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Agricultural and Environmental Chemistry
Transcriptomic and phytochemical analysis reveal rootmediated resource-based defense response to leafherbivory by Ectropis oblique in tea plant (Camellia sinensis) Hua Yang, Yanan Wang, Longbao Li, Fangdong Li, Yaxian He, Jianqiang wu, and Chaoling Wei J. Agric. Food Chem., Just Accepted Manuscript • DOI: 10.1021/acs.jafc.9b00195 • Publication Date (Web): 27 Mar 2019 Downloaded from http://pubs.acs.org on March 28, 2019
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Journal of Agricultural and Food Chemistry
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Transcriptomic
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root-mediated
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leaf-herbivory by Ectropis oblique in tea plant (Camellia
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sinensis)
and
phytochemical
resource-based
analysis
defense
reveal
response
to
5 6
Hua Yang 1,2*, Yanan Wang 1, Longbao Li 2, Fangdong Li 1,2, Yaxian He 1, Jianqiang
7
Wu 3, Chaoling Wei 1#
8 9
1 State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural
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University, 130 Changjiang West Road, Hefei, 230036, China
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2 Department of Applied Chemistry, School of Science, Anhui Agricultural
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University, 130 Changjiang West Road, Hefei, 230036, China
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3 Key Laboratory of Economic Plants and Biotechnology, Kunming Institute of
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Botany, Chinese Academy of Sciences, Kunming, 650201, China
15 16
#
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Email address:
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[email protected] (Hua Yang)
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[email protected] (Yanan Wang)
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[email protected] (Longbao Li)
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[email protected] (Fangdong Li)
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[email protected] (Yaxian He)
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[email protected] (Jianqiang Wu)
Corresponding author:
[email protected] ; Tel/Fax: +86 551 65786765
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[email protected] (Chaoling Wei)
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ABSTRACT
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Leaf-herbivory on tea plants (Camellia sinensis) by tea geometrids (Ectropis oblique)
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severely threaten the yield and quality of tea. In previous work, we found that local
28
defense response was induced in damaged leaves by geometrids at transcriptome level.
29
Here, we investigated the systemic response triggered in undamaged roots and the
30
potential role of roots in response to leaf-herbivory. Comparative transcriptome
31
analysis and carbohydrate dynamics indicated that leaf-herbivory activated systemic
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carbon reallocation to enhance resource investment for local secondary metabolism.
33
The crucial role of JA and the involvement of other potential hormone signals for
34
local and systemic signaling networks were supported by phytohormone
35
quantification and dynamic expression analysis of phytohormone-related genes. This
36
work represents a deep understanding of the interaction of tea plants and geometrids
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from the perspective of systems biology, and reveals that tea plants have evolved
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intricate root-mediated resource-based resistance strategy to cope with geometrid
39
attack.
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KEYWORDS
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Camellia sinensis; Ectropis oblique; leaf-herbivory; systemic root response; carbon
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reallocation; phytohormone signaling
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INTRODUCTION
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Plants have formed complex and ingenious defense systems in response to insect
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herbivory during the evolution. Inducible defense response is the resistance generated
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only when plants are attacked by insect herbivores, which is one of the important
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strategies employed by plants.1 Due to economical utilization of plant resource and
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efficient exertion of defense roles, inducible defense confers environmental adaptation
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to plants. Until now, the inducible defense in local response elicited in the damaged
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leaves by insect herbivory has been detailed deciphered in many plant species.1, 2
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Recently, studies have increasingly found systemic response can also be triggered in
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belowground roots by leaf-herbivory.3 The synthesis of defensive chemicals and
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proteins in roots playing one of the most important roles for enhancement of plant
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resistance has been documented in tobacco and maize plants.4-7 Another potential role
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of root is as a mediator of induced tolerance-defense trade-offs through a dynamic
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storage of primary metabolites. The observed increase of carbon allocation to the
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roots in the GAL83-silenced tobacco plants attacked by Manduca sexta,8 and the
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rapid changes in carbohydrate transport and partitioning to storage organs in Populus
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induced by jasmonic acid (JA),9 indicated that the herbivory-induced resource
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sequestration may act as a tolerance mechanism. However, several studies in tobacco
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recently discovered leaf-herbivore attack can also reduce carbon reserves and
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regrowth from the roots, indicating that roots may serve as dynamic producers and
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storage of resources and nutrients that can be transported through vascular and
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utilized for aboveground defense.10, 11 Besides, the active roles of roots in defense
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against leaf attacker involve environmental sensors and root–shoot signal emitters.12,
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The research of local and systemic molecular responses on the transcriptional
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level facilitates us to further comprehend the molecular mechanism of the intricate
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plant-insect interaction and the potential role of the root for the inducible defense. In
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recent years, the transcriptional changes generated in roots in response to
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leaf-herbivory have been investigated in poplar,14 maize,15,
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tobacco.18 These studies discovered that transcriptional changes involved in primary
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and/or secondary metabolism, defense and signal transduction can be induced in
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systemic response, and these changes can be different from those elicited in local
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responses by leaf attackers. However, based on the comparisons of the above
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mentioned studies, leaf-herbivory in different plant species can trigger various and
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complex local and systemic responses.
16
cabbage,17 and
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Insect herbivory elicits complex local and systemic signaling networks to
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mediate local and systemic responses in plants. In the induced signaling networks, JA
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or JA derivatives are usually pivotal phytohormones acting as the essential
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components of local and systemic signals.19-21 In addition, local signaling network has
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been known that it contains various early signaling events, such as recognition of
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elicitors by multiple receptors, initiation of Ca2+ flux and calcium sensors,
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mitogen-activated protein kinases (MAPKs) signaling, production of reactive oxygen
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species (ROS), activation of transcription factors, JA biosynthesis and perception, and
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crosstalk of JA and other phytohormones.1,
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events involved in leaf-to-root systemic signaling mechanism have been poorly
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elucidated until now. Some emerging evidences that crosstalk of JA and other
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phytohormones were also employed in roots in response to leaf-herbivory have been
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recently provided, such as the elicitation of JA and ethylene (ET) signaling in maize,16
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JA and auxin (IAA) signaling in Nicotiana attenuata,10, 24 and JA and salicylic acid
19, 22, 23
However, the early signaling
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(SA) signaling in pepper plants.25 Current studies suggested that the distinct systemic
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signaling mechanisms were triggered in different plant species or by different kinds of
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insect herbivores. However, the previous research mainly focused on herbaceous
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plants, the data with respect to systemic root response and signaling network in
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woody plants induced by leaf-herbivory were severely insufficient.
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Tea plant is an economically important woody species, whose leaves are
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processed into numerous kinds of tea serving as one of health-promoting beverages.26,
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27
However, larvae of tea geometrids, one of the most common insect herbivores of
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tea plants in China, can cause seriously chewing damage on leaves, and severely
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threaten the yield and quality of tea.28, 29 Local defense response in damaged tea
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leaves induced by geometrid attack has been detailed studied. Cai et al. provided the
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chemical evidence on emission of volatiles induced by geometrid attack.30 Our and
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Wang’s previous work revealed that local defense response was induced in damaged
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leaves by geometrid attack at transcriptome level.28, 29 Wang et al. further discovered
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geometrid attack induced local defense at transcriptomic and metabolomic level.31
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However, until now, little is known about systemic response elicited in roots by
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leaf-herbivory, the role of roots for the resistance of tea plants, and the systemic
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signaling mechanism underlying the interaction of tea plant with E. oblique.
