potato dextrose agar (PDA) medium at 28
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± 0.5 °C for 5 days. Then one piece (approximately 5 mm2) of mycelium was
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vaccinated aseptically with 100 mL Erlenmeyer flasks each containing 30 mL of PD
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liquid medium. and the seed liquids were cultivated at 28 °C for 3 days on a shaking
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table at 120 rpm. A suspension (200 μL) of the seed liquid was inoculated cultivated
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to a KM solid medium (corn pieces 32.9%, rice hull 49.3%, wheat bran 16.7%,
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MgSO4 0.6%, KH2PO4 0.6%, with 30 mL of distilled water) in 300 Erlenmeyer flasks
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(500 mL each). After a subsequent fermentation at 28 °C for 28 days, cultures were
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ultrasonically extracted four times with methanol and acetone. The solvent was 5
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removed and dried under reduced pressure to yield a crude extract. The extract was
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dissolved in 90% MeOH-H2O (3 L) and further treated three times with petroleum
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ether, and the remaining layer was extracted by EtOAc and concentrated under
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vacuum to give a crude extract (58.2 g).
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Isolation of metabolites 1−8
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The crude extract was subjected to chromatography over a silica gel column
112
followed by a stepwise gradient elution with CHCl3-MeOH (v/v, 100:0 → 0:100) to
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provide four fractions A~E. Fraction B was further purified by a RP-18 column eluted
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with a gradient of MeOH-H2O (v/v, 30% → 100%) to obtain four fractions (B-1~B-4).
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Fraction B-3 was subjected to silica gel CC eluting with a gradient of CHCl3-MeOH
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(70:1 →10:1) and Sephadex LH-20 (MeOH), and further purified by RP-HPLC with
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MeOH-H2O (42:58) to yield compound 4 (tR = 21.0 min, 11.0 mg). Fraction C was
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further chromatographed on Sephadex LH-20 eluted with MeOH to obtain seven
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fractions (C-1~C-7). Fraction C-4 was separated by a RP-18 column eluted with a
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gradient of MeOH-H2O (v/v, 20% → 100%), and further purified by RP-HPLC with
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MeCN-H2O (65:35) to yield compounds 2 (tR = 19.0 min, 3.4 mg) and 7 (tR = 21.5
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min, 3.8 mg). Fraction C-5 was subjected to a RP-18 column eluted with a gradient of
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MeOH-H2O (v/v, 20% →100%) and next purified by RP-HPLC with MeCN-H2O
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(70:30) to afford compounds 1 (tR = 15 min, 4.2 mg) and 5 (tR = 16.5 min, 4.4 mg).
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Fraction C-6 was isolated on the Sephadex LH-20 and then applied to RP-HPLC with
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MeCN-H2O (65:35) to give 8 (tR = 19 min, 4.5 mg), 6 (tR = 22.5 min, 3.9 mg) and 3
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(tR = 24 min, 3.1 mg). 6
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Epoxycytochalasin Z17 (1): colorless prisms; [α]D20 +48 (c 0.013, CH3OH); UV
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(MeOH) λmax (log ε) 206 (3.65), 243 (3.10); IR (KBr) νmax 3425, 2921, 2349, 1713,
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1660, 1448, 1317, 1222, 1027, 981 cm−1; HR-ESI-MS: m/z: 502.2206 [M + Na]+
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(calcd. for C28H33NO6Na, 502.2200); 1 H and
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Table 1.
13
C NMR data assigned and listed in
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Epoxycytochalasin Z8 (2): colorless needles; [α]D20 +4.4 (c 0.050, CH3OH); UV
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(MeOH) λmax (log ε) 208 (2.91); IR (KBr) νmax 3437, 2939, 2351, 2246, 1707, 1454,
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1234, 1112, 1022 cm−1; HR-ESI-MS: m/z: 504.2353 [M + Na]+ (calcd. for
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C28H35NO6Na, 504.2357); 1 H and 13 C NMR data assigned and listed in Table 1.
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Epoxyrosellichalasin (3): white solid powder; [α]D20 +4.0 (c 0.025, CH3OH); UV
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(MeOH) λmax (log ε) 205 (3.57), 228 (3.13); IR (KBr) νmax 3420, 2923, 2854, 2350,
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1712, 1665, 1451, 1380, 1232, 1032 cm−1; HR-ESI-MS: m/z: 502.2201 [M + Na]+
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(calcd. for C28H33NO6Na, 502.2200); 1 H and
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Table 1.
