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Design, Synthesis and Structure-activity Relationship of New Pyrimidinamine Derivatives Containing an Aryloxy Pyridine Moiety Aiying Guan, Changling Liu, Wei Chen, FAN YANG, Yong Xie, Jinbo Zhang, Zhinian Li, and Ming-an Wang J. Agric. Food Chem., Just Accepted Manuscript • DOI: 10.1021/acs.jafc.6b05580 • Publication Date (Web): 25 Jan 2017 Downloaded from http://pubs.acs.org on January 30, 2017
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Journal of Agricultural and Food Chemistry is published by the American Chemical Society. 1155 Sixteenth Street N.W., Washington, DC 20036 Published by American Chemical Society. Copyright © American Chemical Society. However, no copyright claim is made to original U.S. Government works, or works produced by employees of any Commonwealth realm Crown government in the course of their duties.
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Journal of Agricultural and Food Chemistry
1
Design, Synthesis and Structure-activity Relationship
2
of New Pyrimidinamine Derivatives Containing an
3
Aryloxy Pyridine Moiety
4 5
Aiying Guan†,‡, Changling Liu*,‡, Wei Chen‡, Fan Yang‡, Yong Xie‡, Jinbo
6
Zhang‡, Zhinian Li‡, Mingan Wang*,†
7 8 9 10
†
Department of Applied Chemistry, China Agricultural University, Beijing
100193, People’s Republic of China ‡
State Key Laboratory of the Discovery and Development of Novel Pesticide,
11
Shenyang Sinochem Agrochemicals R&D Co. Ltd., Shenyang 110021,
12
People’s Republic of China
13 14 15
*Corresponding author (Tel: +86-(0)10-62734093; E-mail:
16
[email protected])
17
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ABSTRACT
19
The pyrimidinamine diflumetorim is an ideal template for the discovery of
20
agrochemical lead compounds due to its unique mode of action, novel
21
chemical structure and lack of reported resistance. In order to develop a new
22
pyrimidinamine fungicide effective against cucumber downy mildew (CDM), a
23
series of new pyrimidinamine derivatives containing an aryloxy pyridine moiety
24
were designed and synthesized by employing the recently reported
25
intermediate derivatization method (IDM). The structures of all compounds
26
were identified by 1H NMR, elemental analyses, HRMS and X-ray diffraction.
27
Bioassays demonstrated that some of the title compounds exhibited excellent
28
fungicidal activities against CDM. Compound 9 gave the best activity (EC50 =
29
0.19 mg/L), which is significantly better than the commercial fungicides
30
diflumetorim, flumorph and cyazofamid. The relationship between structure
31
and fungicidal activity of the synthesized pyrimidinamines was explored. The
32
study showed that compound 9 is a promising fungicide candidate for further
33
development.
34 35
KEYWORDS: intermediate derivatization method (IDM), fungicidal activities,
36
cucumber downy mildew, structure-activity relationship
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INTRODUCTION
38
Agrochemicals play an important role in modern agriculture by increasing both
39
crop quality and yield while improving living standards. Fungicides are a major
40
section of crop protection products, which are applied widely to major crops
41
such as rice, corn, fruits and vegetables. In 2014 the global market for
42
fungicides was valued at $16,365 million, equivalent to 25.9% of the global
43
agrochemical market; this represents an increase of 4.4% in comparison with
44
2013.1 However, with the widespread application of fungicides, the
45
development of resistance is inevitable. Based on the report from the
46
Fungicide Resistance Action Committee (FRAC), fungicides with known
47
modes of action are classified according to target sites into more than 50
48
groups. Among these, it was reported that over 40 target sites have already
49
developed medium to high resistance risk to many familiar classes of
50
fungicides which involved the vast majority of fungicide structures.2 The
51
discovery of fungicide candidates with innovative structures is urgently needed
52
to address this problem. Pyrimidinamines, which act as mitochondrial complex
53
I electron transport inhibitors (MET I), are one of the few types of fungicides
54
without reported resistance.2 Diflumetorim is the representative pyrimidinamine
55
fungicide targeting MET I, its structure is significantly different from
56
commercially available fungicides, and also different from MET I inhibitors that
57
are insecticides. More importantly, it has no cross resistance with the existing
58
conventional fungicides, and is safe to non-target organisms.3a These
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properties suggest that pyrimidinamines may be promising templates for the
60
discovery of new fungicide candidates.
61
The diaryl ether moiety is commonly found in many molecules of agricultural
62
importance such as pyrethroid insecticides, (aryloxy)phenoxypropionate
63
herbicides and triazole fungicides such as difenoconazole.3 Additionally, the
64
pyridine moiety is found in several fungicides, insecticides/acaricides and
65
herbicides.4 The introduction of a pyridine ring in place of a phenyl ring usually
66
leads to pesticides that have lower toxicity and higher systemicity or
67
selectivity.5 2-Chloro-5-(chloromethyl)pyridine and substituted nicotinic acids
68
bearing reactive groups such as Cl, COOH and chloromethyl, are promising
69
intermediates of low cost and toxicity, which can be readily modified to give
70
structural diversity.
71
In this study, we sought to develop new pyrimidinamine derivatives with
72
improved fungicidal activity by employing intermediate derivatization method
73
(IDM), a recently reported highly efficient approach to discover agrochemical
74
candidates.6-20 2-Chloro-5-(chloromethyl)pyridine or 6-chloronicotinic acid
75
derivatives were used as starting materials to obtain key intermediates which
76
produced a series of pyrimidinamine derivatives containing an aryloxy pyridine
77
moiety
78
structure−activity relationships of these compounds are discussed below.
79
MATERIALS AND METHODS
80
All chemicals such as starting materials and reagents were commercially
(Figure
1).