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In the present study, to investigate the role of roots in tea plants in response to
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leaf-herbivory by geometrids, the local and systemic transcriptome profiling were
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generated and compared to decipher the differences of molecular mechanisms
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between local and systemic responses. Phytohormone measurement and the analysis
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of dynamic expressional pattern of phytohormone-related genes permitted us to
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further comprehend the local and systemic phytohormone signaling. The study
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represents a valuable resource for deep understanding the important roles of roots and 6
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the responsive systemic phytohormone signaling for the inducible resistance in tea
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plants by leaf-herbivory.
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MATERIALS AND METHODS
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Plant materials and insect infestation
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All plant materials were collected from the two-year-old tea plants (Camellia
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sinensis cv. Shuchazao) growing in plastic pots (35 cm in height, 30 cm in diameter)
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with consistent water and fertilizer management in the tea plantation of Anhui
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Agricultural University, Hefei, China. The healthy tea plants with uniform height and
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canopy width were selected for insect herbivory and mechanical damage treatments.
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After E. oblique insects at the third larval stage were starved for 8 h, they were
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distributed evenly on the leaves (20 insects per tea plant) until 1/3 of each leaf was
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consumed. After quick washing the adherent mud off the roots with sterile water, the
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rest of the attacked leaves (EL samples) and the tender lateral roots (ER samples)
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from the same plants by leaf-herbivory were collected. In the mechanical damage
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treatment, tea leaves were damaged by autoclaved scissors to an extent similar to E.
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oblique damage. Samples in three biological replicates were collected at 3, 6, 9, 12,
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and 24 h after leaf-herbivory or mechanical damage treatment. Leaves and roots from
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tea plants without treatment were used as control samples (control-leaf, CKL;
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control-root, CKR). All the collected samples were quickly frozen in liquid nitrogen
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and then stored at -80°C for further use.
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RNA-Seq, de novo assembly and functional annotation
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Total RNA was extracted from the collected samples using the RNAprep Pure Plant
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Kit (Tiangen, China) following the manufacturer’s instruction. Equal amounts of 7
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RNA from samples collected at 3, 6, 9, 12, and 24 h after leaf-herbivory were pooled
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for EL, ER, CKL and CKR samples, and three biological replicates were obtained for
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each
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spectrophotometry (Nanodrop, ThermoFisher, USA) was used for the preparation of
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sequencing cDNA libraries as described by Tai et al.,32 and the quality of the
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sequencing libraries was examined using an Agilent 2100 Bioanalyzer. Finally, the
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libraries were sequenced using Illumina HiSeq™ 2000 at Beijing Genomics Institute
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(Shenzhen, China). For each sequencing libraries, high-quality clean reads were
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generated after quality control, and they were mixed and assembled using the Trinity
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short-read assembling program.33 All assembled unigenes were annotated using
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BLASTx against the NR, Swiss-Port, and clusters of orthologous groups (COG)
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databases with an E-value threshold of 1e-5.34 Gene ontology (GO) classification and
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KEGG pathways were also assigned to the assembled unigenes as described by Shi et
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al.27
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Identification of differentially expressed genes
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To identify the genes induced by E. oblique attack, all assembled unigenes from our
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transcriptomes and other published transcriptomes induced by E. oblique attack,28, 29,
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31
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genes. Clean reads in each of the twelve RNA-Seq dataset were mapped against the
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reference genes, and the gene expression level of each gene was quantified according
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to the amounts of uniquely mapped reads by the method of fragments per kilobase of
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exon model per million mapped reads (FPKM) using Cufflinks (version 1.0.3).35
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DEGseq R package,36 was applied to identify the differentially expressed genes
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(DEGs) in EL versus CKL (EL-vs-CKL, referred to as local group) and in ER versus
of
them.
High-quality RNA
validated
by
gel
electrophoresis
and
and the gene models from tea plant genome,26 were combined used as reference
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CKR (ER-vs-CKR, referred to as systemic group). To judge the significance of
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differential expression of each gene, the false discovery rate (FDR) ≤ 0.001 and the
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absolute value of log2Ratio ≥ 1 were set as the thresholds.
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Quantitation of phytohormones
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The extraction and quantitation of phytohormones (JA, JA-Ile, ABA, and SA) were
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performed in the leaves and roots of EL, ER, CKL and CKR samples (n = 9) collected
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at 3, 6, 9, 12, and 24 h after leaf-herbivory. Approximately 100 mg fresh weight of
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sample was ground to powder in liquid nitrogen. The powder, with the addition of a
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mixture of internal standards including 200 ng [2H2] JA and 40 ng each of
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JA-[13C6]-Ile, [2H4] SA and [2H6] ABA, was extracted with 1 ml of ethyl acetate by
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vortexing for 10 min. After centrifugation at 16,000 g for 15 min at 4 °C, the
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supernatant was obtained and then evaporated until dry using a vacuum concentrator
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(Eppendorf, Germany) at 30 °C. The dried residues were diluted in 500 µL of 70%
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methanol and then filtered through a 0.22 mm cellulose acetate filter. Phytohormones
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were separated and detected using ProntoSIL C18 analytical column (50 × 2 mm, 5
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μm) and a 1200 HPLC (Varian, USA) coupled with a triple quadrupole mass
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spectrometer (API 5000 LC/MS/MS, Applied Biosystems, USA). Phytohormone
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contents were quantified based on the ratio between their ion intensity with their
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respective internal standards.
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GC-MS analysis of carbohydrate metabolites
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The collected tea leaf and root samples (n = 9) were dried by a lyophilizer (-60 °C)
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and then ground into powder in liquid nitrogen. Each tea sample (200 mg) was
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extracted three times with methanol/water solution (1:1, v/v). The supernatant was
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pooled and adjusted to 10 ml with a suitable volume of the methanol/water solution. 9
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For the preparation of the samples for GC-MS analysis according to the protocol of
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Zhang et al.,37 with a few modifications. Briefly, ribitol was added into the extract as
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an internal standard with the final concentration of 0.1 mg·mL-1. 100 µL of the
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resultant extract was lyophilized under low temperature (-60 °C). The dried sample
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was dissolved in 100 µL of hydroxylamine hydrochloride (25 mg·mL-1 in pyridine)
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and incubated at 70 °C for 50 min for oximation reaction. Subsequently,
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trimethylsilylation reaction was performed at 70 °C for 2 h after the addition of 100
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µL of BSTFA-TMCS [N, O-Bis-(trimethylsilyl)-trifluoroacetamide containing 1%
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trimethylchlorosilane] into the sample. The derived sample was equilibrated to room
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temperature before analysis. Authentic standards of D-fructose, D-glucose, sucrose,
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L-malic acid and citrate and samples were respectively analyzed an Agilent HP-5MS
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column (19091S-436, 30 m × 0.25 mm × 0.25 μm, Agilent Technologies, CA, USA)
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and an Agilent 7890B GC system (Agilent Technologies, CA, USA) coupled with an
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Agilent 7000B mass detector Agilent Technologies, CA, USA). Qualitative Analysis
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of MassHunter Acquisition Data software (version B.07.00) was used for data
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acquisition.
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qRT-PCR analysis
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The gene-specific primers were designed using Primer Premier software (version 6.0;
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Supplementary Table S1). Total RNA was extracted using the RNAprep Pure Plant
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Kit (Tiangen, China), and then was used for the synthesis of single-stranded cDNA
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using the PrimeScript RT Reagent Kit (Takara). The qRT-PCR reaction was
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performed containing 300 nM each primer and 2 µL 10-fold diluted cDNA template.