13
C NMR data assigned and listed in
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Hydroxyldecandrin G (4): light-yellow solid; [α]D20 +16.7 (c 0.030, CH3OH); UV
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(MeOH) λmax (log ε) 209 (3.63), 249 (3.19), 293 (2.44); IR (KBr) νmax 3428, 2965,
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2349, 2247, 1666, 1558, 1211, 1105, 1024, 651 cm−1; HR-ESI-MS: m/z: 355.1885 [M
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+ Na]+ (calcd. for C20H28O4Na, 355.1880); 1 H and 13 C NMR data assigned and listed
146
in Table 1.
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Crystal data of epoxycytochalasin Z17 (1): C28H33NO6, Mr =479.55 prism from
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MeOH, space group I 1 2 1, a = 26.2205(6) Å, b = 7.5143(1) Å, c = 27.6723(5) Å, V =
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5045.40 (17) Å3, Z = 8, μ = 0.719 mm-1 and F(000) = 2048.0; T = 172.99(10); crystal 7
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dimensions: 0.10 × 0.08 × 0.05 mm3; R = 0.037, wR = 0.102, S = 1.022; Flack
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parameter = 0.23(7); Crystallographic
152
the
data
for
1
has
been
deposited
at
Cambridge Crystallographic Data Center with the number CCDC-1886353.
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Crystal data of epoxycytochalasin Z8 (2): C28H35NO6, Mr =481.57 needle from
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MeOH, space group P 1 21 1, a = 7.2257(2) Å, b = 14.0039(4) Å, c = 13.4952(3) Å, V
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= 1324.42(6) Å3, Z = 2, μ = 0.685 mm-1 and F(000) = 516.0; T = 173(2); crystal
156
dimensions: 0.13 × 0.05 × 0.04 mm3; R = 0.041, wR = 0.107, S = 1.107; Flack
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parameter = 0.01(15); CCDC-1886352.
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Determination of the Absolute Configuration of the 2, 3-Diol Units in Compound
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4 by Snatzke’s and Frelek’s Method.
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According to the published procedure,19,20 a 1:1.2 mixture of diol/Mo2(OAc)4 was
161
subjected to ECD measurements at a concentration of 0.5 mg/mL for compound 4.
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The first ECD spectrum was recorded immediately after mixing, and its evolution was
163
monitored over time until the signal was stationary (approximately 2 h after mixing).
164
The inherent ECD was subtracted. The observed sign of the diagnostic band at 310 −
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340 nm in the induced ECD spectrum was correlated to the absolute configuration of
166
the 2, 3-diol unit.
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Allelopathic Activity Bioassay.
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The seeds of two herbaceous plants, turnip (Raphanus sativus) and wheat (Triticum
169
aestivum) were used for the bioassay according to the previously reported
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procedure.11,17 The plant seeds were washed by running water for 2 h, dipped in 0.5%
171
KMnO4 for 20 min, and washed until they were colorless. Glyphosate was selected as 8
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the positive control, the compounds and blank solvent MeOH were added to 12-well
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plates to make the final concentrations of 100 and 6.25 μM. After the evaporation of
174
MeOH, the plant seeds were put into the 12-well plates and irrigated with deionized
175
water. Triplicate experiments were conducted. The plates were then cultivated 48 h
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under 25 °C. The germination rates were calculated according to eq 1, and the
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allelopathic effects [response index (RI)] were calculated according to the equation 2:
178
germination rate (%) = (number of germinated seeds) / (total number of seeds) (1)
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If T > C, then RI = 1 − C/T; if T < C, then RI = T/C – 1
(2)
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where T is the length of the treatment, C is the length of the blank control, and RI is
181
the response index (RI > 0 means stimulation effect, and RI < 0 means inhibition
182
effect). RIs are expressed as averages ± standard deviation (SD) for three replicates.
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The data analysis was performed using SPASS 17.0 software.
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Computational Section.