The
detailed
synthesis,
bioassay
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results,
and
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available (Sinopharm Chemical reagent Co. Ltd., Shanghai, China) and used
82
without further purification except as indicated. Melting points were determined
83
on a Büchi M-569 melting point apparatus (Büchi Labortechnik AG, Flawil,
84
Switzerland) and are uncorrected. 1H NMR spectra were recorded with a
85
Mercury 300 MHz spectrometer (Varian, Palo Alto, CA) with deuterochloroform
86
as the solvent and tetramethylsilane (TMS) as the internal standard. Elemental
87
analyses were determined on a Yanaco MT-3CHN elemental analyzer
88
(Yanaco, Kyoto, Japan). Mass spectra were acquired with an Agilent
89
Accurate-Mass-Q-TOF MS 6520 system (Agilent Technologies, Milford, MA)
90
equipped with an electrospray ionisation (ESI) source. X-ray structure
91
determination was recorded with XtaLAB mini (Rigaku, The Woodlands, TX).
92
All plant and bacteria materials were obtained from the Agrochemical
93
Discovery Department in Shenyang Sinochem Agrochemicals R&D Co. Ltd
94
(Shenyang, China).
95
The general synthetic methods for compounds 1-37 are shown in Figures 2, 3
96
and 5-9 and their structures are listed in Tables 1-4. The silica gel
97
chromatography was performed with a column of 254 mm x 26 mm i.d.
98
(Synthware glass Co. Ltd., Beijing, China) using 100-140 mesh silica gel
99
(Sinopharm Chemical reagent Co. Ltd., Shanghai, China).
100
Synthesis of
101
5-chloro-N-((6-(4-chlorophenoxy)pyridin-3-yl)methyl)-6-ethylpyrimidin-4-
102
amine, 26. (General procedure for compounds 1, 2, 25 and 26) (Figure 2)
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Synthesis of 6-(4-chlorophenoxy)nicotinonitrile (M-1, R = Cl)
104
Sodium hydride (1.03 g, 70%, 30 mmol) was added into a solution of
105
4-chlorophenol (2.57 g, 20 mmol) in 30 mL of DMF, the reaction mixture was
106
stirred
107
6-chloronicotinonitrile (2.76 g, 20 mmol), and then the reaction mixture was
108
heated to 100 oC for another 10 h. After reaction completion, the mixture was
109
poured into water and extracted with ethyl acetate. The extract was dried over
110
anhydrous magnesium sulfate and concentrated under reduced pressure to
111
give intermediate M-1 as a pale brown solid: 4.27 g (93%).
112
Synthesis of (6-(4-chlorophenoxy)pyridin-3-yl)methanamine (M-2, R = Cl)
113
To a solution of M-1 (2.31 g, 10 mmol), Raney nickel (1.0 g) and 10 mL of 25%
114
aqueous ammonia in 50 mL ethanol, hydrogen was introduced, then the
115
reaction mixture was stirred at room temperature for 3-15 h and monitored by
116
TLC until the reaction was complete, Raney nickel was filtered, and the
117
solution was concentrated under reduced pressure to give M-2 as a jade-green
118
sticky liquid: 2.55 g (95%).
119
To a solution of M-2 (0.24 g, 1.0 mmol) and potassium carbonate (0.21 g, 1.5
120
mmol) in 10 mL DMF was added 4,5-dichloro-6-ethylpyrimidine (0.16 g, 1.0
121
mmol), prepared according to literature methods.21,22 Then the reaction
122
mixture was heated to 80 oC for 2 h, and monitored by TLC until the reaction
123
was complete. The reaction mixture was poured into water and extracted with
124
ethyl acetate. The organic phase was washed successively with water and
at
room
temperature
for
4
h,
followed
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by
addition
of
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saturated brine, dried, filtered and evaporated under reduced pressure. The
126
residue was purified via silica gel chromatography with ethyl acetate/60-90 °C
127
petroleum ether (1:3, v/v) as eluent to obtain 0.28 g compound 26 as a white
128
solid: 0.28 g (75%), m.p. 86 oC. 1H NMR (300MHz, CDCl3) δ 1.31 (t, J=7.5Hz,
129
3H, CH2CH3), 2.80 (q, 2H, CH2CH3), 4.68 (d, J=6.0 Hz, 2H, CH2), 5.71 (bs, 1H,
130
NH), 6.91 (d, J=8.4Hz, 1H, pyridine 3-H), 7.07 (d, J=8.7Hz, 2H, Ph-2,6-2H),
131
7.34 (d, J=8.7Hz, 2H, Ph-3,5-2H), 7.72 (dd, J=8.4,2.7Hz, 1H, pyridine 4-H),
132
8.16 (s, 1H, pyridine 6-H), 8.44 (s, 1H, pyrimidine 2-H). Anal. Calcd (%) for
133
C18H16Cl2N4O: C, 57.61; H, 4.30; N, 14.93. Found: C, 57.53; H, 4.33; N, 14.89.
134
HRMS m/z 374.0698 [M + H]+ (calcd [M + H]+ 374.0701).
135
Synthesis of
136
5-chloro-N-(2-(6-(4-chlorophenoxy)pyridin-3-yl)ethyl)-6-methylpyrimidin-
137
4-amine, 9. (General procedure for compounds 3-24) (Figure 3)
138
Synthesis of methyl 6-(4-chlorophenoxy)nicotinate (M-3, R = Cl)
139
To a solution of 4-chlorophenol (25.6 g, 0.2 mol) in 350 mL DMF was added
140
70% sodium hydride (103 g, 3.0 mol) in portions. The reaction mixture was
141
stirred for 4 h at room temperature, and then methyl 6-chloronicotinate (34.2 g,
142
0.2 mol) was added in portions. Next the reaction temperature was raised to
143
100 oC and maintained for 10 h, and monitored by TLC until the reaction was
144
complete. The resulting solution was poured into water and extracted with
145
ethyl acetate. The organic phase was successively washed with water and
146
saturated brine, dried, filtered and evaporated under reduced pressure, the
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cooled residue was filtered and washed with petroleum ether, to obtain
148
intermediate M-3 as a brown solid: 42.0 g, m.p. 65 oC.