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The glyceraldehyde-3-phosphate dehydrogenase gene (GAPDH) was used as an
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internal reference gene. All qRT-PCR analyses were performed in three biological 10
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and three technical replications. The relative expression was calculated using the
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2−ΔΔCt method.38
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RESULTS
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Differential transcriptome reconfiguration between leaf and root
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induced by leaf-herbivory
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To investigate the local and systemic responses on transcriptome level induced in
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damaged leaves and undamaged roots after E. oblique attack on leaves, a total of 12
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sequencing libraries were generated from CKL, EL, CKR and ER samples, with 3
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biological replicates per sample. The output of high-quality clean reads from
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paired-end Illumina RNA-Seq added up to 47.5 Gb (Supplementary Table S2). In
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total, 86,487, 77,781, 92,013 and 90,783 unigenes were constructed based on de novo
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assembly for CKL, EL, CKR and ER samples, respectively (Supplementary Table S3).
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By combining all non-repetitive unigenes into a whole reference transcriptome dataset,
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102,845 unigenes were achieved with a N50 size of 1,153 bp and average length 724
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bp (Supplementary Table S3). A total of 68,907 (67.0%) unigenes were annotated,
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containing 63,588 (92.3 %), 41,126 (59.7 %), 37,179 (54.0 %), 23,813 (34.6 %),
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46,027 (66.8 %) annotations assigned against NR, Swiss-Prot, KEGG, COG and GO
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databases, respectively (Supplementary Fig. S1~S3 and Table S4). The annotated
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unigenes were classified into 25 COG categories (Supplementary Fig. S2), 48 GO
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subgroups in three main groups (Supplementary Fig. S3) and 100 KEGG pathways
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(Supplementary Table S4).
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Based on the comparative transcriptome analysis, a total of 5,418 DEGs (3,769
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up-regulated and 1,649 down-regulated genes) from local group, and 9,912 DEGs
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(7,050 up-regulated and 2,852 down-regulated genes) from systemic group were 11
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identified, respectively. Furthermore, there were 334 common DEGs found between
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the two groups, but 5,084 and 9,568 DEGs were specific in local and systemic groups,
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respectively (Figure 1a). According to the KEGG pathway annotations, more systemic
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DEGs were involved in seven subcategories of 'metabolism' category (carbohydrate,
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lipid, energy, nucleotide, amino acid and other amino acid metabolism, and
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biosynthesis of secondary metabolites), three subcategories of 'genetic information
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processing' category (translation; transcription; and folding, sorting and degradation)
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and one subcategory of 'cellular processes' category (transport and catabolism),
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whereas more local DEGs were found in four subcategories, including metabolism of
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terpenoids and polyketides, biosynthesis of other secondary metabolites, signal
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transduction, and environmental adaptation (Figure 1b). These results suggested that
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leaf-herbivory triggered a larger scale of transcription reconfiguration occurred in
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undamaged roots than in damaged leaves, and the induced molecular mechanism of
249
systemic response was distinct from that of local response.
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Activation of local defense genes
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To compare the transcriptional characterization of the local and systemic defense
252
responses, defense genes involved in several secondary metabolism pathways, cell
253
wall remodeling and resistant proteins were investigated. For secondary metabolism, a
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large amount of genes involved in biosynthesis of phenylpropanoids, flavonoids,
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caffeine, lignins and terpenoids were activated in local group. In contrast, a slight
256
activation of these genes was found in systemic group. Similarly, PPO (polyphenol
257
oxidase) and MRP (multidrug resistance protein) genes were mainly activated in local
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group. However, genes encoding cellulose synthases (CSs) and xyloglucan
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endotransglucosylase/hydrolases (XTHs) responsible for cell wall remodeling and 12
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β-Gluc (resistant proteins β-1,3-glucanase), PI (protease inhibitor) and PR
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(pathogenesis-related protein) genes were obviously enhanced in systemic group but
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slightly up-regulated in local group. In addition, chitinase genes and genes associated
263
with biosynthesis of green leaf volatiles (GLV) were actively employed in both local
264
and systemic groups (Figure 2 and Supplementary Table S5). For most of above
265
mentioned defense genes, tissue-specific transcripts were observed between the two
266
groups. Taken together, a great deal of defense genes, especially genes involved in
267
secondary metabolism pathways, were highly activated for the elicitation of local
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defense response in response to leaf-herbivory on tea leaves.
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Induction of genes related to depletion of systemic carbon reserves
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To investigate the balance between the secondary metabolism and the primary
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metabolism, the DEGs related to primary metabolism pathways were identified in
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local and systemic groups and further compared each other. We discovered that
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primary metabolism DEGs were disturbed in both two groups, but leaf-herbivory has
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a more notable impact on the primary metabolism in systemic group, such as
275
carbohydrate, lipid, amino acid and energy metabolism (Figure 1b). Especially,
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carbohydrate metabolism was the most heavily affected in systemic group, and the 5
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top subcategories were involved in the catabolism of carbohydrate, containing starch
278
and sucrose metabolism, glycolysis/gluconeogenesis, pentose phosphate pathway,
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citrate cycle and pyruvate metabolism (Figure 3). It indicated that leaf-herbivory
280
dramatically reduced carbon reserves in systemic response in tea plants, which may
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be much more reallocated and utilized to produce defensive secondary metabolites in
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local response.
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Different systemic signaling network comparing to local signaling
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network induced by leaf-herbivory
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The attacked plants firstly perceive insect herbivory, and then trigger elaborate
286
signaling networks, which then play pivotal roles to mediate defense-tolerance
287
trade-offs in plants. To investigate the signaling networks evoked by leaf-herbivory in
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tea plants, we dissected local and systemic gene expression profilings related to
289
herbivory-induced pattern-recognition receptors (PRRs), Ca2+ signaling, MAPK
290
signaling,
291
transcription factors. For herbivory-induced PRRs, we discovered that 7 out of 22
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local DEGs related to plasma membrane-localized receptor kinases (RKs) and all 5
293
systemic DEGs for leucine-rich repeat-containing receptor-like kinases (LRR-RLKs)
294
were up-regulated in local and systemic groups, respectively. Especially, 2 LRR-RLK
295
genes were more dramatically enhanced in the systemic group. For Ca2+ signaling,
296
genes encoding Ca2+ sensor proteins, such as calcium-binding protein (CBP),
297
calcium-transporting ATPase (Ca2+-ATPase), calmodulin (CAM), calcineurin B-like
298
protein (CBL), CBL-interacting protein (CBLI) and calcium-dependent protein kinase
299
(CDPK) were activated in local group, especially 4 highly up-regulated CBP and
300
Ca2+-ATPase genes. By comparison, 3 CBP genes and 2 CDPK genes in systemic
301
group were more dramatically enhanced. We found that 11 and 1 up-regulated MAPK
302
genes in local and systemic groups, respectively, suggesting MAPK signaling were
303
employed to exerted stronger effects to mediate the local response in response to tea
304
geometrid attack (Supplementary Figure S4a and Supplementary Table S5). For
305
combating oxidative stress, genes encoding glutathione reductases (GRs), glutathione
306
S-transferases (GSTs), L-ascorbic acid oxidases (ASOs), peroxidases (PODs) and
oxidative
stress-related
pathways,
phytohormone
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catalases (CATs) were commonly induced in both two groups, but GTD (glutaredoxin)
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genes in local group, and SOD (superoxide dismutase) and APX (ascorbate peroxidase)
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genes in systemic group were triggered, respectively. Notably, several CAT and ASO
310
genes were obviously enhanced in local group, whereas several GST, POD and SOD
311
genes were intensely activated to scavenge ROS in systemic group (Supplementary
312
Figure S4b and Supplementary Table S5).
