Cytochalasins and an Abietane-Type Diterpenoid with Allelopathic

Mar 15, 2019 - Bioactivity-guided isolation of the cultures of the endophytic fugus Xylaria sp. XC-16 residing in a deciduous tree Toona sinensis led ...
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Bioactive Constituents, Metabolites, and Functions

Cytochalasins and an Abietane-Type Diterpenoid with Allelopathic Activities from the Endophytic Fungus Xylaria sp. Wen-Bo Han, Yi-Jie Zhai, Hui-Yi Zhou, Jian Xiao, Jin-Ming Gao, Yuqi Gao, and Gennaro Pescitelli J. Agric. Food Chem., Just Accepted Manuscript • DOI: 10.1021/acs.jafc.9b00273 • Publication Date (Web): 15 Mar 2019 Downloaded from http://pubs.acs.org on March 17, 2019

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Cytochalasins and an Abietane-Type Diterpenoid with Allelopathic

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Activities from the Endophytic Fungus Xylaria sp.

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Wen-Bo Han,†,# Yi-Jie Zhai,†,# Yuqi Gao,† Hui-Yi Zhou,† Jian Xiao,‡ Gennaro

4

Pescitelli,§

5

†Shaanxi

6

Chemistry and Pharmacy, Northwest A&F University, Yangling 712100, P. R. China

7



8

Engineering, Baoji University of Arts and Sciences, Baoji 721013, P. R. China

9

§ Dipartimento

10

and Jin-Ming Gao*†

Key Laboratory of Natural Products & Chemical Biology, College of

Shaanxi Key Laboratory of Phytochemistry, College of Chemistry and Chemical

di Chimica e Chimica Industriale, Università di Pisa, via Risorgimento

35, I-56126 Pisa, Italy

11

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Corresponding author:

13

Prof. Dr. Jin-Ming Gao. Tel.: +86-29-87092335

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E-mail: [email protected]

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ABSTRACT: Bioactivity-guided isolation of the cultures of the endophytic fugus

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Xylaria sp. XC-16 residing in a deciduous tree Toona sinensis led to the discovery of

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four new allelochemicals (1–4) including three cytochalasins, epoxycytochalasin Z17

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(1), epoxycytochalasin Z8 (2), epoxyrosellichalasin (3), and an abietane-type

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diterpenoid, hydroxyldecandrin G (4), along with four known analogues,

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10-phenyl-[12]-cytochalasins Z16 (5) and Z17 (6), cytochalasin K (7), and cytochalasin

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E (8). The structures of these compounds were elucidated by comprehensive

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spectroscopic methods, and their absolute configurations were determined by

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electronic circular dichroism (CD) and X-ray diffraction. All the chemicals were

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tested for their allelopathic effects on the turnip (Raphanus sativus) and wheat

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(Triticum aestivum). Notably, compounds 3, 4 and 7 strongly inhibited wheat shoot

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elongation, and compounds 5, 7 and 8 inhibited wheat root elongation, showing

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comparable IC50 values to the positive control glyphosate. Meanwhile, compound 8

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was a potential inhibitor on turnip root elongation with the IC50 value of 1.57 ± 0.21

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μM, which was 50-fold more potent than glyphosate. Nevertheless, compounds 5 and

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7 stimulated the turnip shoot elongation at lower concentrations.

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KEYWORDS: Xylaria sp.; cytochalasins; diterpenoid; allelopathic activities;

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herbicides; phytotoxicity; endophyte

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INTRODUCTION

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Endophytes are defined as endosymbiotic microorganisms that inhabit in the tissue of

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plant without causing any damage to their hosts. They are widely distributed

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mutualists that protect the host plants from pathogenic microbial attack or other

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hostile environments by producing a great diversity of secondary metabolites or

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hydrolytic enzymes, which play an important role in agrochemical and

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pharmaceutical industries.1−3 The genus Xylaria comprises several hundreds of

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species and most of them are known from collections of stromata on dead wood.4,5

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Fungi of this genus are widespread in vascular/nonvascular plants in their asexual

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stage (known as fungal endophytes), which synthesizes various bioactive secondary

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metabolites viz. terpenoids, cytochalasins, alkaloids, polyketides, volatile organic

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compounds and many more.5 These metabolites have exhibited a wide spectrum of

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potential activities such as cytotoxic, antibacterial, antimalarial and α-glucosidase

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inhibitory activity.5

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The

cytochalasins

represent

a

diverse

group

of

fungal

polyketide

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synthase-nonribosomal peptide synthetase (PKS-NRPS) hybrid metabolites with

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multiple biological functions that have been isolated from various fungi including

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Aspergillus, Phomopsis, Chaetomium, Xylaria, Rosellinia, Zygosporium.2,6 Many

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cytochalasins, such as cytochalasin A and B, the first characterized compounds, were

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reported to inhibit the polymerization of actin, cytochalasin H was shown to regulate

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plant growth, cytochalasin D was demonstrated to inhibit protein synthesis and 3

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cytochalasin E was shown to prevent angiogenesis.7 Recently, some cytochalasins

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have been shown to inhibit the biofilm formation of Staphylococcus aureus,8 and to

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disrupt the actin cytoskeleton of eukaryotic cells.9 During our research on the

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endophytic fungi for new agrochemicals,10−15 an extract derived from the endophytic

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fungus Xylaria sp. XC-16, isolated from a deciduous tree Toona sinensis (family

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Meliaceae),16 based on the OSMAC (one strain–many compounds) strategy,17 was

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found to be allelopathic towards two herbaceous plants turnip (Raphanus sativus) and

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wheat (Triticum aestivum) used for allelochemical assays.17,18 To identify more potent

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allelochemicals with unforeseeable frameworks, a repetitive chromatographic

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fractionation of the extract from the title fungus gave three new cytochalasin

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derivatives (1−3) and a new abietane-type diterpenoid (4), along with four known

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cytochalasins (5−8) (Figure 1). Herein, we present the isolation, the structure

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determination and the allelopathic activities of these compounds.