149
Synthesis of (6-(4-chlorophenoxy)pyridin-3-yl)methanol (M-4, R = Cl)
150
To a solution of M-3 (52.6 g, 0.2 mol) in 500 mL anhydrous ether was added
151
dropwise 65% Red-Al (74.5 g, 0.24 mol) in toluene at 0 oC. The reaction
152
mixture was stirred for 4 h at room temperature, cooled to 0 oC, and 10%
153
sodium hydroxide solution prepared fresh was added dropwise until the
154
reaction solution was clarified. Then the reaction temperature was raised to 35
155
o
C to react for 2 h, and monitored by TLC until the reaction was complete. The
156
solution was poured into water and extracted with ethyl acetate. The organic
157
phase was successively washed with water and saturated brine, dried, filtered
158
and evaporated under reduced pressure. The residue was purified via silica
159
gel chromatography with ethyl acetate/60-90 °C petroleum ether (1:3, v/v) as
160
eluent to obtain M-4 as a white solid: 42.2 g, m.p. 101 oC.
161
Synthesis of 5-(chloromethyl)-2-(4-chlorophenoxy)pyridine (M-5, R = Cl)
162
To a solution of M-4 (23.5 g, 0.1 mol) in 350 mL dichloromethane was
163
dropwise added thionyl chloride (17.9 g, 0.15 mol) at 0 oC. The reaction
164
mixture was stirred for 4 h at room temperature, and monitored by TLC until
165
the reaction was complete, excess thionyl chloride was evaporated and the
166
residue was poured into water and extracted with ethyl acetate. The organic
167
phase was successively washed with water, saturated sodium bicarbonate
168
solution and saturated brine, dried, filtered and evaporated under reduced
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pressure, to obtain M-5 as a white solid: 22.8 g, m.p. 79 oC.
170
Synthesis of 2-(6-(4-chlorophenoxy)pyridin-3-yl)acetonitrile (M-6, R = Cl)
171
To a solution of sodium cyanide (2.69 g, 55 mmol) dissolved in 300 mL
172
dimethyl sulfoxide was added M-5 (13.9 g, 50 mmol) and 18-Crown-6 (0.69 g,
173
2.63 mmol) at 40 °C. The reaction mixture was raised to 80 oC to react for 2 h,
174
and monitored by TLC until the reaction was complete. The residue was
175
poured into water, extracted with toluene, the organic phase was successively
176
washed with water and saturated brine, dried, filtered and evaporated under
177
reduced pressure. The residue was purified via silica gel chromatography with
178
ethyl acetate/60-90 °C petroleum ether (1:3, v/v) as eluent to obtain M-6 as a
179
white solid: 11.2 g, m.p. 101 oC.
180
Synthesis of 2-(6-(4-chlorophenoxy)pyridin-3-yl)ethanamine (M-7, R = Cl)
181
To a solution of M-6 (2.44 g, 10 mmol), Raney nickel (1.0 g) and 10 mL of 25%
182
aqueous ammonia in 50 mL ethanol was introduced hydrogen gas, then the
183
reaction mixture was stirred at room temperature for 3-15 h and monitored by
184
TLC until the reaction was complete. Raney nickel was filtered, and the
185
solution was concentrated under reduced pressure to give M-7 as a jade-green
186
sticky liquid: 2.30 g (95%).
187
To a solution of M-7 (0.25 g, 1.0 mmol) and potassium carbonate (0.21 g, 1.5
188
mmol) in 10 mL DMF was added 4,5-dichloro-6-methylpyrimidine (0.16 g, 1.0
189
mmol). Then the reaction temperature was raised to 80 oC and maintained for
190
2 h, and monitored by TLC until the reaction was complete. The mixture was
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poured into water and extracted with ethyl acetate. The organic phase was
192
successively washed with water and saturated brine, then dried, filtered and
193
evaporated under reduced pressure. The residue was purified via silica gel
194
chromatography with ethyl acetate/60-90 °C petroleum ether (1:4, v/v) as
195
eluent to obtain compound 9 as a colorless oil: 0.28 g (74%). 1H NMR
196
(300MHz, CDCl3) δ 2.46 (s, 3H, CH3), 2.91 (t, J=6.9Hz, 2H, CH2CH2NH), 3.75
197
(q, 2H, CH2CH2NH), 5.43 (bs, 1H, NH), 6.89(d, J=8.4Hz, 1H, pyridine 3-H),
198
7.07 (d, J=6.6Hz, 2H, Ph-2,6-2H), 7.35 (d, J=6.6Hz, 2H, Ph-3,5-2H), 7.58 (dd,
199
J=8.4,2.7Hz, 1H, pyridine 4-H), 8.03 (s, 1H, pyridine 6-H), 8.39 (s, 1H,
200
pyrimidine 2-H). Anal. Calcd (%) for C18H16Cl2N4O: C, 57.61; H, 4.30; N, 14.93.
201
Found: C, 57.59; H, 4.26; N, 14.99. HRMS m/z 374.0694 [M + H]+ (calcd [M +
202
H]+ 374.0701).
203
The crystal structure of target compound 9 was also determined by X-ray
204
diffraction analyses. Its crystal structure is shown in Figure 4.
205
Synthesis of
206
5-chloro-4-((6-(4-chlorophenoxy)pyridin-3-yl)methoxy)-6-methylpyrimidin
207
e, 27. (General procedure for compounds 27 and 28) (Figure 5)
208
To a solution of (6-(4-chlorophenoxy)pyridin-3-yl)methanol (M-4) (0.23 g, 1.0
209
mmol) and potassium carbonate (0.21 g, 1.5 mmol) in 10 mL DMF was added
210
4,5-dichloro-6-methylpyrimidine (0.16 g, 1.0 mmol). Then the reaction
211
temperature was raised to 80 °C and maintained for 2 h, and monitored by TLC
212
until the reaction was complete. The mixture was poured into water and
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extracted with ethyl acetate. The organic phase was successively washed with
214
water and saturated brine, dried, filtered and evaporated under reduced
215
pressure. The residue was purified via silica gel chromatography with ethyl
216
acetate/60-90 °C petroleum ether (1:4, v/v) as eluent to obtain compound 27
217
as a colorless oil: 0.28 g (77%). 1H NMR (300MHz, CDCl3) δ 2.43 (s, 3H, CH3)
218
5.07 (s, 2H, CH2), 6.92 (d, J=8.4Hz, 1H, pyridine 3-H), 7.06 (d, J=8.4Hz, 2H,
219
Ph-2,6-2H), 7.35 (d, J=8.4Hz, 2H, Ph-3,5-2H), 7.81 (dd, J=8.4,2.1Hz, 1H,
220
pyridine 4-H), 8.06 (s, 1H, pyridine 6-H), 8.17 (s, 1H, pyrimidine 2-H). Anal.