313
Comparative transcriptome analysis further revealed complex transcriptional
314
profiling of phytohormone signaling networks triggered by leaf-herbivory in tea
315
plants, including a prominent activation of JA, ET, ABA and MeSA signaling in local
316
group and a positive induction of JA, ABA and IAA signaling in systemic group
317
(Figure 4 and Supplementary Table S5). JA pathway was overall activated in local
318
group comprising up-regulated genes encoding lipoxygenases (LOXs), allene oxide
319
synthases (AOSs), allene oxide cyclases (AOCs), 12-oxo-phytodienoic acid
320
reductases (OPRs), jasmonate O- methyltransferase (JMT), JA ZIM-domain (JAZ)
321
and MYC proteins. Several LOX, AOS and MYC genes were also enhanced in
322
systemic group. Similarly, genes for ET signaling were significantly activated in local
323
group, including genes encoding S-adenosyl-L-methionine synthases (ADSs),
324
1-aminocyclopropane-1-carboxylate
325
1-aminocyclopropane-1-carboxylate oxidases (ACOs) and ethylene responsive factors
326
(ERFs). By comparison, ACS, ACO and ERF genes were up-regulated with less
327
amplification in systemic group. No gene responsible for SA biosynthesis and
328
perception was activated in both two groups, but 1 SAMT gene encoding salicylic acid
329
carboxyl methyltransferase for the conversion of SA to MeSA was up-regulated in
330
local group. For ABA pathway, 7 obviously elevated genes of zexanthin epoxidases
331
(ZEPs) and 9-cis-epoxycarotenoid dioxygenases (NCEDs) were identified in local
synthases
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group. Although only 1 ZEP gene and 1 NCED gene were activated in systemic group,
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the ZEP gene was up-regulated ~4700 folds (Log2Ratio values of 12.3). IAA pathway
334
was more remarkably activated in systemic group than in local group, such as
335
significantly
336
flavin-containing monooxygenase), 2 TIR (encoding transport inhibitor response) and
337
1 ARF (auxin response factor) genes with Log2Ratio values of 4.5~12.7.
elevated
expression
levels
displayed
in
1
YUCCA
(YUC
338
In addition, we identified a large amount of DEGs encoding 15 and 11 types of
339
transcription factors (TFs) related to insect resistance in local and systemic groups,
340
respectively. Several TF genes in MYC, WRKY, AP2/ERF, NAC, MYB and bHLH
341
families were dramatically enhanced in local group comparing to slight up-regulation
342
in expression levels of these genes in systemic group (Supplementary Figure S4c and
343
Supplementary Table S5). We further discovered that different transcripts for most of
344
above mentioned genes were induced between local and systemic signaling networks.
345
In sum, leaf-herbivory elicited different local and systemic signaling networks as
346
mediators for launching local defense response and enhancing systemic resource
347
reallocation.
348
Dynamic expression patterns of candidate genes in local and systemic
349
responses using qRT-PCR
350
To further analyze the dynamic spatiotemporal transcription patterns of the induced
351
local and systemic responses, several DEGs, which contained LOX, ACO, SAMT and
352
MYC genes related to phytohormone signaling, GST, ASO and POD genes for
353
scavenging of ROS, and chitinase and TPS genes for resistance, were selected to
354
detect the dynamic expression levels in treatment and control leaf/root samples from 3
355
to 24 h after leaf-herbivory using qRT-PCR. Almost all the candidate genes were 16
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up-regulated in local and systemic group after leaf-herbivory, but relatively stronger
357
activations were observed in local group (Figure 5), which was consistent with the
358
changing tendency from comparative transcriptome analysis. Notably, LOX3 gene
359
exhibited the strongest local and systemic responses, peaking with ~80-fold local
360
up-regulation at 6 h after leaf-herbivory and ~20-fold systemic up-regulation at 9 h
361
after leaf-herbivory, respectively. The relative expression levels of LOX1, LOX3,
362
MYC2, SAMT, GST1, ASO1, POD1, Chitinase1 and TPS5 genes peaked in local group
363
at 3~6 h after leaf-herbivory, but most of them peaked in systemic group at 6~9 h
364
after leaf-herbivory. However, the relative expression levels of ACO1 gene
365
maximized at 12~24 h in local group but at 3~6 h in systemic group after
366
leaf-herbivory (Figure 5). Therefore, the dynamic expression profilings of leaf and
367
root in response to leaf-herbivory were not synchronous.
368
Furthermore, the dynamic expression changes of these genes were also
369
investigated in treatment and control leaf/root samples from 3 to 24 h after
370
leaf-mechanical damage and compared with those induced by leaf-herbivory.
371
Mechanical damage elicited both local and systemic responses at transcription level.
372
Almost all of the relative expression levels of LOX3, SAMT, GST1, Chitinase1 and
373
TPS5 genes at 3~24 h after mechanical damage were much higher in local group,
374
whereas ACO1, MYC2 and ASO1 genes were more remarkably activated in almost all
375
of the time course in systemic group. Among them, LOX3 gene exhibited the
376
strongest response and peaked with ~25-fold up-regulation at 9 h after mechanical
377
damage in local group, but ACO1 gene was the most heavily affected in systemic
378
group and peaked with ~50-fold up-regulation at 12 h after mechanical damage. In
379
addition, the relative expression levels of most candidate genes, such as LOX1, MYC2,
380
ACO1, GST1, ASO1, POD1, Chitinase1 and TPS5 genes, peaked at 3~6 h after 17
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mechanical damage in local group. However, the relative expression levels of LOX1,
382
LOX3, SAMT, POD1 and TPS5 genes peaked at 6~9 h after mechanical damage, and
383
MYC2, ACO1, GST1 and Chitinase1 genes reached the maximal expression at 12 h
384
after mechanical damage in systemic group (Figure 5). Therefore, the different
385
transcriptional reconfiguration of these candidate genes were also induced between
386
local and systemic groups by mechanical damage, and the local response also peaked
387
ahead of the systemic response after mechanical damage at transcriptional level.
388
However, the activated genes and the expression intensity were not identical between
389
the dynamic expression patterns of all candidate genes induced by leaf-herbivory with
390
those triggered by leaf-mechanical damage.
391
Root-mediated carbon dynamics induced by leaf-herbivory
392
To investigate the dynamic changes of carbohydrate metabolism in local and systemic
393
groups induced by leaf-herbivory on tea plants, several main carbohydrates and
394
organic acids, containing sucrose, D-fructose, D-glucose, citric acid and L-malic acid,
395
were evaluated using GC-MS method. Sucrose, one kind of disaccharide, is
396
decomposed into glucose and fructose in starch and sucrose metabolism pathway.
397
Leaf-herbivory elicited the significant declines of sucrose contents not only in local
398
group but also in systemic group. D-fructose is usually converted into intermediates
399
and involved into glycolysis pathway and fructose metabolism. D-fructose contents
400
were also significantly decreased in both local and systemic groups. D-glucose is one
401
kind of core hexose for glycolysis pathway and citrate cycle. D-glucose contents were
402
obviously consumed at 3~24 h in local group and at 12~24 h in systemic group after
403
leaf-herbivory. Citric acid and L-malic acid are the two organic acids in citrate cycle.