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MATERIALS AND METHODS

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General Experimental Procedures

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Optical rotations were recorded on an Autopol III automatic polarimeter (Rudolph

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Research Analytical, NJ, USA). UV measurements were obtained using a UV−vis

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Evolution 300 spectrometer. (Thermo Fisher Scientific Inc., MA, USA). IR spectra

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were measured on a Bruker Tensor 27 spectrophotometer (Bruker Optics,

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Rheinstetten, Germany) with KBr pellets. ECD spectra were performed on a

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Chirascan spectrometer (Applied Photophysics Ltd., Leatherhead, Surrey, U.K.).

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NMR spectra were obtained on a Bruker Avance III 500 Spectrometers (Bruker 4

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BioSpin, Rheinstetten, Germany) with tetramethylsilane (TMS) as an internal

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standard at room temperature. High-resolution (HR) ESI-MS spectra were recorded

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on an Agilent 6520 Accurate-Mass Q-TOF LC/MS spectrometer. Silica gel (200−300

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or 300–400 mesh, Qingdao Marine Chemical Ltd., China), RP-18 gel (20–45 μm, Fuji

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Silysia Chemical Ltd., Japan) and Sephadex LH-20 (Amersham Biosciences Inc.,

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Shanghai, China) were used for column chromatography (CC). Fractions were

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monitored by TLC, and compounds were visualized by spraying with 10% H2SO4 in

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ethanol followed by heating. Semi-preparative RP-HPLC was analyzed by a Waters

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1525EF (Waters Corp., MA, USA) liquid chromatography system equipped with a

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Hypersil BDS C18 column (4.6 mm × 250 mm; 10.0 mm × 250 mm). All other

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chemicals used in this study were of analytical grade.

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Cultivation and Extraction

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The strain Xylaria sp. XC-16 used in this investigation was described earlier.16 The

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producing strain was cultured on a plate of potato dextrose agar (PDA) medium at 28

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± 0.5 °C for 5 days. Then one piece (approximately 5 mm2) of mycelium was

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vaccinated aseptically with 100 mL Erlenmeyer flasks each containing 30 mL of PD

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liquid medium. and the seed liquids were cultivated at 28 °C for 3 days on a shaking

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table at 120 rpm. A suspension (200 μL) of the seed liquid was inoculated cultivated

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to a KM solid medium (corn pieces 32.9%, rice hull 49.3%, wheat bran 16.7%,

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MgSO4 0.6%, KH2PO4 0.6%, with 30 mL of distilled water) in 300 Erlenmeyer flasks

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(500 mL each). After a subsequent fermentation at 28 °C for 28 days, cultures were

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ultrasonically extracted four times with methanol and acetone. The solvent was 5

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removed and dried under reduced pressure to yield a crude extract. The extract was

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dissolved in 90% MeOH-H2O (3 L) and further treated three times with petroleum

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ether, and the remaining layer was extracted by EtOAc and concentrated under

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vacuum to give a crude extract (58.2 g).

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Isolation of metabolites 1−8

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The crude extract was subjected to chromatography over a silica gel column

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followed by a stepwise gradient elution with CHCl3-MeOH (v/v, 100:0 → 0:100) to

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provide four fractions A~E. Fraction B was further purified by a RP-18 column eluted

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with a gradient of MeOH-H2O (v/v, 30% → 100%) to obtain four fractions (B-1~B-4).

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Fraction B-3 was subjected to silica gel CC eluting with a gradient of CHCl3-MeOH

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(70:1 →10:1) and Sephadex LH-20 (MeOH), and further purified by RP-HPLC with

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MeOH-H2O (42:58) to yield compound 4 (tR = 21.0 min, 11.0 mg). Fraction C was

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further chromatographed on Sephadex LH-20 eluted with MeOH to obtain seven

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fractions (C-1~C-7). Fraction C-4 was separated by a RP-18 column eluted with a

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gradient of MeOH-H2O (v/v, 20% → 100%), and further purified by RP-HPLC with

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MeCN-H2O (65:35) to yield compounds 2 (tR = 19.0 min, 3.4 mg) and 7 (tR = 21.5

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min, 3.8 mg). Fraction C-5 was subjected to a RP-18 column eluted with a gradient of

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MeOH-H2O (v/v, 20% →100%) and next purified by RP-HPLC with MeCN-H2O

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(70:30) to afford compounds 1 (tR = 15 min, 4.2 mg) and 5 (tR = 16.5 min, 4.4 mg).

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Fraction C-6 was isolated on the Sephadex LH-20 and then applied to RP-HPLC with

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MeCN-H2O (65:35) to give 8 (tR = 19 min, 4.5 mg), 6 (tR = 22.5 min, 3.9 mg) and 3

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(tR = 24 min, 3.1 mg). 6

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Epoxycytochalasin Z17 (1): colorless prisms; [α]D20 +48 (c 0.013, CH3OH); UV

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(MeOH) λmax (log ε) 206 (3.65), 243 (3.10); IR (KBr) νmax 3425, 2921, 2349, 1713,

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1660, 1448, 1317, 1222, 1027, 981 cm−1; HR-ESI-MS: m/z: 502.2206 [M + Na]+

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(calcd. for C28H33NO6Na, 502.2200); 1 H and

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Table 1.

13

C NMR data assigned and listed in

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Epoxycytochalasin Z8 (2): colorless needles; [α]D20 +4.4 (c 0.050, CH3OH); UV

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(MeOH) λmax (log ε) 208 (2.91); IR (KBr) νmax 3437, 2939, 2351, 2246, 1707, 1454,

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1234, 1112, 1022 cm−1; HR-ESI-MS: m/z: 504.2353 [M + Na]+ (calcd. for

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C28H35NO6Na, 504.2357); 1 H and 13 C NMR data assigned and listed in Table 1.

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Epoxyrosellichalasin (3): white solid powder; [α]D20 +4.0 (c 0.025, CH3OH); UV

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(MeOH) λmax (log ε) 205 (3.57), 228 (3.13); IR (KBr) νmax 3420, 2923, 2854, 2350,

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1712, 1665, 1451, 1380, 1232, 1032 cm−1; HR-ESI-MS: m/z: 502.2201 [M + Na]+

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(calcd. for C28H33NO6Na, 502.2200); 1 H and

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Table 1.