221
Calcd (%) for C17H13Cl2N3O2: C, 56.37; H, 3.62; N, 11.60. Found: C, 56.42; H,
222
3.59; N, 11.68. HRMS m/z 361.0391 [M + H]+ (calcd [M + H]+ 361.0385).
223
Synthesis of
224
N-(1-(6-(4-(tert-butyl)phenoxy)pyridin-3-yl)ethyl)-5-chloro-6-ethylpyrimidi
225
n-4-amine, 30. (General procedure for compounds 29 and 30) (Figure 6)
226
Compound 30 was obtained according to a literature method as a colorless oil
227
in 49% yield.23 1H NMR (300MHz, CDCl3) δ 1.26 (t, J=7.5Hz, 3H, CH2CH3),
228
1.33 (s, 9H, t-Bu), 1.61 (d, J=6.9Hz, 3H, CHCH3), 2.78 (q, 2H, CH2CH3), 5.36
229
(q, 1H, CHCH3), 5.52 (bs, 1H, NH), 6.87 (d, J=8.4Hz, 1H, pyridine 3-H), 7.05 (d,
230
J=6.9Hz, 2H, Ph-2,6-2H), 7.39 (d, J=6.9Hz, 2H, Ph-3,5-2H), 7.67 (dd,
231
J=8.4,2.7Hz, 1H, pyridine 4-H), 8.22 (s, 1H, pyridine 6-H), 8.39 (s, 1H,
232
pyrimidine 2-H). Anal. Calcd (%) for C19H19ClN4O: C, 64.31; H, 5.40; N, 15.79.
233
Found: C, 64.22; H, 5.44; N, 15.80. HRMS m/z 410.1878 [M + H]+ (calcd [M +
234
H]+ 410.1873).
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235
Synthesis
236
1-(5-chloro-6-methylpyrimidin-4-yl)-3-(2-(6-(4-chlorophenoxy)pyridin-3-yl)
237
ethyl)urea, 31. (Figure 7)
238
Synthesis of 2-(4-chlorophenoxy)-5-(2-isocyanatoethyl)pyridine (M-10)
239
To a 0 oC solution of triphosgene (3.5 mL) in dichloromethane (25 mL) and
240
saturated NaHCO3 (25 mL) was added
241
2-(6-(4-chlorophenoxy)-pyridin-3-yl)ethanamine (M-7) (0.74 g, 3.0 mmol). The
242
reaction mixture was stirred at room temperature for 2.5 h and then the layers
243
are separated. The organic layer was dried over anhydrous MgSO4 and
244
concentrated under reduced pressure to half volume. Dichloromethane (20 mL)
245
was added to obtain M-10 as a solution in dichloromethane.
246
To a 0 oC solution of 5-chloro-6-methylpyrimidin-4-amine (0.28 g, 2.0 mmol) in
247
dichloromethane (5 mL) was added isocyanate M-10 prepared above and then
248
N,N-diisopropylethylamine (DIPEA) (3 mL).24 The reaction mixture was stirred
249
at room temperature for 1 h and then diluted with ethyl acetate and washed
250
with saturated NH4Cl and brine. The organic layer was dried over anhydrous
251
MgSO4, filtered and concentrated under reduced pressure. The residue was
252
purified via silica gel chromatography with ethyl acetate/60-90 °C petroleum
253
ether (1:2, v/v) as eluent to obtain compound 31 as a white solid: 0.33 g (40%).
254
1
of
H NMR (300MHz, CDCl3) δ 2.48 (s, 3H, CH3), 2.73 (t, J=6.9Hz, 2H,
255
NHCH2CH2), 3.46-3.51 (m, 2H, NHCH2CH2), 4.92(bs, 1H, NHCH2CH2), 6.85 (d,
256
J=8.4Hz, 1H, pyridine 3-H), 7.03 (d, J=8.1Hz, 2H, Ph-2,6-2H), 7.33 (d, J=8.1Hz,
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2H, Ph-3,5-2H), 7.54 (d, J=7.2Hz, 1H, pyridine 4-H), 7.96 (s, 1H, pyridine 6-H),
258
8.32 (s, 1H, pyrimidine 2-H). Anal. Calcd (%) for C19H19ClN4O: C, 64.37; H,
259
5.30; N, 15.79. Found: C, 64.31; H, 5.40; N, 15.79. HRMS m/z 417.0755 [M +
260
H]+ (calcd [M + H]+ 417.0759).
261
Synthesis
262
5-Chloro-N-(2-(2-(4-chlorophenoxy)pyridin-3-yl)ethyl)-6-ethylpyrimidin-4-
263
amine, 35. (General procedure for compounds 32-35) (Figure 8)
264
The procedures for preparing intermediates (M-11 to M-15) and desired
265
compound 35 were analogous to those for the corresponding intermediates
266
(M-3 to M-7) and compound 9, only replacing the starting materials, methyl
267
6-chloronicotinate
268
2-chloronicotinate (1.71 g, 10 mmol) and 4,5-dichloro-6-ethylpyrimidine (1.76 g,
269
10 mmol) respectively.