404
Their contents were markedly descended in systemic group whereas the contents of 18
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citric acid were not significantly changed in local group (Figure 6). Furthermore, the
406
depletion of all the 5 primary metabolites in systemic group exhibited a trend of
407
gradual increase. As mentioned above, the remarkably transcriptional activation of the
408
catabolism of carbohydrate, containing starch and sucrose metabolism, glycolysis,
409
citrate cycle and fructose metabolism, were discovered in systemic group. However,
410
starch and sucrose metabolism, glycolysis and fructose metabolism were obviously
411
activated in local group except for citrate cycle (Figure 3). The results demonstrated
412
that the metabolic changes of the investigated carbohydrates and organic acids were
413
consistent with the transcriptional impact induced by leaf-herbivory.
414
Differential impact of leaf-herbivory on local and systemic
415
phytohormone levels
416
To further investigate the responsive phytohormones induced by leaf-herbivory, the
417
contents of JA, JA-Ile, SA and ABA were determined in CKL, EL, CKR and ER
418
samples from 3 h to 24 h after leaf-herbivory using HPLC-triple Quadrupole Mass
419
analysis (Figure 7). Leaf-herbivory exerted the strongest effect on JA levels, which
420
were prominently elevated in almost the entire time course in both EL and ER
421
samples than the controls. Comparing to the respective controls, JA levels in EL
422
sample rapidly increased and peaked (~890 ng·g-1 fresh weight, ng·g-1 FW) at 9 h after
423
leaf-herbivory, but JA levels in ER sample promptly enhanced and peaked (~600
424
ng·g-1 FW) at 3 h after leaf-herbivory. Similarly, JA-Ile levels were induced to elevate
425
in damaged leaves in all of the time course, and they were also fastly increased to the
426
maximum at 3 h after leaf-herbivory in undamaged roots. Completely different with
427
the dynamic accumulation of JA and JA-Ile, SA levels were induced to overall decline
428
in the time course in both local and systemic groups, and the bigger decreasing 19
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amplitude in systemic group was found. ABA levels were induced to change in a
430
pattern of ′decreasing-increasing-decreasing′ and reach the highest level at 9 h after
431
leaf-herbivory in local group, whereas they were triggered to vary in a gradual and
432
continuous increasing pattern and peak at 6 h after leaf-herbivory in systemic group.
433
The results exhibited that all the investigated phytohormones were disturbed in
434
specific patterns by leaf-herbivory, and the levels of the same phytohormone were
435
also triggered to alter in the different modes between local and systemic groups. The
436
changes of JA, JA-Ile, SA and ABA at metabolic level were consistent with the
437
expression changes of genes related to their signaling pathways at transcriptional
438
level.
439
DISCUSSION
440
In this study, using transcriptomic and phytochemical analysis, we compared the local
441
and systemic responses and the related phytohormone signaling triggered by tea
442
geometrids attack on leaves of tea plants, and investigated the potential role of roots
443
in response to leaf-herbivory. Comparative transcriptome analysis demonstrated the
444
occurrence of tissue-specific transcriptome reconfiguration involved in perception of
445
stimuli, signal transduction, metabolism and defense between aboveground and
446
belowground after leaf-herbivory in tea plants. Dynamic expression pattern analysis
447
supported this discovery, and further suggested the time course of leaf and root
448
responses were not synchronous. Our results were consistent with the previous studies
449
in maize, cabbage and tobacco.15-18 Therefore, in response to leaf-herbivory, not only
450
herbaceous plants but also woody plants reprogramme their transcriptomes in order to
451
reconfigure their physiologies in both aboveground and belowground tissues for
452
adaptation of environmental stimuli. In addition, inducements of insect herbivory 20
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usually contain chemical elicitor from the oral secretion and mechanical damage from
454
chewing of herbivores. By comparison of the dynamic expression patterns of
455
candidate genes, we observed that both local and systemic responses were induced by
456
leaf-herbivory and mechanical damage, and the induced systemic responses basically
457
appeared later than the induced local responses after the two treatments. However, the
458
activated genes and the expression intensity in both local and systemic groups were
459
not identical between leaf-herbivory and mechanical damage treatments. Our analysis
460
confirmed that the dynamic expression patterns of the candidate genes induced by
461
leaf-herbivory and mechanical damage was different. It suggested the effect from
462
leaf-herbivory by geometrids was not only caused by mechanical damage, chemical
463
elicitor can be another important inducement for the generation of local and systemic
464
responses of tea plants. The effects on tea plants of chemical elicitor and mechanical
465
damage should be further investigated and compared in the future to deeply
466
comprehend their different mechanisms.
467
Local defense response in damaged tea leaves induced by geometrid attack has
468
been detailed studied, and the enhancement of the biosynthesis of secondary
469
metabolites has been testified at transcriptional and metabolic levels. Our and Wang’s
470
previous work elucidated that secondary metabolism play important roles for local
471
defense response induced by geometrid attack at transcriptome level.28, 29 Cai et al.
472
revealed that geometrid attack induced the generation of abundant volatiles containing
473
a large amount of terpenoids and GLVs from the attacked tea leaves.30 Recently,
474
Wang et al. provided further metabolomic evidence that a plethora of secondary
475
metabolites, such as flavonoids, involved in defense against tea geometrids could be
476
significantly induced in damaged tea leaves.31 However, we have hardly known the
477
mechanism of resource investment for secondary metabolism in tea plants under 21
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heavy herbivory before this work. Here, a deep comprehension of the inducible
479
defense against tea geometrid attack was acquired from the perspective of systems
480
biology for the first time. By deciphering the responsive transcriptome profiling of
481
primary and secondary metabolism, the activation of a large scale of genes for the
482
biosynthesis of secondary metabolites was also observed, which was consistent with
483
the above mentioned previous work. However, secondary metabolism was uniquely
484
activated in local response but not in systemic response, whereas a mass of activated
485
primary metabolism genes were enriched in the catabolism of local and systemic
486
carbohydrates, especially in more significant depletion of systemic carbon reserves.
487
Carbohydrate dynamics analysis further provided evidence that leaf-herbivory can
488
significantly reduce nonstructural carbohydrates not only in damaged leaves but also
489
in undamaged roots, supporting that the potential role of root was as a resource
490
mediator to improve the deployment of carbon reserves for more effective leaf
491
defense. It indicated that tea plants employed a root-mediated resource-based
492
resistance strategy in response to leaf-herbivory. Similarly, some studies reported that
493
more resources were imported into attacked leaves to support plant defenses.10, 11, 39-41
494
On the contrary, some attacked plants may employ herbivory-induced resource
495
sequestration strategy to increase carbon transport from damaged leaves to the roots
496
for reinforce of plant tolerance and regrowth capacity.8, 41-43 Recent studies reported
497
that some herbivore-attacked plants have evolved mixed tolerance-defense strategies
498
to spatially and temporally resist diverse herbivore attackers.44-47 Therefore, different
499
plant species may adopt different strategies for tolerance-defense trade-offs against
500
herbivore stress. In the future, the carbon reallocation and reutilization should be
501
further investigated for deep understanding of the mechanism of tolerance-resistance
502
trade-offs in tea plants. 22
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In the present study, both local and systemic responses were activated by E.