13

C NMR data assigned and listed in

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Hydroxyldecandrin G (4): light-yellow solid; [α]D20 +16.7 (c 0.030, CH3OH); UV

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(MeOH) λmax (log ε) 209 (3.63), 249 (3.19), 293 (2.44); IR (KBr) νmax 3428, 2965,

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2349, 2247, 1666, 1558, 1211, 1105, 1024, 651 cm−1; HR-ESI-MS: m/z: 355.1885 [M

145

+ Na]+ (calcd. for C20H28O4Na, 355.1880); 1 H and 13 C NMR data assigned and listed

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in Table 1.

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Crystal data of epoxycytochalasin Z17 (1): C28H33NO6, Mr =479.55 prism from

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MeOH, space group I 1 2 1, a = 26.2205(6) Å, b = 7.5143(1) Å, c = 27.6723(5) Å, V =

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5045.40 (17) Å3, Z = 8, μ = 0.719 mm-1 and F(000) = 2048.0; T = 172.99(10); crystal 7

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dimensions: 0.10 × 0.08 × 0.05 mm3; R = 0.037, wR = 0.102, S = 1.022; Flack

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parameter = 0.23(7); Crystallographic

152

the

data

for

1

has

been

deposited

at

Cambridge Crystallographic Data Center with the number CCDC-1886353.

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Crystal data of epoxycytochalasin Z8 (2): C28H35NO6, Mr =481.57 needle from

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MeOH, space group P 1 21 1, a = 7.2257(2) Å, b = 14.0039(4) Å, c = 13.4952(3) Å, V

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= 1324.42(6) Å3, Z = 2, μ = 0.685 mm-1 and F(000) = 516.0; T = 173(2); crystal

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dimensions: 0.13 × 0.05 × 0.04 mm3; R = 0.041, wR = 0.107, S = 1.107; Flack

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parameter = 0.01(15); CCDC-1886352.

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Determination of the Absolute Configuration of the 2, 3-Diol Units in Compound

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4 by Snatzke’s and Frelek’s Method.

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According to the published procedure,19,20 a 1:1.2 mixture of diol/Mo2(OAc)4 was

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subjected to ECD measurements at a concentration of 0.5 mg/mL for compound 4.

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The first ECD spectrum was recorded immediately after mixing, and its evolution was

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monitored over time until the signal was stationary (approximately 2 h after mixing).

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The inherent ECD was subtracted. The observed sign of the diagnostic band at 310 −

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340 nm in the induced ECD spectrum was correlated to the absolute configuration of

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the 2, 3-diol unit.

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Allelopathic Activity Bioassay.

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The seeds of two herbaceous plants, turnip (Raphanus sativus) and wheat (Triticum

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aestivum) were used for the bioassay according to the previously reported

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procedure.11,17 The plant seeds were washed by running water for 2 h, dipped in 0.5%

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KMnO4 for 20 min, and washed until they were colorless. Glyphosate was selected as 8

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the positive control, the compounds and blank solvent MeOH were added to 12-well

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plates to make the final concentrations of 100 and 6.25 μM. After the evaporation of

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MeOH, the plant seeds were put into the 12-well plates and irrigated with deionized

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water. Triplicate experiments were conducted. The plates were then cultivated 48 h

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under 25 °C. The germination rates were calculated according to eq 1, and the

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allelopathic effects [response index (RI)] were calculated according to the equation 2:

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germination rate (%) = (number of germinated seeds) / (total number of seeds) (1)

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If T > C, then RI = 1 − C/T; if T < C, then RI = T/C – 1

(2)

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where T is the length of the treatment, C is the length of the blank control, and RI is

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the response index (RI > 0 means stimulation effect, and RI < 0 means inhibition

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effect). RIs are expressed as averages ± standard deviation (SD) for three replicates.

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The data analysis was performed using SPASS 17.0 software.

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Computational Section.

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Molecular mechanics and preliminary Density Functional Theory (DFT) calculations

186

were run with Spartan’16 (Wavenfunction, Irvine, CA, USA, 2016) with default

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parameters, default grids and convergence criteria; DFT and Time-Dependent DFT

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(TDDFT) calculations were run with Gaussian’16 (Revision A.03; Gaussian Inc.:

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Wallingford, CT, USA, 2016) with default grids and convergence criteria. The

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conformational search was run with the Monte Carlo algorithm implemented in

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Spartan’16 using Merck molecular force field (MMFF). All structures obtained

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thereof were optimized with DFT at the B97X-D/6-31G(d) level in vacuo, and

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reoptimized at the B97X-D/6-311+G(d,p) level including the polarizable continuum 9

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model (PCM) for MeOH in its Integral Equation Formalism (IEF) formulation. The

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above procedure afforded 3 minima for compound 3, the most stable of which had a

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population of >97%. TDDFT calculations were run with B3LYP and CAM-B3LYP

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functionals and def2-TZVP basis set, including PCM for MeOH. Average ECD

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spectra were computed by weighting the ECD spectrum calculated for each conformer

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with Boltzmann factors at 300K estimated from DFT internal energies. ECD spectra

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were plotted using the program SpecDis (version 1.71; Berlin: Germany, 2017;

201

http:/specdis-software.jimdo.com). Similarity factors were also estimated with

202

SpecDis.