270
5-Chloro-N-(2-(2-(4-chlorophenoxy)pyridin-4-yl)ethyl)-6-ethylpyrimidin-4-
271
amine, 37. (General procedure for compounds 36 and 37) (Figure 9)
272
The procedures for preparing intermediates (M-16 to M-20) and desired
273
compound 37 were analogous to those for the corresponding intermediates
274
(M-3 to M-7) and compound 9, only replacing the starting materials, methyl
275
6-chloronicotinate
276
2-chloroisonicotinate
277
4,5-dichloro-6-ethylpyrimidine(1.76 g, 10 mmol) respectively.
278
Fungicidal assay
of
and
and
4,5-dichloro-6-methylpyrimidine,
4,5-dichloro-6-methylpyrimidine, (1.86
g,
10
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with
with
mmol)
methyl
ethyl and
Journal of Agricultural and Food Chemistry
279
Each of the test compounds (4 mg) was first dissolved in 5 mL
280
acetone/methanol (1:1, v/v), then 5 mL of water containing 0.1% Tween 80
281
was added to generate a 10 mL stock solution of concentration 400 mg/L.
282
Serial test solutions were prepared by diluting the above solution (testing
283
range 3.13-400 mg/L).
284
Evaluations of fungicidal activity of the synthesized compounds against
285
cucumber downy mildew (CDM) was performed as follows: cucumber seeds
286
(Cucumis sativus L.) were grown to the one-leaf and one-heart stage, then the
287
test solution was sprayed on the host plant with a home-made sprayer. After
288
24 h, the leaf of host plant was inoculated with Sporangium suspension of the
289
fungus Pseudoperonospora cubensis cultured by Shenyang Sinochem
290
Agrochemicals R&D Co. Ltd. (Shenyang, China) at a concentration of 5x105
291
spores/mL using PS289 Procon Boy WA double action 0.3 mm airbrush (GSI,
292
Tokyo, Japan). The cucumber plants were stored in a humidity chamber (24±1
293
o
C, RH>95%, dark) and then transferred into a greenhouse (18-30 oC,
294
RH>50-60%) 24 h after infection. Three replicates were carried out. The
295
activity of each compound was estimated by visual inspection after 7 d and
296
screening results were reported in the range 0% (no control) to 100%
297
(complete control). The inhibitory activity (%) was estimated as: [(viability of
298
the blank control-viability of the treatment) / viability of the blank control] x 100.
299
The ED50 values were calculated by Duncan's new multiple range method
300
using DPS version 14.5.
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The fungicidal test results of compounds 1-37 against CDM are listed in Tables
302
1-4.
303
RESULTS AND DISCUSSION
304
Synthesis. According to the schemes shown in Figures 2-9, 37 title
305
compounds were synthesized with yields of 40-80%. Chemical structures of
306
compounds 1-37 are shown in Tables 1-4. The synthesized compounds were
307
characterized by 1H NMR and elemental analyses/HRMS. The chemical
308
structure of lead compound 9 was unequivocally determined by x-ray
309
crystallography (Figure 4). All spectral and analytical data were consistent with
310
the assigned structures.
311
Structure-Activity Relationships (SAR).
312
Discovery of lead compounds 3 and 4
313
Initially, in order to verify the feasibility of our design concept, mimicking the
314
skeleton of diflumetorim, the starting materials, phenol and
315
6-chloronicotinonitrile, were employed to obtain the key intermediate
316
(6-phenoxypyridin-3-yl)methanamine, from which we obtained compounds 1
317
and 2. These compounds can be considered as diflumetorim analogs in which
318
the phenyl moiety is replaced with a pyridinyl moiety. The bioassay results
319
indicated that the synthesized compounds had activity against four important
320
fungal diseases, CDM, cucumber grey mold (CGM), wheat powdery mildew
321
(WPM) and southern corn rust (SCR),25 particularly against CDM. The activity
322
of compound 1 (R1 = CH3) against CDM was very weak (EC50 > 400 mg/L)
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323
compared with diflumetorim (EC50 = 23.06 mg/L), however, compound 2 (R1 =
324
C2H5) displayed activity equal to diflumetorim (EC50 = 23.17 mg/L). On the
325
basis of these results, CDM was selected as the test target for optimization.
326
Next, taking inspiration from the structure of insecticide flufenerim, which is
327
similar to diflumetorim,26 we synthesized compounds 3 and 4 with Alk =
328
CH2CH2 (Table 1). These two compounds exhibited higher fungicidal activity
329
than the corresponding analogs with Alk = CH2 (7.33 mg/L and 7.02 mg/L
330
respectively versus 23.06 mg/L), which encouraged us to synthesize additional
331
analogs.
332
Optimization of lead compounds 3 and 4
333
Using compounds 3 and 4 as a starting point for additional analogs, we next
334
turned our attention to modifications in the phenyl ring including changes of
335
substituent position, numbers of substituents, the electronic properties and
336
spatial characteristics of the substituent groups (Table 2). First, six compounds,
337
5-10, were synthesized to evaluate the position effect of the substituent on
338
fungicidal activity using the chlorine atoms as probes. When a single chlorine
339
was present in the ortho-position of phenyl ring (compounds 5 and 6), there
340
was no improvement in fungicidal activity. When a single chlorine was present
341
in the meta-position of phenyl ring (compounds 7 and 8), the fungicidal activity
342
decreased significantly. When a single chlorine was present in the
343
para-position (compounds 9 and 10), we observed a significant increase in
344
fungicidal activity; compounds 9 and 10 gave much lower EC50 values of 0.19
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345
mg/L and 2.65 mg/L, respectively, versus initial leads 3 and 4 (7.33 mg/L and
346
7.02 mg/L), especially compound 9 displayed superior control to the
347
commercial fungicides flumorph and cyazofamid, indicating that single
348
substitution at the para-position probably has a positive effect on bioactivity.