504
oblique attack on leaves of tea plants via intricate tissue-specific signaling networks,
505
which was supported by evidence from comparative transcriptome analysis,
506
phytohormone
507
phytohormone-related genes. We identified a large amount of activated genes
508
involved in perception of herbivore elicitors, Ca2+ signaling, MAPK signaling, ROS
509
elimination, phytohormone signaling and activation of TFs, but there was hardly little
510
overlap of gene transcripts between local and systemic groups. JA was identified as a
511
crucial phytohormone for mediating local and systemic responses against
512
leaf-herbivory due to a remarkable elevation on JA levels and the expression levels of
513
the key LOX genes involved in JA biosynthesis in local and systemic groups. This
514
result was consistent with many studies of plant-herbivore interactions.4, 9, 10, 14, 16, 21, 48
515
In addition, we found that LOX genes peaked at 3~6 h after herbivory, and JA level
516
peaked at 9 h after herbivory in attacked leaves. Notably, LOX genes peaked 6~9 h
517
after herbivory, but JA level peaked at 3 h after herbivory in unattacked roots. It
518
indicates that E. oblique attack triggers not only local JA accumulation from de novo
519
biosynthesis, but also a putatively mixed pattern of systemic JA accumulation
520
containing de novo biosynthesis of JA and JA transport from leaves to roots,
521
suggesting JA as a long-distance signal to initiate root systemic response.
quantification
and
dynamic
expression
analysis
of
522
In spite of JA signaling, several other phytohormones were discovered to
523
participate in the induced local and systemic signaling networks. Transcriptional
524
activation of ET signaling pathway exhibited stronger in local leaves, which was
525
different from the induction of ET signaling in maize roots by leaf-herbivory.16 The
526
activation of ACO gene appeared latter than that of LOX and MYC genes and the
527
increasing of JA, suggesting that the induced JA signaling may promote de novo 23
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528
biosynthesis of ET in damaged leaves. The suppression of SA were opposite to the
529
activation of JA or ET in both local and systemic signaling networks, which may be
530
explained by antagonistic interplay of JA/ET-SA that is generally conserved among
531
various monocot and eudicot species.49 ABA has been identified as a
532
herbivore-triggered systemic signal to induce root-to-leaf defense response in maize
533
plants.50 Here, although the local and systemic activation of ABA signaling genes
534
were elicited, but ABA levels were basically suppressed in local group and were
535
elevated in systemic group. We speculate ABA may be a putative leaf-to-root signal.
536
ABA biosynthesis in damaged leaves and the subsequent transport to roots may be
537
induced by leaf-herbivory, and de novo biosynthesis of ABA in roots also occurred. A
538
predominant activation of IAA biosynthesis and perception pathway in systemic
539
group suggested that IAA signaling were required for the induced systemic responses.
540
Machado et al. recently reported that auxin was rapidly induced by herbivory and
541
regulated a subset of systemic, jasmonate-dependent defenses in roots.10, 24 However,
542
the occurring time of systemic auxin signaling and the crosstalk interactions of IAA
543
with JA or ABA in tea plants need further research.
544
In this study, leaf-herbivory by E. oblique attack triggered differential
545
transcriptome reconfiguration between local and systemic responses in tea plants.
546
Comparative transcriptome analysis and carbohydrate dynamics analysis revealed that
547
a root-mediated resource-based resistance strategy was employed by tea plants in
548
response to leaf-herbivory. Phytohormone quantification and dynamic expression
549
analysis of phytohormone-related genes demonstrated the crucial role of JA and the
550
involvement of JA, ET and ABA in local signaling networks but JA, ABA and IAA in
551
systemic signaling networks (Table of Contents Graphic). This work provides new
552
insights into the intricate molecular mechanisms of leaf-to-root communication acting 24
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as the mediators of induced local and systemic responses against leaf-herbivory, and
554
helps to extend our knowledge of the inducible defense strategies employed in tea
555
plants from the perspective of systems biology.
556
ABBREVIATIONS USED
557
ACO,
558
1-aminocyclopropane-1-carboxylate
559
synthase; AOC, allene oxide cyclase; AOS, allene oxide synthase; ARF, auxin
560
response factor; ASO, L-ascorbic acid oxidase; APX, ascorbate peroxidase; BSTFA,
561
N, O-Bis-(trimethylsilyl)-trifluoroacetamide; LOX, lipoxygenase; Ca2+-ATPase,
562
calcium-transporting ATPase; CAT, catalase;
563
B-like protein; CBLI, CBL-interacting protein; CBP, calcium-binding protein; CDPK,
564
calcium-dependent protein kinase; COG, orthologous group; CS, cellulose synthase;
565
DEG, differentially expressed gene; ET, ethylene; ERF, ethylene responsive factor;
566
FDR, false discovery rate; FPKM, fragments per kilobase of exon model per million
567
mapped reads; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; GLV, green
568
leaf volatile; GO, Gene ontology; GR, glutathione reductase; GST, glutathione
569
S-transferase;
570
receptor-like kinase; MAPK, mitogen-activated protein kinase; MRP, multidrug
571
resistance protein; NCED, 9-cis-epoxycarotenoid dioxygenase; JA, jasmonic acid;
572
JAZ,
573
12-oxo-phytodienoic acid reductase; PI, protease inhibitor; PPO, polyphenol oxidase;
574
POD, peroxidase; PR, pathogenesis-related protein; PRR, pattern-recognition receptor;
1-aminocyclopropane-1-carboxylate
JA
GTD,
glutaredoxin;
ZIM-domain;
JMT,
synthase;
oxidase;
ADS,
ACS,
S-adenosyl-L-methionine
CAM, calmodulin; CBL, calcineurin
LRR-RLK,
jasmonate
leucine-rich
O-
25
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repeat-containing
methyltransferase;
OPR,
Journal of Agricultural and Food Chemistry
575
RK, receptor kinase; ROS, reactive oxygen species; SA, salicylic acid; SAMT,
576
salicylic acid carboxyl methyltransferase; SOD, superoxide dismutase; TF,
577
transcription factor; TMCS, trimethylchlorosilane; TIR, transport inhibitor response;
578
XTH, xyloglucan endotransglucosylase/hydrolase; YUCCA, YUC flavin-containing
579
monooxygenase; ZEP, zexanthin epoxidase; β-Gluc, β-1,3-glucanase.
580
FUNDING
581
This work received financial supports from the National Natural Science Foundation
582
of China (31300578), the National Key Research and Development Program of China
583
(2018YFD1000601), the project of the Youth Elite Supporting Plan in Universities of
584
Anhui Province (gxyq2018003) and the Doctoral Science Foundation of Anhui
585
Agricultural University (wd2016-02). These funders had no role in study design, data
586
collection and analysis, decision to publish, or preparation of the manuscript.
587
AUTHORS' CONTRIBUTIONS
588
CLW and HY conceived and designed the experimental plan. HY, YNW and LBL
589
participated in sample collection and experiments. JQW performed the analysis of
590
phytohormones. HY, YNW, FDL and YXH analyzed and interpreted the sequence
591
data. HY and YNW drafted the manuscript. HY, JQW and CLW revised the
592
manuscript.
593
CONFLICT OF INTEREST
594
The authors declare that they have no conflict of interest.
595
SUPPORTING INFORMATION 26
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Availability of supporting data
597
The Illumina RNA-Seq data generated from damaged leaves and undamaged roots
598
from tea plants (C. sinensis) attacked by E. oblique and the control leaves and roots
599
are available in the NCBI SRA (http://trace.ncbi.nlm.nih.gov/Traces/sra) with
600
accessions SRR7758794–SRR7758804. Additional supporting information may be
601
found in the online version of this article.