203 204

RESULTS AND DISCUSSION

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Structure Identification of New Compounds

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Epoxycytochalasin Z17 (1) was obtained as colorless prisms, which was evidenced to

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have a molecular formula of C28H33NO6 from its Na+-liganded molecular ion at m/z

208

502.2206 (C28H33NO6Na requires 502.2200) in its high-resolution electrospray

209

ionization mass spectrometry (HR-ESI-MS). The 1H and

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revealed four methyls, three methenes and five methines. The 1H NMR resonance

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signals at δH 7.35 (t, J = 7.1 Hz), 7.28 (t, J = 7.4 Hz), 7.18 (d, J = 7.1 Hz) disclosed

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the presence of a monosubstituted benzene moiety in the molecule, which was

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supported by the chemical shifts at δc 127.3, 129.1 and 129.2 in the

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spectrum (Table 1). A pair of double bonds were indicated by the 1H NMR signals at

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δH 5.62 (ddd, J =15.1, 11.0, 3.8 Hz), 5.77 (ddd, J = 15.1, 10.4, 1.4 Hz) and 6.40 (t, J = 10

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13C

NMR spectra for 1

13C

NMR

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8.0 Hz) (Table 1). In the 13C NMR spectrum, the signals at δc 168.7, 170.4 and 205.1

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indicated the presence of three carbonyl groups in 1. The subsequent analysis of its 2D

218

NMR spectra including HSQC, COSY, and HMBC unambiguously pinpointed that 1

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was a cytochalasin derivative. Comparison of the 1H and

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those of the known cytochalasin Z17 21 demonstrated that the double bond between C-5

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and C-6 was epoxidized in 1. This was confirmed by the upfield chemical shifts of

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C-5 and C-6 at δc 62.8 and 64.2 in the

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correlations of CH3-11with C-4, C-5 and C-6, and of CH3-12 with C-6 and C-7 could

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further witness this change. The relative configuration of 1 was next established by

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NOESY experiment, coupled with comparison of the coupling constants described for

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the corresponding centers in cytochalasin Z17.21 Specially, the stereochemistry of

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5,6-epoxide function as shown in 1 was evidenced by the NOE correlations from

228

CH3-11 to H-3, and from CH3-12 to H-7. The large coupling constant of 10.4 Hz

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between H-7 and H-8 established the location of H-8 at an axial position. In addition,

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the NOE correlation from H-4 to H-8 indicated they were cofacial. The structure of 1

231

was confirmed by the single-crystal X-ray analysis (Cu Kα) leading to the

232

determination of its absolute configuration as (+)-(3S,4R,5R,6S,7S,8S,9R,16S)-1

233

(Figure 2).

13C

13C

NMR data of 1 with

NMR spectrum. Moreover, the HMBC

234

Epoxycytochalasin Z8 (2) isolated as colorless needles possessed a molecular

235

formula of C28H35NO6 from its Na+-liganded molecular ion at m/z 504.2353

236

(C28H35NO6Na requires 504.2357) in its high-resolution electrospray ionization mass

237

spectrometry (HR-ESI-MS). In other words, its formula has two more hydrogen 11

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atoms than that of compound 1. The 1H NMR and

239

similar to those of cytochalasin Z8 (Table 1).22 However, the molecular formula of 2

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allowed one extra O added compared to that of cytochalasin Z8. Specifically, the

241

singlets at δH 1.25 and 1.38 ascribed to CH3-11 and CH3-12 were both upfield

242

compared to those in cytochalasin Z8, which demonstrated that 2 was a 5,6-epoxide

243

cytochalasin Z8 derivative. These afore-mentioned structure elements were

244

subsequently substantiated by the HSQC, NOESY, and HMBC experiments, leading

245

to the unequivocal assignment of all 1H and

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stereochemistry of 2 was next established by NOESY experiment and coupling

247

constants. A large diaxial coupling constant (10.4 Hz) between H-7 and H-8 indicated

248

an axial configuration for H-7. The NOE correlations from H-7 to CH3-12, from H-4

249

to H-8, and from CH3-11 to H-3 demonstrated that H-4 and H-8 were cofacial, and

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H-3, H-7, CH3-11 and CH3-12 were on the opposite side of the cyclohexane ring.

251

Additionally, the NOE correlations from CH3-22 to H-17, and from CH3-23 to H-16

252

indicated the same orientation of CH3-22, H-17 and H-18. Thus, the structure of

253

compound 2 was determined as shown, and the absolute configuration of 2 was finally

254

confirmed as (+)-(3S,4R,5R,6S,7S,8S,9R,16S,17R,18S)-2 by single-crystal X-ray

255

diffraction analysis (Cu Kα) (Figure 2).

13C

13C

NMR spectra of 2 were very

NMR signals. The relative

256

Epoxyrosellichalasin (3) obtained as a white powder, exhibited a quasi-molecular

257

ion at m/z 502.2201 ([M+Na]+) in its high-resolution ESI mass spectrum

258

(HR-ESI-MS), demonstrating its molecular formula to be C28H33NO6. The 1H NMR

259

spectrum was very similar to that of rosellichalasin,21 a metabolite produced by the 12

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phytopathogen Rosellinia necatrix,23 except for the signals ascribable to oxymethines

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at δH 3.48 and δC 58.3, and at δH 2.87 and δC 60.9, respectively (Table 1). This

262

observation, along with a set of 2D NMR experiments (COSY, NOESY, HMQC and

263

HMBC) demonstrated that it was rosellichalasin21 bearing an epoxide function

264

between C-13 and C-14. This assumption was subsequently supported by the key

265

HMBC correlations of H-7 and H-15 with C-13, and of H-8 and H-16 with C-14. The

266

relative configuration of 3 was determined by interpretation of its NOESY spectrum

267

(Figure 3) and coupling constants. The NOE correlations from H-5 to H-4 and H-8,

268

from H-10 to H-4, and from CH3-12 to CH3-11 and H-7 oriented H-4, H-5 and H-8 on

269

the same side of the cyclohexane ring. The small vicinal coupling constant (1.7 Hz)

270

between H-13 and H-14 suggested the trans-oriented epoxy ring as depicted in 3,24

271

which resembled that in 19,20-epoxycytochalasin R.25 Thus, the stereochemistry of

272

13,14-epoxide was established as shown (Figure 1). Simultaneously, strong NOE

273

correlations from H-7 to CH3-12 and H-13, and from H-14 to H-8 and H-16 tamped

274

this speculation much further. The NOE correlations from H-20 to CH3-23 revealed

275

the E configuration of the C-18/C-19 double bond. A single crystal of 3 for X-ray

276

diffraction could not be obtained because of paucity of the sample. The absolute

277

configuration of 3 was then assigned by means of a well-established procedure26,27

278

based on the comparison of experimental and calculated CD spectra, as shown in

279

Figure 4. The CD spectrum recorded in methanol was well reproduced by calculations

280

run

281

CAM-B3LYP/def2-TZVP level, including a solvent model (IEF-PCM) for methanol.

with

time-dependent

density

functional

theory

13

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at

the

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The input structures were obtained after a conformational search with molecular

283

mechanics and DFT geometry optimization at the B97X-D/6-311+G(d,p) level with

284

PCM for methanol. The preferred folding adopted by the macrocyle in the optimized

285

structures (see lowest-energy structure in Figure 3) is in keeping with NMR data, in

286

particular the NOE between H-16 and H-19. A good agreement between experimental

287

and calculated CD spectra was observed for the (3S)-3 absolute configuration. The

288

similarity factor28 for this enantiomer was 0.87, while it was only 0.0012 for the

289

opposite enantiomer. Thus, the absolute configuration of 3 was safely assigned as

290

(+)-(3S,4S,5S,6R,7S,8S,9S,13R,14R,16S)-3.