349
Next, we further selected typical electron-donating groups CH3 and OCH3, and
350
electron-withdrawing group CF3 to carry out some fine modification on
351
para-position of phenyl ring to investigate the electronic properties of
352
substituents. We synthesized six compounds, 11 and 12 with the electron
353
donating group (CH3), 13 and 14 with the electron donating group (OCH3), 15
354
and 16 with the electron withdrawing group (CF3) respectively (Table 2). The
355
bioassay results showed that these six compounds 11 to 16 were less
356
efficacious than compounds 9 and 10 (3.13 - 11.65 mg/L versus 0.19 mg/L,
357
2.65 mg/L), indicating that higher electron donating or withdrawing group has
358
possibly a negative effect on bioactivity. Then in order to assess the effect of
359
substituent numbers specifically relating to double substituted phenyl on
360
fungicidal activity, we employed some low cost and commonly used phenol
361
intermediates bearing two substituents to prepare compounds 17 to 24 (Table
362
2). Compound 18 with Rn of 2-CH3-4-Cl showed low fungicidal activity with
363
30.25 mg/L EC50 and the other compounds of this type 17, 19 to 23 were also
364
less active, with EC50 values ranging from 3.75 mg/L to 10.44 mg/L. However,
365
compound 24 (Table 2) with Rn = 2-Cl-4-CF3 showed promising activity (EC50
366
of 1.10 mg/L) which is approaching of compound 9 and may be considered for
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367
exploring new compounds with improved activity. So far, the result of the
368
optimization of compounds 3 and 4 is identification of compound 9 with para-Cl
369
group on phenyl ring as the optimized structure, the third lead compound with
370
greatly improved fungicidal activity.
371
Effect of linker between pyrimidine and pyridine groups on fungicidal
372
activity
373
To determine if changing the linker between pyrimidine and pyridine groups
374
(X-Alk) would bring enhanced fungicidal activity, we synthesized and screened
375
a series of compounds 25 to 31 (Table 3). When CH2CH2 was replaced with
376
CH2 on Alk and keeping the X group fixed as NH, both compounds 25 which
377
gave EC50 of 7.91 mg/L and 26 which showed EC50 of 5.79 mg/L were much
378
less efficacious than compound 9 which gave EC50 of 0.19 mg/L. These results
379
were consistent with the conclusion obtained above. When introducing O-CH2
380
into X-Alk instead of NH-CH2CH2, both compounds 27 and 28 exhibited a
381
sharply reduced efficacy compared with the lead compound 9 (more than 400
382
mg/L for compound 27, 137.8 mg/L for compound 28 versus 0.19 mg/L for
383
compound 9). The branched Alk in diflumetorim was employed in compounds
384
29 and 30 with Alk = CH(CH3). The replacement of CH2 with CH(CH3) did not
385
enhance fungicidal activity. The introduction of t-Bu into the para-position on
386
phenyl suggests that the presence of a group with large spatial effect probably
387
leads to considerable reduction in activity. A possible explanation for the lower
388
activity associated with large substituents is that such substituents would block
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389
the interaction of target enzyme with these bulky compounds.10 Additionally,
390
we considered a urea bridge, an extensively utilized moiety in herbicides.3c We
391
designed NH(CO)NH substructure for X group based on compound 9 to
392
achieve compound 31. However, disappointedly, compound 31 had hardly any
393
fungicidal activity with a very high EC50 value of more than 400 mg/L.
394
Activity of different position of pyrimidinamine group attached to
395
pyridine ring
396
To investigate the effect of different position of pyrimidinamine group attached
397
to pyridine ring on the activity of intact molecules, six positional isomers were
398
designed and synthesized (Table 4). Generally speaking, when
399
pyrimidinamine group was attached to the 3-position of the pyridine ring
400
(compounds 32 to 35), the fungicidal activity indicated the lowest, followed by
401
4-position analogues 36 and 37, showing obviously higher activity especially
402
compound 36 with EC50 of 6.49 mg/L, but still much lower than compound 9. In
403
addition, we noted that compounds with CH3 on R1 were much more active in
404
contrast with their counterparts of C2H5 in this series. The poor results of
405
compounds 32-37 in Table 4 suggested that when the pyrimidinamine group
406
was attached to the pyridine ring at 3- or 4-position, the fungicidal activity
407
diminished dramatically in this class of compounds.
408
Based on data presented in Tables 1-4, a clear-cut, well-defined relationship
409
between chemical structure and biological activity has taken shape by
410
examining the effect of the substituted position, the numbers of substituents,
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411
the electronic properties and spatial characteristics of the substituent groups
412
on phenyl ring, linker between pyrimidine and pyridine groups, and the
413
different position of pyrimidinamine group attached to pyridine ring. The
414
para-position single chlorine substituted phenyl derivative, compound 9,
415
showed significantly improved fungicidal activity compared to the
416
commercialized controls. Compound 24 with Rn of 2-Cl-4-CF3 is a good
417
candidate for further exploration of new compounds with improved activity.
418
Variation in the linker between pyrimidine and pyridine groups did not enhance
419
fungicidal activity, while the 5-position where pyrimidinamine group is attached
420
to pyridine ring provided optimal activity.
421
From the above we can conclude that compound 9 is the optimal structure with
422
desired activity. It offers a control with EC50 value of 0.19 mg/L against CDM,
423
significantly higher than commercial fungicides diflumetorim, flumorph and
424
cyazofamid. Compound 9, which has also shown activities against CSR, WPM
425
and RB in addition to CDM,25 is a promising candidate for further development.
426
This study demonstrates the effectiveness of our design concept by using
427
intermediate derivatization method to discover bioactive compounds. The
428
discovery of new pyrimidinamine fungicides may delay the development of
429
resistance and contribute to resistance management. Further synthesis of
430
analogs, structure optimization studies and field trials of compound 9 are in
431
progress.
432
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ACKNOWLEDGEMENT
434
We thank Dr. Mark Dekeyser (Canada) for assistance with manuscript
435
preparation.
436 437
SUPPORTING INFORMATION
438
Characterization for intermediates M-1, 3-7, 11-20, and compounds 1-8, 10-25,
439
28, 29, 32-37. This material is available free of charge via the Internet at
440
http://pubs.acs.org. The atomic coordinates for compound 9 have been
441
deposited at the Cambridge Crystallographic Data Centre. CCDC ID: 1501756
442
contains the supplementary crystallographic data for this paper. These data
443
can be obtained free of charge from The Cambridge Crystallographic Data
444
Centre via www.ccdc.cam.ac.uk/data_request/cif.