185
Molecular mechanics and preliminary Density Functional Theory (DFT) calculations
186
were run with Spartan’16 (Wavenfunction, Irvine, CA, USA, 2016) with default
187
parameters, default grids and convergence criteria; DFT and Time-Dependent DFT
188
(TDDFT) calculations were run with Gaussian’16 (Revision A.03; Gaussian Inc.:
189
Wallingford, CT, USA, 2016) with default grids and convergence criteria. The
190
conformational search was run with the Monte Carlo algorithm implemented in
191
Spartan’16 using Merck molecular force field (MMFF). All structures obtained
192
thereof were optimized with DFT at the B97X-D/6-31G(d) level in vacuo, and
193
reoptimized at the B97X-D/6-311+G(d,p) level including the polarizable continuum 9
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model (PCM) for MeOH in its Integral Equation Formalism (IEF) formulation. The
195
above procedure afforded 3 minima for compound 3, the most stable of which had a
196
population of >97%. TDDFT calculations were run with B3LYP and CAM-B3LYP
197
functionals and def2-TZVP basis set, including PCM for MeOH. Average ECD
198
spectra were computed by weighting the ECD spectrum calculated for each conformer
199
with Boltzmann factors at 300K estimated from DFT internal energies. ECD spectra
200
were plotted using the program SpecDis (version 1.71; Berlin: Germany, 2017;
201
http:/specdis-software.jimdo.com). Similarity factors were also estimated with
202
SpecDis.
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RESULTS AND DISCUSSION
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Structure Identification of New Compounds
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Epoxycytochalasin Z17 (1) was obtained as colorless prisms, which was evidenced to
207
have a molecular formula of C28H33NO6 from its Na+-liganded molecular ion at m/z
208
502.2206 (C28H33NO6Na requires 502.2200) in its high-resolution electrospray
209
ionization mass spectrometry (HR-ESI-MS). The 1H and
210
revealed four methyls, three methenes and five methines. The 1H NMR resonance
211
signals at δH 7.35 (t, J = 7.1 Hz), 7.28 (t, J = 7.4 Hz), 7.18 (d, J = 7.1 Hz) disclosed
212
the presence of a monosubstituted benzene moiety in the molecule, which was
213
supported by the chemical shifts at δc 127.3, 129.1 and 129.2 in the
214
spectrum (Table 1). A pair of double bonds were indicated by the 1H NMR signals at
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δH 5.62 (ddd, J =15.1, 11.0, 3.8 Hz), 5.77 (ddd, J = 15.1, 10.4, 1.4 Hz) and 6.40 (t, J = 10
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13C
NMR spectra for 1
13C
NMR
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8.0 Hz) (Table 1). In the 13C NMR spectrum, the signals at δc 168.7, 170.4 and 205.1
217
indicated the presence of three carbonyl groups in 1. The subsequent analysis of its 2D
218
NMR spectra including HSQC, COSY, and HMBC unambiguously pinpointed that 1
219
was a cytochalasin derivative. Comparison of the 1H and
220
those of the known cytochalasin Z17 21 demonstrated that the double bond between C-5
221
and C-6 was epoxidized in 1. This was confirmed by the upfield chemical shifts of
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C-5 and C-6 at δc 62.8 and 64.2 in the
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correlations of CH3-11with C-4, C-5 and C-6, and of CH3-12 with C-6 and C-7 could
224
further witness this change. The relative configuration of 1 was next established by
225
NOESY experiment, coupled with comparison of the coupling constants described for
226
the corresponding centers in cytochalasin Z17.21 Specially, the stereochemistry of
227
5,6-epoxide function as shown in 1 was evidenced by the NOE correlations from
228
CH3-11 to H-3, and from CH3-12 to H-7. The large coupling constant of 10.4 Hz
229
between H-7 and H-8 established the location of H-8 at an axial position. In addition,
230
the NOE correlation from H-4 to H-8 indicated they were cofacial. The structure of 1
231
was confirmed by the single-crystal X-ray analysis (Cu Kα) leading to the
232
determination of its absolute configuration as (+)-(3S,4R,5R,6S,7S,8S,9R,16S)-1
233
(Figure 2).