291

Hydroxyldecandrin G (4) was obtained as a light-yellow solid with a molecular

292

formula of C20H28O4, as accommodated by its Na+-liganded molecular ion at m/z

293

355.1885 (C20H28O4Na requires 355.1880) in its high-resolution electrospray

294

ionization mass spectrometry (HR-ESI-MS). The 1H and

295

similar to those of the decandrin G,29 if exempting the proton signal at δH 3.75 (ddd, J

296

= 12.1, 9.7, 4.6 Hz) and δC 69.2 (Table 2). This observation could only be explained

297

by assuming the attachment to C-2 of the hydroxyl group based on the consideration

298

of its molecular formula. This assumption was subsequently supported by the

299

interpretation of its 2D NMR spectra (HSQC, COSY and HMBC), which allowed the

300

exact assignment of all 1H and

301

CH3-18 to H-5 and H-3, and from H-2 to CH3-19 and CH3-20, along with the

302

coupling constant between H-2 and H-3 (J = 9.7 Hz) revealed the relative

303

configuration of 4. According to the in situ dimolybdenum CD method developed by

13C

13C

NMR data of 4 were

NMR signals. The NOESY correlations from

14

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Snatzke and Frelek,19,20 the absolute configurations of C-2 and C-3 in 4 were

305

determined as 2S,3S by the positive Cotton effect observed at 310 nm in their

306

Mo2(OAc)4-induced circular dichroism (ICD) spectrum, which ultimately permitted

307

assignment of the (+)-(2S,3S,5S,10R)-4 configuration (Figure 5).

308

The four known cytochalasins were identified as 10-phenyl-[12]-cytochalasins Z16

309

(5) and Z17 (6),21 cytochalasin K (7),30 and cytochalasin E (8),31 by comparison of 1H

310

and 13C NMR as well as mass spectrometric data with published data.

311 312

Allelopathic Activity.

313

All the isolated compounds 1−8 were evaluated for the allelopathic activities against

314

turnip (Raphanus sativus) and wheat (Triticum aestivum) according to our previously

315

reported methods.11,17 As shown in Table 3, all the tested compounds, to certain extent,

316

displayed potential inhibition on the shoot and root elongation of T. aestivum (RI

317

values ranging from − 0.02 to − 0.87 at 6.25 and 100 μM, respectively). It was rather

318

remarkable that compounds 3, 4 and 7 exhibited strong inhibition against the shoot

319

elongation with the IC50 values of 18.92 ± 0.80, 23.58 ± 0.43, and 24.02 ± 0.51 μM,

320

and compounds 5, 7 and 8 showed the similar inhibitory effects on the root elongation

321

with the IC50 values of 17.35 ± 0.05, 22.58 ± 0.58 and 19.74 ± 0.09 μM, respectively.

322

In particular, these compounds were tested to be comparable to glyphosate, a

323

commercial herbicide co-assayed as the positive control (Table 4).

324

The tested compounds 7 and 8 indicated the excellent inhibition toward the root

325

elongation of R. sativus with the IC50 values of 36.75 ± 0.09 and 1.57 ± 0.21 μM, 15

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respectively, which were more potent than the positive control (Table 4). The strong

327

inhibitory effect of compound 8 on root elongation of R. sativus was in accordance

328

with our previous results.16 However, both compounds revealed weak growth

329

inhibition on shoot elongation of R. sativus with the IC50 values > 100 μM. In addition,

330

other compounds 1−6 were demonstrated to have no inhibition on both shoot and root

331

elongation of R. sativus by the inhibition rates of almost < 30% at 100 μM (data not

332

shown). Interestingly enough, compounds 5 and 7 exhibited the growth-promoting

333

activities on the shoot elongation of R. sativus with the RI values of 0.10 and 0.18 at

334

the lower concentrations of 6.25 and 12.5 μM, respectively.

335

In conclusion, this work describes seven cytochalasins derivatives including three

336

new structures, and a new abietane-type diterpenoid from the endophytic fungus

337

Xylaria sp. XC-16 and clarifies in particular the allelopathic activity of these

338

chemicals. Notably, compound 8 showed more than 50-fold inhibition effect on root

339

elongation of R. sativus compared with the positive control, and compound 5 strongly

340

suppressed the root elongation of T. aestivum without any inhibition of R. sativus,

341

indicating the good selectivity toward different herbaceous plants. In addition, both

342

compounds 5 and 7 can stimulate shoot elongation of R. sativus at lower

343

concentration. Recent study revealed the disruption of actin cytoskeleton by

344

cytochalasins,9 which indicated the significant cytotoxicity to eukaryotic cells, and

345

precluded the use of these metabolites in biotechnological application. Thus, it would

346

be necessary to find an agent with low cytotoxicity and strong allelopathic effects.

347

The present work not only offers the potential allelochemicals, but also provides 16

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structure templates for pharmaceutical and synthetic chemists to develop more potent

349

lead compounds in the herbicide discovery efforts.

350 351

ASSOCIATED CONTENT

352

Supporting Information

353

1D and 2D NMR spectra of 1–4. This material is available free of charge via the

354

Internet at http://pubs.acs.org.

355

AUTHOR INFORMATION

356

Corresponding Author

357

* (J.-M.G.) Phone: +86-29-87092335. E-mail: [email protected].