445 446
AUTHOR INFORMATION
447
Corresponding Author
448
*(M.W.) Tel: +86-(0)10-62734093. E-mail:
[email protected].
449
*(C.L.) Tel: +86-(0)24-85869078. Fax: +86-(0)24-85869137. E-mail:
450
[email protected].
451
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452
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453
(1) Mcdougall, P. Phillips McDougall AgriService; Phillips McDougall
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Design, synthesis and structure-activity relationship of novel diphenylamine
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(17) Chai, B. S.; Liu, C. L.; Li, H. C.; He, X. M.; Luo, Y. M.; Huang, G.; Zhang,
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H.; Chang, J. B. Design, synthesis and acaricidal activity of novel strobilurin
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substituted pyrazoles. Pest Manag. Sci. 2010, 66, 107-112.
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(20) Li, M.; Liu, C. L.; Zhang, J.; Wu, Q.; Hao, S. L.; Song, Y. Q. Design,
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synthesis and structure-activity relationship of novel insecticidal
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dichloro-allyloxy-phenol derivatives containing substituted pyrazol-3-ols. Pest
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Manag. Sci. 2013, 69, 635-641.
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M.; Guan, A. Y.; Song, Y. Q.; Lan, J.; Ma, S.; Ru, L. J. Pyrazolyl pyrimidinamine
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compound and application thereof. PCT Int. Appl. WO 2015085935, June 18,
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J. Z.; Yang, F.; Song, Y. Q.; Liu, C. L. Substituted pyrimidinamine compound
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and uses thereof. CN Patent 104292169, Jan 21, 2015.
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(23) Drumm, J. E. III.; Lett, R. M.; Stevenson, T. M. Preparation of fungicidal
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and miticidal and arthropodicidal aminopyrimidine agrochemicals. PCT Int.
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Appl. WO 9507278, Mar 16, 1995.
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(24) Barlaam, B.; Fennell, M.; Germain, H.; Green, T.; Hennequin, L.;
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Morgentin, R.; Olivier, A.; Ple, P.; Vautier, M.; Costello, G. New heterocyclic
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(25) Guan, A. Y.; Yang, F.; Wang, J. F.; Chen, W.; Fan, X. X.; Wang, X. L.; Chen,
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(26) Ghanim, M.; Lebedev, G.; Kontsedalov, S.; Ishaaya, I. Flufenerim, a novel
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of
4-(2-chloro-5-methoxyanilino)quinazolines
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as
potent
and
Journal of Agricultural and Food Chemistry
539
FIGURE CAPTIONS
540 541
Figure 1. An overview of the design of new pyrimidinamine derivatives
542
containing an aryloxy pyridine moiety
543
Figure 2. Synthetic route to compounds 1, 2, 25 and 26
544
Figure 3. Synthetic route to compounds 3-24
545
Figure 4. X-ray single-crystal diffraction of compound 9.
546
Figure 5. Synthetic route to compounds 27 and 28
547
Figure 6. Synthetic route to compounds 29 and 30
548
Figure 7. Synthetic route to compound 31
549
Figure 8. Synthetic route to compounds 32-35
550
Figure 9. Synthetic route to compounds 36 and 37
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Journal of Agricultural and Food Chemistry
TABLES Table 1. Chemical Structures and Fungicidal Activity of Pyrimidinamine Derivatives Containing Aryloxy Pyridine Moiety (compounds 1 to 4)
a
compound
R1
Alk
EC50 (mg/L)
95% da
1
CH3
CH2
>400
/b
2
C2H5
CH2
23.17
15.86-33.86
3
CH3
CH2CH2
7.33
3.33-16.12
4
C2H5
CH2CH2
7.02
3.12-15.80
diflumetorim
23.06
16.13-32.95
flumorph
7.77
6.48-9.32
cyazofamid
1.01
0.62-1.63
confidence limit. b the value could not be measured accurately.
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Table 2. Chemical Structures and Fungicidal Activity of Pyrimidinamine Derivatives Containing Aryloxy Pyridine Moiety (compounds 5 to 24)
a
EC50 (mg/L)
95% da
H
7.33
3.33-16.12
C2H5
H
7.02
3.12-15.80
5
CH3
2-Cl
13.10
3.27-52.39
6
C2H5
2-Cl
26.40
17.75-39.26
7
CH3
3-Cl
>400
/b
8
C2H5
3-Cl
>400
/b
9 (Lead 3)
CH3
4-Cl
0.19
0.14-0.26
10
C2H5
4-Cl
2.65
1.61-4.35
11
CH3
4-CH3
3.13-6.25
/b
12
C2H5
4-CH3
5.50
3.57-8.50
13
CH3
4-OCH3
5.54
3.75-8.16
14
C2H5
4-OCH3
11.65
9.26-14.66
15
CH3
4-CF3
3.13-6.25
/b
16
C2H5
4-CF3
3.13-6.25
/b
17
CH3
2-CH3-4-Cl
9.44
3.34-26.65
18
C2H5
2-CH3-4-Cl
30.25
19.62-46.65
19
CH3
2,4-Cl2
9.11
3.15-26.35
20
C2H5
2,4-Cl2
10.44
3.93-27.72
21
CH3
2,5-Cl2
6.61
4.67-9.37
22
C2H5
2,5-Cl2
3.75
2.33-6.04
23
CH3
2-Cl-4-CF3
6.47
4.57-9.16
24
C2H5
2-Cl-4-CF3
1.10
0.80-1.52
diflumetorim
23.06
16.13-32.96
flumorph
7.77
6.48-9.32
cyazofamid
1.01
0.62-1.63
compound
R1
Rn
3 (Lead 1)
CH3
4 (Lead 2)
confidence limit. b the value could not be measured accurately. 28
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Journal of Agricultural and Food Chemistry
Table 3. Chemical Structures and Fungicidal Activity of Pyrimidinamine Derivatives containing Aryloxy Pyridine Moiety (compounds 25 to 31)
compound
R1
X
Alk
R
EC50 (mg/L)
95% da
9 (Lead 3)
CH3
NH
CH2CH2
Cl
0.19
0.14-0.26
25
CH3
NH
CH2
Cl
7.91
3.97-15.77
26
C2H5
NH
CH2
Cl
5.79
4.02-8.36
27
CH3
O
CH2
Cl
>400
/b
28
C2H5
O
CH2
Cl
137.84
51.51-368.85
29
C2H5
NH
CH(CH3)
H
18.76
11.87-29.66
30
C2H5
NH
CH(CH3) t-Bu
69.54
40.44-119.59
31
CH3
NH(CO)NH
CH2CH2
>400
/b
diflumetorim
23.06
16.13-32.96
flumorph
7.77
6.48-9.32
cyazofamid
1.01
0.62-1.63
a
Cl
confidence limit. b the value could not be measured accurately.