13C
13C
NMR data of 1 with
NMR spectrum. Moreover, the HMBC
234
Epoxycytochalasin Z8 (2) isolated as colorless needles possessed a molecular
235
formula of C28H35NO6 from its Na+-liganded molecular ion at m/z 504.2353
236
(C28H35NO6Na requires 504.2357) in its high-resolution electrospray ionization mass
237
spectrometry (HR-ESI-MS). In other words, its formula has two more hydrogen 11
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atoms than that of compound 1. The 1H NMR and
239
similar to those of cytochalasin Z8 (Table 1).22 However, the molecular formula of 2
240
allowed one extra O added compared to that of cytochalasin Z8. Specifically, the
241
singlets at δH 1.25 and 1.38 ascribed to CH3-11 and CH3-12 were both upfield
242
compared to those in cytochalasin Z8, which demonstrated that 2 was a 5,6-epoxide
243
cytochalasin Z8 derivative. These afore-mentioned structure elements were
244
subsequently substantiated by the HSQC, NOESY, and HMBC experiments, leading
245
to the unequivocal assignment of all 1H and
246
stereochemistry of 2 was next established by NOESY experiment and coupling
247
constants. A large diaxial coupling constant (10.4 Hz) between H-7 and H-8 indicated
248
an axial configuration for H-7. The NOE correlations from H-7 to CH3-12, from H-4
249
to H-8, and from CH3-11 to H-3 demonstrated that H-4 and H-8 were cofacial, and
250
H-3, H-7, CH3-11 and CH3-12 were on the opposite side of the cyclohexane ring.
251
Additionally, the NOE correlations from CH3-22 to H-17, and from CH3-23 to H-16
252
indicated the same orientation of CH3-22, H-17 and H-18. Thus, the structure of
253
compound 2 was determined as shown, and the absolute configuration of 2 was finally
254
confirmed as (+)-(3S,4R,5R,6S,7S,8S,9R,16S,17R,18S)-2 by single-crystal X-ray
255
diffraction analysis (Cu Kα) (Figure 2).
13C
13C
NMR spectra of 2 were very
NMR signals. The relative
256
Epoxyrosellichalasin (3) obtained as a white powder, exhibited a quasi-molecular
257
ion at m/z 502.2201 ([M+Na]+) in its high-resolution ESI mass spectrum
258
(HR-ESI-MS), demonstrating its molecular formula to be C28H33NO6. The 1H NMR
259
spectrum was very similar to that of rosellichalasin,21 a metabolite produced by the 12
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phytopathogen Rosellinia necatrix,23 except for the signals ascribable to oxymethines
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at δH 3.48 and δC 58.3, and at δH 2.87 and δC 60.9, respectively (Table 1). This
262
observation, along with a set of 2D NMR experiments (COSY, NOESY, HMQC and
263
HMBC) demonstrated that it was rosellichalasin21 bearing an epoxide function
264
between C-13 and C-14. This assumption was subsequently supported by the key
265
HMBC correlations of H-7 and H-15 with C-13, and of H-8 and H-16 with C-14. The
266
relative configuration of 3 was determined by interpretation of its NOESY spectrum
267
(Figure 3) and coupling constants. The NOE correlations from H-5 to H-4 and H-8,
268
from H-10 to H-4, and from CH3-12 to CH3-11 and H-7 oriented H-4, H-5 and H-8 on
269
the same side of the cyclohexane ring. The small vicinal coupling constant (1.7 Hz)
270
between H-13 and H-14 suggested the trans-oriented epoxy ring as depicted in 3,24
271
which resembled that in 19,20-epoxycytochalasin R.25 Thus, the stereochemistry of
272
13,14-epoxide was established as shown (Figure 1). Simultaneously, strong NOE
273
correlations from H-7 to CH3-12 and H-13, and from H-14 to H-8 and H-16 tamped
274
this speculation much further. The NOE correlations from H-20 to CH3-23 revealed
275
the E configuration of the C-18/C-19 double bond. A single crystal of 3 for X-ray
276
diffraction could not be obtained because of paucity of the sample. The absolute
277
configuration of 3 was then assigned by means of a well-established procedure26,27
278
based on the comparison of experimental and calculated CD spectra, as shown in
279
Figure 4. The CD spectrum recorded in methanol was well reproduced by calculations
280
run
281
CAM-B3LYP/def2-TZVP level, including a solvent model (IEF-PCM) for methanol.
with
time-dependent
density
functional
theory
13
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at
the
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The input structures were obtained after a conformational search with molecular
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mechanics and DFT geometry optimization at the B97X-D/6-311+G(d,p) level with
284
PCM for methanol. The preferred folding adopted by the macrocyle in the optimized
285
structures (see lowest-energy structure in Figure 3) is in keeping with NMR data, in
286
particular the NOE between H-16 and H-19. A good agreement between experimental
287
and calculated CD spectra was observed for the (3S)-3 absolute configuration. The
288
similarity factor28 for this enantiomer was 0.87, while it was only 0.0012 for the
289
opposite enantiomer. Thus, the absolute configuration of 3 was safely assigned as
290
(+)-(3S,4S,5S,6R,7S,8S,9S,13R,14R,16S)-3.