358

ORCID

359

Jin-Ming Gao: 0000-0003-4801-6514

360

Gennaro Pescitelli: 0000-0002-0869-5076

361

Author Contributions

362

# W.

363

Funding

364

This work was financially supported by the National Natural Science Foundation of

365

China (21702169), Natural Science Basic Research Plan in Shaanxi Province of China

366

(2018JQ2009, 2014JZ2-001), the Program of Unified Planning Innovation

367

Engineering of Science & Technology in Shaanxi Province (No.2015KTCQ02-14),

368

and Scientific Research Foundation of Northwest A&F University (Z111021702).

369

Acknowledgements

B. Han and Y. J. Zhai contributed equally to this work.

17

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370

G.P. acknowledges the CINECA award under the ISCRA initiative for the availability

371

of high-performance computing resources and support.

372

Notes

373

The authors declare no competing financial interest.

374

REFERENCES

375

(1) Gao, J.-M., Yang, S.-X.; Qin, J.-C. Azaphilones: Chemistry and Biology. Chem. Rev. 2013,

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113, 4755-4811.

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(9) Kretz, R.; Wendt, L.; Wongkanoun, S.; Luangsa-Ard, J. J.; Surup, F.; Helaly, S. E.; Noumeur,

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S. R.; Stadler, M.; Stradal, T. E. B. The effect of cytochalasans on the actin cytoskeleton of

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eukaryotic cells and preliminary structure-activity relationships. Biomolecules 2019, 9, 73.

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(10) Xiao, J.; Zhang, Q.; Gao, Y. Q.; Tang, J.-J.; Zhang, A.-L.; Gao, J.-M. Secondary metabolites

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from the endophytic Botryosphaeria dothidea of Melia azedarach and their antifungal,

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antibacterial, antioxidant, and cytotoxic activities. J. Agric. Food Chem. 2014, 62, 3584 – 3590.

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(11) Li, H.; Xiao, J.; Gao, Y. Q.; Tang, J. J.; Zhang, A. L.; Gao. J. M. Chaetoglobosins from

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Chaetomium globosum, an endophytic fungus in Ginkgo biloba, and their phytotoxic and

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cytotoxic activities. J. Agric. Food Chem. 2014, 62, 3734 – 3741.

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(12) Li, X. J.; Tang, H.Y.; Duan, J. L.; Gao, J. M.; Xue, Q. H. Bioactive alkaloids produced by

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Pseudomonas brassicacearum subsp neoaurantiaca, an endophytic bacterium from Salvia

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miltiorrhiza. Nat. Prod. Res. 2013, 27, 496 – 499.

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(13) Yuan, Y.; Tian, J. M.; Xiao, J.; Shao, Q.; Gao, J. M. Bioactive metabolites isolated from

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Penicillium sp YY-20, the endophytic fungus from Ginkgo biloba. Nat. Prod. Res. 2014, 28, 278

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–281.

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(14) Xiao, J.; Zhang, Q.; Gao, Y. Q.; Shi, X. W.; Gao, J. M. Antifungal and antibacterial

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metabolites from an endophytic Aspergillus sp. associated with Melia azedarach. Nat. Prod. Res.

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2014, 28, 1388 – 1392.

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(15) Li, H.; Wei, J.; Pan, S. Y.; Gao, J. M.; Tian, J. M. Antifungal, phytotoxic and toxic

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metabolites produced by Penicillium purpurogenum. Nat. Prod. Res. 2014, 28, 2358 – 2361.

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(16) Zhang, Q.; Xiao, J.; Sun, Q. Q.; Qin, J. C.; Pescitelli, G.; Gao, J. M. Characterization of

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cytochalasins from the endophytic Xylaria sp. and their biological functions. J. Agric. Food Chem. 19

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2014, 62, 10962 – 10969.

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(17) Zhang, Q.; Wang, S. Q.; Tang, H. Y. Li, X. J.; Zhang, L.; Xiao, J.; Gao, Y. Q.; Zhang, A. L.;

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Gao, J. M. Potential allelopathic indole diketopiperazines produced by the plant endophytic

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Aspergillus fumigatus using the one strain-many compounds method. J. Agric. Food Chem. 2013,

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61, 11447 – 11452.

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(18) Liu, X.; Tian, F.; Tian, Y.; Wu, Y.; Dong, F.; Xu, J.; Zheng, Y. Isolation and identification of

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potential allelochemicals from aerial parts of Avena fatua L. and their allelopathic effect on wheat.

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(19) Di Bari, L.; Pescitelli, G.; Pratelli, C.; Pini, D.; Salvadori, P. Determination of absolute

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configuration of acyclic 1,2-diols with Mo2(OAc)4. 1. Snatzke's method revisited. J. Org. Chem.

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(20) Górecki, M.; Jabłońska, E.; Kruszewska, A.; Suszczyńska, A.; Urbańczyk-Lipkowska, Z.;

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Gerards, M.; Morzycki, J. W.; Szczepek, W. J.; Frelek, J. Practical method for the absolute

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configuration assignment of tert/tert 1,2-diols using their complexes with Mo2(OAc)4. J. Org.

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Chem. 2007, 72, 2906 – 2916.

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(21) Zhang, H. W.; Zhang, J.; Hu, S.; Zhang, Z. J.; Zhu, C. J.; Ng, S. W.; Tan, R. X. Ardeemins

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and cytochalasins from Aspergillus terreus residing in Artemisia annua. Planta Med. 2010, 76,

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1616 – 1621.

433

(22) Liu, R.; Gu, Q.; Zhu, W.; Cui, C.; Fan, G.; Fang, Y.; Zhu, T.; Liu, H.

434

10-Phenyl-[12]-cytochalasins Z7, Z8, and Z9 from the marine-derived fungus Spicaria elegans. J.

435

Nat. Prod. 2006, 69, 871 – 875.

436

(23) Kimura, Y.; Nakajima, H.; Hamasaki, T. Structure of rosellichalasin, a new metabolite 20

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produced by Rosellinia necatrix. Agric. Biol. Chem. 1989, 53, 1699 – 1701.