602
Supplementary Figure S1. Characterization of homology search of the assembled C.
603
sinensis unigenes against the NR database. (a) The E-value distribution of the
604
alignment results of C. sinensis unigenes. (b) The similarity distribution of the
605
alignment results of C. sinensis unigenes. (c) The species distribution of the alignment
606
results of C. sinensis unigenes.
607
Supplementary Figure S2. Histogram presentation of clusters of orthologous group
608
(COG) classification of C. sinensis unigenes.
609
Supplementary Figure S3. Gene Ontology classification of C. sinensis transcriptome.
610
Gene Ontology (GO) terms are summarized in three main categories: biological
611
process, cellular component and molecular function. The left and right Y-axes in log
612
scale indicate the percentage and the number of genes within a certain GO category,
613
respectively.
614
Supplementary Figure S4. DEGs related to protein kinase, Ca2+ signaling, ROS
615
pathway and related TFs in the local and systemic signaling networks elicited by
616
leaf-herbivore attack on tea plants. (a) DEGs related to pattern-recognition receptors, and
617
involved in Ca2+ signaling and MAPK signaling pathways. (b) DEGs involved in
618
oxidative stress-related pathways. (c) DEGs related to transcription factors (TFs). The
27
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619
numbers of the induced genes in leaves and roots by leaf-herbivory were indicated in
620
numerals above and below the X-axes, respectively.
621
Supplementary Table S1. Primers of the candidate unigenes designed for qRT-PCR.
622
Supplementary Table S2. Summary of RNA-Seq outputs for the twelve libraries.
623
Supplementary Table S3. Length distributions of assembled contigs and unigenes from
624
each library of C. sinensis.
625
Supplementary Table S4. The significantly enriched KEGG pathway annotated in the C.
626
sinensis reference transcriptome.
627
Supplementary Table S5. Differentially expressed genes involved in signaling, ROS,
628
TFs and defense response pathways in leaves and roots in response to E. oblique attack
629
on leaves of tea plants.
28
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where it hurts: root and shoot jasmonic acid induction elicit differential responses in Brassica oleracea. PLoS One 2013, 8, e65502. (18) Gulati, J.; Baldwin, I. T.; Gaquerel, E. The roots of plant defenses: integrative multivariate analyses uncover dynamic behaviors of gene and metabolic networks of roots elicited by leaf herbivory. Plant J. 2014, 77, 880-892. (19) Erb, M.; Meldau, S.; Howe, G. A. Role of phytohormones in insect-specific plant reactions. Trends Plant Sci. 2012, 17, 250-259. (20) Campos, M. L.; Kang, J. H.; Howe, G. A. Jasmonate-triggered plant immunity. J. Chem. Ecol. 2014, 40, 657-675. (21) Fragoso, V.; Rothe, E.; Baldwin, I. T.; Kim, S. G. Root jasmonic acid synthesis and perception regulate folivore-induced shoot metabolites and increase Nicotiana attenuata resistance. New Phytol. 2014, 202, 1335-1345. (22) Howe, G. A.; Jander, G. Plant immunity to insect herbivores. Annu. Rev. Plant Biol. 2008, 59, 41-66. (23) Berens, M. L.; Berry, H. M.; Mine, A.; Argueso, C. T.; Tsuda, K. Evolution of Hormone Signaling Networks in Plant Defense. Annu. Rev. Phytopathol. 2017, 55, 401-425. (24) Machado, R. A.; Robert, C. A.; Arce, C. C.; Ferrieri, A. P.; Xu, S.; Jimenez-Aleman, G. H.; Baldwin, I. T.; Erb, M. Auxin is rapidly induced by herbivore attack and regulates a subset of systemic, jasmonate-dependent defenses. Plant Physiol. 2016, 172, 521-532. (25) Yang, J. W.; Yi, H.-S.; Kim, H.; Lee, B.; Lee, S.; Ghim, S.-Y.; Ryu, C.-M. Whitefly infestation of pepper plants elicits defence responses against bacterial pathogens in leaves and roots and changes the below-ground microflora. Journal of Ecology 2011, 99, 46-56. (26) Wei, C.; Yang, H.; Wang, S.; Zhao, J.; Liu, C.; Gao, L.; Xia, E.; Lu, Y.; Tai, Y.; She, G.; Sun, J.; Cao, H.; Tong, W.; Gao, Q.; Li, Y.; Deng, W.; Jiang, X.; Wang, W.; Chen, Q.; Zhang, S.; Li, H.; Wu, J.; Wang, P.; Li, P.; Shi, C.; Zheng, F.; Jian, J.; Huang, B.; Shan, D.; Shi, M.; Fang, C.; Yue, Y.; Li, F.; Li, D.; Wei, S.; Han, B.; Jiang, C.; Yin, Y.; Xia, T.; Zhang, Z.; Bennetzen, J. L.; Zhao, S.; Wan, X. Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality. Proceedings of the National Academy of Sciences of the United States of America 2018, 115, E4151-E4158. (27) Shi, C. Y.; Yang, H.; Wei, C. L.; Yu, O.; Zhang, Z. Z.; Jiang, C. J.; Sun, J.; Li, Y. Y.; Chen, Q.; Xia, T.; Wan, X. C. Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC genomics 2011, 12, 131. (28) Wang, Y. N.; Tang, L.; Hou, Y.; Wang, P.; Yang, H.; Wei, C. L. Differential transcriptome analysis of leaves of tea plant (Camellia sinensis) provides comprehensive insights into the defense responses to Ectropis oblique attack using RNA-Seq. Functional & integrative genomics 2016, 16, 383-98. (29) Wang, D.; Li, C. F.; Ma, C. L.; Chen, L. Novel insights into the molecular mechanisms underlying the resistance of Camellia sinensis to Ectropis oblique provided by strategic transcriptomic comparisons. Scientia Horticulturae 2015, 192, 429-440. (30) Cai, X. M.; Sun, X. L.; Dong, W. X.; Wang, G. C.; Chen, Z. M. Herbivore species, infestation time, and herbivore density affect induced volatiles in tea plants. Chemoecology 2013, 24, 1-14. 30
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(31) Wang, W. W.; Zheng, C.; Hao, W. J.; Ma, C. L.; Ma, J. Q.; Ni, D. J.; Chen, L. Transcriptome and metabolome analysis reveal candidate genes and biochemicals involved in tea geometrid defense in Camellia sinensis. PLoS One 2018, 13, e0201670. (32) Tai, Y.; Wei, C.; Yang, H.; Zhang, L.; Chen, Q.; Deng, W.; Wei, S.; Zhang, J.; Fang, C.; Ho, C.; Wan, X. Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera). BMC Plant Biol. 2015, 15, 190. (33) Grabherr, M. G.; Haas, B. J.; Yassour, M.; Levin, J. Z.; Thompson, D. A.; Amit, I.; Adiconis, X.; Fan, L.; Raychowdhury, R.; Zeng, Q.; Chen, Z.; Mauceli, E.; Hacohen, N.; Gnirke, A.; Rhind, N.; di Palma, F.; Birren, B. W.; Nusbaum, C.; Lindblad-Toh, K.; Friedman, N.; Regev, A. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature biotechnology 2011, 29, 644-52. (34) Tatusov, R. L.; Natale, D. A.; Garkavtsev, I. V.; Tatusova, T. A.; Shankavaram, U. T.; Rao, B. S.; Kiryutin, B.; Galperin, M. Y.; Fedorova, N. D.; Koonin, E. V. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic acids research 2001, 29, 22-8. (35) Trapnell, C.; Pachter, L.; Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25, 1105-11. (36) Wang, L.; Feng, Z.; Wang, X.; Wang, X.; Zhang, X. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 2010, 26, 136-8. (37) Zhang, J.; Wang, X.; Yu, O.; Tang, J.; Gu, X.; Wan, X.; Fang, C. Metabolic profiling of strawberry (Fragaria x ananassa Duch.) during fruit development and maturation. Journal of experimental botany 2011, 62, 1103-18. (38) Livak, K. J.; Schmittgen, T. D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25, 402-8. (39) Shoji, T.; Yamada, Y.; Hashimoto, T. Jasmonate induction of putrescine N-methyltransferase genes in the root of Nicotiana sylvestris. Plant & cell physiology 2000, 41, 831-839. (40) Arnold, T.; Appel, H.; Patel, V.; Stocum, E.; Kavalier, A.; Schultz, J. Carbohydrate translocation determines the phenolic content of Populus foliage: a test of the sink-source model of plant defense. New Phytol. 2004, 164, 157-164. (41) Ferrieri, A. P.; Agtuca, B.; Appel, H. M.; Ferrieri, R. A.; Schultz, J. C. Temporal changes in allocation and partitioning of new carbon as 11C elicited by simulated herbivory suggest that roots shape aboveground responses in Arabidopsis. Plant Physiol. 2013, 161, 692-704. (42) Briske, D. D.; Boutton, T. W.; Wang, Z. Contribution of flexible allocation priorities to herbivory tolerance in C4 perennial grasses: an evaluation with (13)C labeling. Oecologia 1996, 105, 151-159. (43) Babst, B. A.; Ferrieri, R. A.; Thorpe, M. R.; Orians, C. M. Lymantria dispar herbivory induces rapid changes in carbon transport and partitioning in Populus nigra. Entomol. Exp. Appl. 2008, 128, 117-125. (44) Leimu, R.; Koricheva, J. A meta-analysis of tradeoffs between plant tolerance and resistance to herbivores: combining the evidence from ecological and agricultural studies. Oikos 2006, 12, 1-9. (45) Núñez-Farfán, J.; Fornoni, J.; Valverde, P. L. The Evolution of Resistance and Tolerance to Herbivores. Annu. Rev. Ecol. Evol. Syst. 2007, 38, 541-566. 31