291
Hydroxyldecandrin G (4) was obtained as a light-yellow solid with a molecular
292
formula of C20H28O4, as accommodated by its Na+-liganded molecular ion at m/z
293
355.1885 (C20H28O4Na requires 355.1880) in its high-resolution electrospray
294
ionization mass spectrometry (HR-ESI-MS). The 1H and
295
similar to those of the decandrin G,29 if exempting the proton signal at δH 3.75 (ddd, J
296
= 12.1, 9.7, 4.6 Hz) and δC 69.2 (Table 2). This observation could only be explained
297
by assuming the attachment to C-2 of the hydroxyl group based on the consideration
298
of its molecular formula. This assumption was subsequently supported by the
299
interpretation of its 2D NMR spectra (HSQC, COSY and HMBC), which allowed the
300
exact assignment of all 1H and
301
CH3-18 to H-5 and H-3, and from H-2 to CH3-19 and CH3-20, along with the
302
coupling constant between H-2 and H-3 (J = 9.7 Hz) revealed the relative
303
configuration of 4. According to the in situ dimolybdenum CD method developed by
13C
13C
NMR data of 4 were
NMR signals. The NOESY correlations from
14
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Snatzke and Frelek,19,20 the absolute configurations of C-2 and C-3 in 4 were
305
determined as 2S,3S by the positive Cotton effect observed at 310 nm in their
306
Mo2(OAc)4-induced circular dichroism (ICD) spectrum, which ultimately permitted
307
assignment of the (+)-(2S,3S,5S,10R)-4 configuration (Figure 5).
308
The four known cytochalasins were identified as 10-phenyl-[12]-cytochalasins Z16
309
(5) and Z17 (6),21 cytochalasin K (7),30 and cytochalasin E (8),31 by comparison of 1H
310
and 13C NMR as well as mass spectrometric data with published data.
311 312
Allelopathic Activity.
313
All the isolated compounds 1−8 were evaluated for the allelopathic activities against
314
turnip (Raphanus sativus) and wheat (Triticum aestivum) according to our previously
315
reported methods.11,17 As shown in Table 3, all the tested compounds, to certain extent,
316
displayed potential inhibition on the shoot and root elongation of T. aestivum (RI
317
values ranging from − 0.02 to − 0.87 at 6.25 and 100 μM, respectively). It was rather
318
remarkable that compounds 3, 4 and 7 exhibited strong inhibition against the shoot
319
elongation with the IC50 values of 18.92 ± 0.80, 23.58 ± 0.43, and 24.02 ± 0.51 μM,
320
and compounds 5, 7 and 8 showed the similar inhibitory effects on the root elongation
321
with the IC50 values of 17.35 ± 0.05, 22.58 ± 0.58 and 19.74 ± 0.09 μM, respectively.
322
In particular, these compounds were tested to be comparable to glyphosate, a
323
commercial herbicide co-assayed as the positive control (Table 4).
324
The tested compounds 7 and 8 indicated the excellent inhibition toward the root
325
elongation of R. sativus with the IC50 values of 36.75 ± 0.09 and 1.57 ± 0.21 μM, 15
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respectively, which were more potent than the positive control (Table 4). The strong
327
inhibitory effect of compound 8 on root elongation of R. sativus was in accordance
328
with our previous results.16 However, both compounds revealed weak growth
329
inhibition on shoot elongation of R. sativus with the IC50 values > 100 μM. In addition,
330
other compounds 1−6 were demonstrated to have no inhibition on both shoot and root
331
elongation of R. sativus by the inhibition rates of almost < 30% at 100 μM (data not
332
shown). Interestingly enough, compounds 5 and 7 exhibited the growth-promoting
333
activities on the shoot elongation of R. sativus with the RI values of 0.10 and 0.18 at
334
the lower concentrations of 6.25 and 12.5 μM, respectively.
335
In conclusion, this work describes seven cytochalasins derivatives including three
336
new structures, and a new abietane-type diterpenoid from the endophytic fungus
337
Xylaria sp. XC-16 and clarifies in particular the allelopathic activity of these
338
chemicals. Notably, compound 8 showed more than 50-fold inhibition effect on root
339
elongation of R. sativus compared with the positive control, and compound 5 strongly
340
suppressed the root elongation of T. aestivum without any inhibition of R. sativus,
341
indicating the good selectivity toward different herbaceous plants. In addition, both
342
compounds 5 and 7 can stimulate shoot elongation of R. sativus at lower
343
concentration. Recent study revealed the disruption of actin cytoskeleton by
344
cytochalasins,9 which indicated the significant cytotoxicity to eukaryotic cells, and
345
precluded the use of these metabolites in biotechnological application. Thus, it would
346
be necessary to find an agent with low cytotoxicity and strong allelopathic effects.