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Table 4. Chemical Structures and Fungicidal Activity of Pyrimidinamine Derivatives containing Aryloxy Pyridine Moiety (compounds 32 to 37) R1 Cl
N
4 N
N H
3
O N
5
R
compound
R1
position of pyrimidinamine group attached to pyridine ring
9 (Lead 3)
CH3
5-position
Cl
0.19
0.14-0.26
10
C2H5
5-position
Cl
2.65
1.61-4.35
32
CH3
3-position
H
60.84
44.32-83.53
33
C2H5
3-position
H
326.58 179.20-595.16
34
CH3
3-position
Cl 232.59 177.24-305.23
35
C2H5
3-position
Cl
>400
/b
36
CH3
4-position
Cl
6.49
2.45-17.19
37
C2H5
4-position
Cl
92.14
71.00-119.57
diflumetorim
23.06
16.13-32.96
flumorph
7.77
6.48-9.32
cyazofamid
1.01
0.62-1.63
a
R
EC50 (mg/L)
95% da
confidence limit. b the value could not be measured accurately.
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Journal of Agricultural and Food Chemistry
FIGURE GRAPHICS
Figure 1
R
O
O
Cl
NC
N R=ClCH2 or COOH
N
starting material
N H3C F
HN
OCF3 Cl N H
Cl
key intermediate
CH3
N
F N
H3C
insecticide flufenerim
O
F
N
fungicide diflumetorim
R1
high active compounds
R1
Cl
N N
X
N
H2N
optimization
O
Alk N
Rn
Cl
N N
N H
O N
lead compounds
31
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Page 32 of 41
Figure 2
HO NC
Cl
NaH/DMF, 100 oC
N
R1
R1
N
Cl
N N
N H
NC
R
R
N O
N
R
N O
Cl Cl
K2CO3/DMF 80 oC
[M-1]
Raney-Ni/ NH3.H2O/ethanol room temperature H2N
[H]
R
N O [M-2]
Compounds 1, 2, 25 and 26
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Figure 3
HO O H3C
O
Rn
O
H3C
N
O
N
Rn
o
Cl
NaH/DMF, 100 C
O [M-3] anhydrous ether/ Red-Al toluene, 0 oC
Cl
N
Rn O
SOCl2
HO
N
CH2Cl2, 0 oC
Rn O
[M-5] 18-Crown-6/ DMSO, 40 oC NC
[M-4]
NaCN
[H]
N
Rn O [M-6]
H2N
N
Raney-Ni/ NH3.H2O/ethanol room temperature
O Cl N
Cl
N
[M-7]
R1 N
R1
Rn
Cl
K2CO3/DMF 80 oC N
O Rn
N
N H
Compounds 3-24
33
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Figure 4
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Page 35 of 41
Journal of Agricultural and Food Chemistry
Figure 5
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Figure 6
CH3
HO
O
CH3
R
O
N K2CO3/DMF, 100 oC
Cl
O
R1
R1 Cl
N N
Cl
N
N H
N
CH3 R
N O
R
N
Cl
CH3
[M-8]
CH3COONH4 /sodium cyanoborohydride /methanol room temperature
K2CO3/DMF H2N 80 oC
R
N O [M-9]
Compounds 29 and 30
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Figure 7
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Figure 8
H3C
O
O
R H3C
HO
O
O O
Cl o
NaH/DMF, 100 C
N
HO Red-Al
O
anhydrous ether/toluene R 0 oC [M-11]
N
N
R [M-12]
CH2Cl2, 0 oC SOCl2 NH2
NC [H] O N
[M-15]
R1
K2CO3/DMF N 80 oC N N
Cl O
NaCN 18-Crown-6/ R DMSO 40 oC [M-14]
Raney-Ni/ N NH3.H2O/ R ethanol room temperature Cl Cl
N
R1
NH Cl O N
R
Compounds 32-35
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O N
R [M-13]
Page 39 of 41
Journal of Agricultural and Food Chemistry
Figure 9
H 3C
HO
O
Cl H C 3
Cl
O
O
O
NaH/DMF 100 oC
N
O N
OH
Red-Al
O
anhydrous Cl ether/toluene 0 oC [M-16]
N
Cl [M-17]
CH2Cl2, 0 oC H 2N
[H] O N [M-20]
K2CO3/DMF N 80 oC
R1
Raney-Ni/ NH3.H2O/ ethanol room temperature
O N
NaCN 18-Crown-6/ Cl DMSO 40 oC [M-19]
Cl N
R1
Cl
CN
Cl
Cl
N N
NH Cl N
O
Compounds 36 and 37
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SOCl2
Cl O N
Cl [M-18]
Journal of Agricultural and Food Chemistry
GRAPHIC FOR TABLE OF CONTENTS
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Journal of Agricultural and Food Chemistry
CH3
O R N
R=ClCH2 or COOH
Cl
N
Cl H 2N
N
Cl
N
N H
O N
Compound 9
Cl
Intermediate Derivatization Method COMPOUND EC50 (mg/L) against CDM Compound 9 0.19 Diflumetorim 23.06 Flumorph 7.77 Cyazofamid 1.01
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