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(46) Carmona, D.; Fornoni, J. Herbivores can select for mixed defensive strategies in plants. New Phytol. 2013, 197, 576-585. (47) Karinho-Betancourt, E.; Nunez-Farfan, J. Evolution of resistance and tolerance to herbivores: testing the trade-off hypothesis. PeerJ 2015, 3, e789. (48) Baldwin, I. T.; Zhang, Z. P. Transport of [2- 14C] jasmonic acid from leaves to roots mimics wound-induced changes in endogenous jasmonic acid pools in Nicotiana sylvestris. Planta 1997, 203, 436-441. (49) Shigenaga, A. M.; Berens, M. L.; Tsuda, K.; Argueso, C. T. Towards engineering of hormonal crosstalk in plant immunity. Curr. Opin. Plant Biol. 2017, 38, 164-172. (50) Erb, M.; Kollner, T. G.; Degenhardt, J.; Zwahlen, C.; Hibbard, B. E.; Turlings, T. C. The role of abscisic acid and water stress in root herbivore-induced leaf resistance. New Phytol. 2011, 189, 308-20.
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FIGURE CAPTIONS
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Figure 1. Comparative analysis of local and systemic transcriptomes induced by
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E. oblique attack on leaves of tea plants.
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(a) The Venn diagram of the induced DEGs in local group (EL-vs-CKL) and systemic
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group (ER-vs-CKR). Red and blue arrows indicate up-regulated and down-regulated
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DEGs, respectively. (b) Comparison of the enrichment of KEGG pathways of DEGs
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in local and systemic groups.
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Figure 2. Differential transcriptional profiling of local and systemic defense
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responses triggered by leaf-herbivore attack on tea plants.
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(a) Phenylpropanoid pathway. (b) Flavonoid biosynthesis. (c) Biosynthesis of H
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lignins. (d) Caffeine biosynthesis. (e) Terpenoid biosynthesis. (f) GLV biosynthesis.
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(g) Cell wall remodeling and generation of resistant proteins. Expression data are
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plotted as Log2 values.
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Figure 3. The transcriptional impact on carbohydrate metabolism in local and
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systemic groups triggered by leaf-herbivore attack on tea plants.
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(a) The transcriptional impact on the subcategories involved in local carbohydrate
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metabolism. (b) The transcriptional impact on the subcategories involved in systemic
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carbohydrate metabolism. The colorized dots represent the subcategories involved in
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carbohydrate metabolism. The X-axes indicate the number of up-regulated DEGs
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related to the certain subcategory of carbohydrate metabolism. The Y-axes indicate
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the significance of the DEGs related to the certain subcategory of carbohydrate
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metabolism, which are plotted as -Lg (P-value) values.
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Figure 4. Differential transcriptional profiling of the local and systemic
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phytohormone signaling networks elicited by leaf-herbivore attack on tea plants. 33
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The investigated phytohormone signaling networks contained JA, ET, SA, ABA and
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auxin signaling pathways. Expression data are plotted as Log2 values.
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Figure 5. The dynamic expression patterns of candidate genes involved in
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phytohormone signaling, oxidative stress-related pathway and defense response.
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The dynamic expression levels of the candidate genes in damaged leaves and undamaged
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roots were analyzed at 3~24 h after leaf-herbivory or mechanical damage using qRT-PCR.
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(a, b) LOX1, lipoxygenase 1. (c, d) LOX3, lipoxygenase 3. (e, f) MYC2, MYC
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transcription factor 2. (g, h) SAMT, salicylic acid carboxyl methyltransferase. (i, j) ACO1,
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1-aminocyclopropane-1-carboxylate oxidase 1. (k, l) GST1, glutathione s-transferase 1.
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(m, n) ASO1, L-ascorbate oxidase 1. (o, p) POD1, peroxidase 1. (q, r) Chitinase1. (s, t)
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TPS5, terpene synthase 5. All the candidate genes were analyzed in leaf and root samples
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treated by leaf-herbivory and mechanical damage and the control samples. GAPDH was
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used as internal control. The expression of the genes in control samples was set to 1.0.
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Different letters mean significant difference (P < 0.05) between local and systemic
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groups at the same time point after leaf-herbivory.
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Figure 6. Quantitative analysis of the contents of main carbohydrates and
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organic acids induced by E. oblique attack on leaves of tea plants.
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The detected carbohydrates and organic acids contained sucrose, fructose, glucose,
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citric acid and L-malic acid. Different letters mean significant difference (P < 0.05)
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between treatment and control samples in the local group or the systemic group.
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Figure 7. Quantitative analysis of the variations of phytohormone contents
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induced by E. oblique attack on leaves of tea plants.
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The detected phytohormones contained ABA, JA, JA-Ile, and SA. Different letters
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mean significant difference (P < 0.05) between treatment and control samples.
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Table
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root-mediated resource-based resistance mechanism employed by tea plant in
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response to leaf-herbivory by E. oblique.
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