347
The present work not only offers the potential allelochemicals, but also provides 16
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structure templates for pharmaceutical and synthetic chemists to develop more potent
349
lead compounds in the herbicide discovery efforts.
350 351
ASSOCIATED CONTENT
352
Supporting Information
353
1D and 2D NMR spectra of 1–4. This material is available free of charge via the
354
Internet at http://pubs.acs.org.
355
AUTHOR INFORMATION
356
Corresponding Author
357
* (J.-M.G.) Phone: +86-29-87092335. E-mail:
[email protected].
358
ORCID
359
Jin-Ming Gao: 0000-0003-4801-6514
360
Gennaro Pescitelli: 0000-0002-0869-5076
361
Author Contributions
362
# W.
363
Funding
364
This work was financially supported by the National Natural Science Foundation of
365
China (21702169), Natural Science Basic Research Plan in Shaanxi Province of China
366
(2018JQ2009, 2014JZ2-001), the Program of Unified Planning Innovation
367
Engineering of Science & Technology in Shaanxi Province (No.2015KTCQ02-14),
368
and Scientific Research Foundation of Northwest A&F University (Z111021702).
369
Acknowledgements
B. Han and Y. J. Zhai contributed equally to this work.
17
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G.P. acknowledges the CINECA award under the ISCRA initiative for the availability
371
of high-performance computing resources and support.
372
Notes
373
The authors declare no competing financial interest.
374
REFERENCES
375
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Gerards, M.; Morzycki, J. W.; Szczepek, W. J.; Frelek, J. Practical method for the absolute
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configuration assignment of tert/tert 1,2-diols using their complexes with Mo2(OAc)4. J. Org.
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1616 – 1621.
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10-Phenyl-[12]-cytochalasins Z7, Z8, and Z9 from the marine-derived fungus Spicaria elegans. J.
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produced by Rosellinia necatrix. Agric. Biol. Chem. 1989, 53, 1699 – 1701.
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New cytochalasins from the fungus Xylaria hypoxylon. Tetrahedron, 1997, 53, 6485 – 6492.
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443
configurations by TDDFT calculations of ECD spectra. Chirality 2016, 28, 466 – 474.
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(27) Superchi, S.; Scafato, P.; Gorecki, M.; Pescitelli, G. Absolute configuration determination by
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quantum mechanical calculation of chiroptical spectra: basics and applications to fungal
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(30) Steyn, P. S.; van Heerden, F. R.; Rabie, C. J. Cytochalasins E and K, toxic metabolites from
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Aspergillus clavatus. J. Chem. Soc. Perkin Trans. 1 1982, 541 – 544.
454
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Hunt, N.; Wogan, G. N. Structure of cytochalasin E, a toxic metabolite of Aspergillus clavatus. J.
456
Am. Chem. Soc. 1973, 95, 5423 – 5425.
457 458 21
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459 460 461 462 463 464
Figure captions
465 466
Figure 1. Structures of 1 – 8.
467
Figure 2. X-ray crystallography of 1 (upper) and 2 (bottom).
468
Figure 3. Selected 1H−1H COSY, HMBC (up) and NOESY correlations of 3 (down).
469
Figure 4. Experimental CD spectrum of (+)-3 in methanol (2.1 mM, 0.5 cm cell)
470
compared with the spectrum calculated on (3S,4S,5S,6R,7S,8S,9S,13R,14R,16S)-3 at
471
the TD-CAM-B3LYP/def2-TZVP level as Boltzmann-weighted average over 3
472
conformers optimized at the ɷB97X-D/6-311+G(d,p) level, including PCM solvent
473
model for MeOH. Plotting parameters: Gaussian band-width 0.35 eV; wavelength
474
shift +3 nm; scaled by a factor 2.
475
Figure 5. ICD spectrum of 4 in DMSO containing Mo2(OAc)4 with the inherent CD
476
subtracted (up), and Newman projection of Mo-complexes of 4 (down).