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(24) Tori, K.; Nakagawa, T.; Komeno, T. Nuclear Magnetic Resonance studies on steroids. 111.

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steroidal epoxides and episulfides. J. Org. Chem. 1964, 29, 1136 – 1141.

440

(25) Espada, A.; Rivera-Sagredo, A.; de la Fuente, J. M.; Hueso-Rodriguez, J. A.; Elson, S. W.

441

New cytochalasins from the fungus Xylaria hypoxylon. Tetrahedron, 1997, 53, 6485 – 6492.

442

(26) Pescitelli, G.; Bruhn, T., Good computational practice in the assignment of absolute

443

configurations by TDDFT calculations of ECD spectra. Chirality 2016, 28, 466 – 474.

444

(27) Superchi, S.; Scafato, P.; Gorecki, M.; Pescitelli, G. Absolute configuration determination by

445

quantum mechanical calculation of chiroptical spectra: basics and applications to fungal

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metabolites. Curr. Med. Chem. 2018, 25, 287 – 320.

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(28) Bruhn, T.; Schaumlöffel, A.; Hemberger, Y.; Bringmann, G. SpecDis: Quantifying the

448

comparison of calculated and experimental electronic circular dichroism spectra. Chirality 2013,

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25, 243 – 249.

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(29) Wang, H.; Li, M. Y.; Satyanandamurty, T.; Wu, J. New diterpenes from a Godavari

451

mangrove, Ceriops decandra. Planta Med. 2013, 79, 666 – 672.

452

(30) Steyn, P. S.; van Heerden, F. R.; Rabie, C. J. Cytochalasins E and K, toxic metabolites from

453

Aspergillus clavatus. J. Chem. Soc. Perkin Trans. 1 1982, 541 – 544.

454

(31) Büchi, G.; Kitaura, Y.; Yuan, SS.; Wright, H. E.; Clardy, J.; Demain, A. L.; Ginsukon, T.;

455

Hunt, N.; Wogan, G. N. Structure of cytochalasin E, a toxic metabolite of Aspergillus clavatus. J.

456

Am. Chem. Soc. 1973, 95, 5423 – 5425.

457 458 21

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459 460 461 462 463 464

Figure captions

465 466

Figure 1. Structures of 1 – 8.

467

Figure 2. X-ray crystallography of 1 (upper) and 2 (bottom).

468

Figure 3. Selected 1H−1H COSY, HMBC (up) and NOESY correlations of 3 (down).

469

Figure 4. Experimental CD spectrum of (+)-3 in methanol (2.1 mM, 0.5 cm cell)

470

compared with the spectrum calculated on (3S,4S,5S,6R,7S,8S,9S,13R,14R,16S)-3 at

471

the TD-CAM-B3LYP/def2-TZVP level as Boltzmann-weighted average over 3

472

conformers optimized at the ɷB97X-D/6-311+G(d,p) level, including PCM solvent

473

model for MeOH. Plotting parameters: Gaussian band-width 0.35 eV; wavelength

474

shift +3 nm; scaled by a factor 2.

475

Figure 5. ICD spectrum of 4 in DMSO containing Mo2(OAc)4 with the inherent CD

476

subtracted (up), and Newman projection of Mo-complexes of 4 (down).

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478 479 12

O

11 1'

3'

H

10

OH

7

O

22

5 13

9 3

HN

1

5'

15

H

O 17

O 21 O O

O

OH

HN

19 23

1

H

OH

HN

O O O

O

H H

H

O

O O O 3

2 16 13

11 20

1

HO

9

5 18

7

H

O

HN

19

4

O

O

O

O

O

HN

OH

O O

O O

8

481 482 483

O O O O 6

H

7

480

HN

O O O

OH O O

H

5

H HN

OH

OH

17

14

H

10

3

HO

OH 15

Figure 1

23

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O OH

Journal of Agricultural and Food Chemistry

485

486 487

1

488 489 490

2 Figure 2

491 492 493

24

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Journal of Agricultural and Food Chemistry

O O

H

H

O O

HN

O

COSY

O HMBC

NOE

494 495 496

Figure 3

25

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Journal of Agricultural and Food Chemistry

498 499

Figure 4

26

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Page 27 of 31

Journal of Agricultural and Food Chemistry

501

502 503 504

Figure 5

505 506 507 508 509 510 511 512 513 514 515 27

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Page 28 of 31

516 517

Table 1. NMR Spectroscopic Data of 1 − 3 in CDCl3 1 δC 1

2

δH (mult, J in Hz)

δC

170.4

172.1 5.93, br s

2

δH (mult, J in Hz)

3 δC

δH (mult, J in Hz)

170.5 6.04 br s

5.79, br s

3

56.6

3.58, m

56.9

3.74 ddd (7.6, 7.2, 1.8)

54.7

3.68, m

4

48.0

3.19 d (1.8)

47.5

3.19 d (1.8)

50.6

2.55, t (4.1)

5

62.8

62.2

36.2

2.00, qd (7.3, 4.1)

6

64.2

64.4

56.1

7

69.2

3.59, d (10.4)

70.5

3.68 d (10.4)

58.1

2.88, d (5.2)

8

46.8

3.40 t (10.4)

46.2

3.39 t (10.4)

48.8

1.61, dd (8.8, 5.2)

9

83.2

10

43.0

84.0 3.02, dd (13.3, 8.8)

43.3

2.92, dd (13.3, 5.6)

83.7 2.96, dd (13.2, 7.2)

43.5

2.92, dd (13.2, 7.6)

3.08, dd (13.4, 9.5) 2.90, dd (13.4, 4.4)

11

20.2

1.33 s

20.7

1.25, s

13.6

1.13, d (7.3)

12

14.1

1.42, s

14.5

1.38, s

20.1

1.31, s

13

124.8

5.77 ddd (15.1, 10.4, 1.4)

123.6

6.11, dd (15.1, 10.4)

58.3

3.48, dd (8.8, 1.7)

137.9

5.62, ddd (15.1, 11.0, 3.8)

140.7

5.27, ddd (15.1, 10.1,

60.9

2.87, m

38.4

2.08, br d (15.2)