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478 479 12
O
11 1'
3'
H
10
OH
7
O
22
5 13
9 3
HN
1
5'
15
H
O 17
O 21 O O
O
OH
HN
19 23
1
H
OH
HN
O O O
O
H H
H
O
O O O 3
2 16 13
11 20
1
HO
9
5 18
7
H
O
HN
19
4
O
O
O
O
O
HN
OH
O O
O O
8
481 482 483
O O O O 6
H
7
480
HN
O O O
OH O O
H
5
H HN
OH
OH
17
14
H
10
3
HO
OH 15
Figure 1
23
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O OH
Journal of Agricultural and Food Chemistry
485
486 487
1
488 489 490
2 Figure 2
491 492 493
24
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O O
H
H
O O
HN
O
COSY
O HMBC
NOE
494 495 496
Figure 3
25
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498 499
Figure 4
26
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501
502 503 504
Figure 5
505 506 507 508 509 510 511 512 513 514 515 27
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516 517
Table 1. NMR Spectroscopic Data of 1 − 3 in CDCl3 1 δC 1
2
δH (mult, J in Hz)
δC
170.4
172.1 5.93, br s
2
δH (mult, J in Hz)
3 δC
δH (mult, J in Hz)
170.5 6.04 br s
5.79, br s
3
56.6
3.58, m
56.9
3.74 ddd (7.6, 7.2, 1.8)
54.7
3.68, m
4
48.0
3.19 d (1.8)
47.5
3.19 d (1.8)
50.6
2.55, t (4.1)
5
62.8
62.2
36.2
2.00, qd (7.3, 4.1)
6
64.2
64.4
56.1
7
69.2
3.59, d (10.4)
70.5
3.68 d (10.4)
58.1
2.88, d (5.2)
8
46.8
3.40 t (10.4)
46.2
3.39 t (10.4)
48.8
1.61, dd (8.8, 5.2)
9
83.2
10
43.0
84.0 3.02, dd (13.3, 8.8)
43.3
2.92, dd (13.3, 5.6)
83.7 2.96, dd (13.2, 7.2)
43.5
2.92, dd (13.2, 7.6)
3.08, dd (13.4, 9.5) 2.90, dd (13.4, 4.4)
11
20.2
1.33 s
20.7
1.25, s
13.6
1.13, d (7.3)
12
14.1
1.42, s
14.5
1.38, s
20.1
1.31, s
13
124.8
5.77 ddd (15.1, 10.4, 1.4)
123.6
6.11, dd (15.1, 10.4)
58.3
3.48, dd (8.8, 1.7)
137.9
5.62, ddd (15.1, 11.0, 3.8)
140.7
5.27, ddd (15.1, 10.1,
60.9
2.87, m
38.4
2.08, br d (15.2)
14 15
4.2) 39.8
2.26 ddd (14.0, 3.8, 2.0)
42.8
2.10, m
2.08 dt (14.0, 11.0) 16
39.5
17
1.42, m 32.0
1.62, m
36.1
205.1
78.6
3.82, t (3.7)
204.6
18
142.8
42.7
2.76, m
142.1
19
132.0
6.40, t (8.0)
156.5
7.00, dd (16.0, 4.8)
130.9
6.75, t (8.2)
20
36.6
3.30, dd (12.4, 8.0)
121.3
5.71, dd (16.0, 1.7)
35.4
3.29, dd (14.4, 8.2)
3.30, m
3.13, dd (12.4, 8.0)
3.51, m
3.22, dd (14.4, 8.2)
21
168.7
166.5
168.8
22
17.6
1.17, d (6.8)
18.4
0.98, d (7.4)
18.7
1.17, d (6.8)
23
12.6
1.84, s
8.7
1.05, d (6.6)
12.2
1.89, s
1’
136.9
2’
129.2
7.18 d (7.1)
129.2
7.17 d (7.1)
129.2
7.21, d (7.3)
3’
129.1
7.35 t (7.1)
129.0
7.34 t (7.1)
129.1
7.35, t (7.3)
4’
127.3
7.28 t (7.1)
127.1
7.27 t (7.1)
127.3
7.29, t (7.3)
5’
129.1
7.35 t (7.1)
129.0
7.34 t (7.1)
129.1
7.35, t (7.3)
6’
129.2
7.18 d (7.1)
129.2
7.17 d (7.1)
129.2
7.21, d (7.3)
137.0
137.3
518 519 28
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520 521 522
Table 2. NMR Spectroscopic Data of 4 in MeOH-d4 4
1
δC
δH, multi (J in Hz)
45.6
1.48, t (12.1) 2.57, dd (12.1, 4.6)
2
69.2
3.75, ddd (12.1, 9.7, 4.6)
3
83.4
2.95, d (9.7)
4
40.4
5
50.1
1.83, dd (13.9, 4.0)
6
36.9
2.59, dd (18.1, 4.0) 2.68, dd (18.1, 13.9)
7
201.2
8
131.1
9
154.9
10
39.9
11
125.0
7.33, d (8.3)
12
132.4
7.64, dd (8.3, 2.2)
13
149.4
14
124.1
15
72.6
16
31.7
1.42, s
17
31.7
1.42, s
18
28.5
0.98, s
19
16.7
0.88, s
20
24.6
1.20, s
7.98, d (2.2)
523
29
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525 526
Table 3. Allelopathic effects on wheat (Triticum aestivum) of Compounds 1 − 8 a germination rate compds
6.25 μM
root elongation (RI)
100 μM
6.25 μM
100 μM
6.25 μM
1
0.83 ± 0.06
0.92 ± 0.06
-0.47 ± 0.05
-0.30 ± 0.05
-0.52 ± 0.03
-0.02 ± 0.02
2
0.67 ± 0.05
0.83 ± 0.06
-0.54 ± 0.05
-0.07 ± 0.01
-0.51 ± 0.04
-0.04 ± 0.02
3
0.92 ± 0.06
0.92 ± 0.05
-0.69 ± 0.04
0.00 ± 0.00
-0.87 ± 0.07
-0.09 ± 0.05
4
0.83 ± 0.05
0.92 ± 0.05
-0.66 ± 0.04
-0.38 ± 0.10
-0.62 ± 0.02
-0.13 ± 0.04
5
0.67 ± 0.06
0.83 ± 0.05
-0.58 ± 0.05
-0.16 ± 0.06
-0.74 ± 0.02
-0.36 ± 0.04
6
0.92 ± 0.00
0.67 ± 0.05
-0.45 ± 0.02
-0.14 ± 0.00
-0.41 ± 0.03
-0.27 ± 0.02
7
0.50 ± 0.02
0.92 ± 0.05
-0.72 ± 0.06
-0.44 ± 0.00
-0.78 ± 0.02
-0.07 ± 0.02
8
0.83 ± 0.06
0.83 ± 0.05
-0.65 ± 0.05
-0.07 ± 0.01
-0.80 ± 0.02
-0.29 ± 0.02
0.83 ± 0.06
0.92 ± 0.05
-0.53 ± 0.06
0.14 ± 0.04
-0.57 ± 0.02
-0.07 ± 0.01
0.92 ± 0.05
0.83 ± 0.00
Glyphosate b Ck
527
100 μM
shoot elongation (RI)
a
c
Mean ± SD. b Positive control. c Blank control.
528 529 530 531
Table 4. Inhibitory effects on turnip (Raphanus sativus) and wheat (Triticum aestivum) of
532
Compounds 1 – 8 (IC50 in μM) a
533
shoot elongation compds
534 535 536 537
turnip
wheat
turnip
>100
NA
wheat
1
NA
2
NA
98.70 ± 0.19
NA
3
NA
18.92 ± 0.80
NA
40.28 ± 0.19
4
NA
23.58 ± 0.43
NA
52.06 ± 0.16
5
>100
84.05 ± 0.27
>100
17.35 ± 0.05
6
NA
7
99.42 ± 0.16
8 Glyphosate a
b
root elongation
>100 c
Mean ± SD.
99.88 ± 5.31 b
>100
79.27 ± 0.26 >100
NA
>100
24.02 ± 0.51
36.75 ± 0.09
22.58 ± 0.58
46.58 ± 0.19
1.57 ± 0.21
19.74 ± 0.09
42.31 ± 0.66
83.09 ± 0.09
38.11 ± 0.29
Not activity (Inhibition rates < 30% at 100 μM).
control.
30
ACS Paragon Plus Environment
c
Positive
Page 31 of 31
Journal of Agricultural and Food Chemistry
539
TOC 540 541 OH
12
O
11 1'
10
OH
7 9
3
HN O
1
13
15
O 21 19 O O 1
542
O 23
2
Xylaria sp. XC-16
O 4
OH O O O
H
HO
17
OH
H HN
HO
22
5
H
eight allelochemicals
543 544 545
31
ACS Paragon Plus Environment