14 15

4.2) 39.8

2.26 ddd (14.0, 3.8, 2.0)

42.8

2.10, m

2.08 dt (14.0, 11.0) 16

39.5

17

1.42, m 32.0

1.62, m

36.1

205.1

78.6

3.82, t (3.7)

204.6

18

142.8

42.7

2.76, m

142.1

19

132.0

6.40, t (8.0)

156.5

7.00, dd (16.0, 4.8)

130.9

6.75, t (8.2)

20

36.6

3.30, dd (12.4, 8.0)

121.3

5.71, dd (16.0, 1.7)

35.4

3.29, dd (14.4, 8.2)

3.30, m

3.13, dd (12.4, 8.0)

3.51, m

3.22, dd (14.4, 8.2)

21

168.7

166.5

168.8

22

17.6

1.17, d (6.8)

18.4

0.98, d (7.4)

18.7

1.17, d (6.8)

23

12.6

1.84, s

8.7

1.05, d (6.6)

12.2

1.89, s

1’

136.9

2’

129.2

7.18 d (7.1)

129.2

7.17 d (7.1)

129.2

7.21, d (7.3)

3’

129.1

7.35 t (7.1)

129.0

7.34 t (7.1)

129.1

7.35, t (7.3)

4’

127.3

7.28 t (7.1)

127.1

7.27 t (7.1)

127.3

7.29, t (7.3)

5’

129.1

7.35 t (7.1)

129.0

7.34 t (7.1)

129.1

7.35, t (7.3)

6’

129.2

7.18 d (7.1)

129.2

7.17 d (7.1)

129.2

7.21, d (7.3)

137.0

137.3

518 519 28

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520 521 522

Table 2. NMR Spectroscopic Data of 4 in MeOH-d4 4

1

δC

δH, multi (J in Hz)

45.6

1.48, t (12.1) 2.57, dd (12.1, 4.6)

2

69.2

3.75, ddd (12.1, 9.7, 4.6)

3

83.4

2.95, d (9.7)

4

40.4

5

50.1

1.83, dd (13.9, 4.0)

6

36.9

2.59, dd (18.1, 4.0) 2.68, dd (18.1, 13.9)

7

201.2

8

131.1

9

154.9

10

39.9

11

125.0

7.33, d (8.3)

12

132.4

7.64, dd (8.3, 2.2)

13

149.4

14

124.1

15

72.6

16

31.7

1.42, s

17

31.7

1.42, s

18

28.5

0.98, s

19

16.7

0.88, s

20

24.6

1.20, s

7.98, d (2.2)

523

29

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525 526

Table 3. Allelopathic effects on wheat (Triticum aestivum) of Compounds 1 − 8 a germination rate compds

6.25 μM

root elongation (RI)

100 μM

6.25 μM

100 μM

6.25 μM

1

0.83 ± 0.06

0.92 ± 0.06

-0.47 ± 0.05

-0.30 ± 0.05

-0.52 ± 0.03

-0.02 ± 0.02

2

0.67 ± 0.05

0.83 ± 0.06

-0.54 ± 0.05

-0.07 ± 0.01

-0.51 ± 0.04

-0.04 ± 0.02

3

0.92 ± 0.06

0.92 ± 0.05

-0.69 ± 0.04

0.00 ± 0.00

-0.87 ± 0.07

-0.09 ± 0.05

4

0.83 ± 0.05

0.92 ± 0.05

-0.66 ± 0.04

-0.38 ± 0.10

-0.62 ± 0.02

-0.13 ± 0.04

5

0.67 ± 0.06

0.83 ± 0.05

-0.58 ± 0.05

-0.16 ± 0.06

-0.74 ± 0.02

-0.36 ± 0.04

6

0.92 ± 0.00

0.67 ± 0.05

-0.45 ± 0.02

-0.14 ± 0.00

-0.41 ± 0.03

-0.27 ± 0.02

7

0.50 ± 0.02

0.92 ± 0.05

-0.72 ± 0.06

-0.44 ± 0.00

-0.78 ± 0.02

-0.07 ± 0.02

8

0.83 ± 0.06

0.83 ± 0.05

-0.65 ± 0.05

-0.07 ± 0.01

-0.80 ± 0.02

-0.29 ± 0.02

0.83 ± 0.06

0.92 ± 0.05

-0.53 ± 0.06

0.14 ± 0.04

-0.57 ± 0.02

-0.07 ± 0.01

0.92 ± 0.05

0.83 ± 0.00

Glyphosate b Ck

527

100 μM

shoot elongation (RI)

a

c

Mean ± SD. b Positive control. c Blank control.

528 529 530 531

Table 4. Inhibitory effects on turnip (Raphanus sativus) and wheat (Triticum aestivum) of

532

Compounds 1 – 8 (IC50 in μM) a

533

shoot elongation compds

534 535 536 537

turnip

wheat

turnip

>100

NA

wheat

1

NA

2

NA

98.70 ± 0.19

NA

3

NA

18.92 ± 0.80

NA

40.28 ± 0.19

4

NA

23.58 ± 0.43

NA

52.06 ± 0.16

5

>100

84.05 ± 0.27

>100

17.35 ± 0.05

6

NA

7

99.42 ± 0.16

8 Glyphosate a

b

root elongation

>100 c

Mean ± SD.

99.88 ± 5.31 b

>100

79.27 ± 0.26 >100

NA

>100

24.02 ± 0.51

36.75 ± 0.09

22.58 ± 0.58

46.58 ± 0.19

1.57 ± 0.21

19.74 ± 0.09

42.31 ± 0.66

83.09 ± 0.09

38.11 ± 0.29

Not activity (Inhibition rates < 30% at 100 μM).

control.

30

ACS Paragon Plus Environment

c

Positive

Page 31 of 31

Journal of Agricultural and Food Chemistry

539

TOC 540 541 OH

12

O

11 1'

10

OH

7 9

3

HN O

1

13

15

O 21 19 O O 1

542

O 23

2

Xylaria sp. XC-16

O 4

OH O O O

H

HO

17

OH

H HN

HO

22

5

H

eight allelochemicals

543 544 545

31

ACS Paragon Plus Environment