Subscriber access provided by UNIV OF NEW ENGLAND ARMIDALE
The effects of baicalein on cortical pro-inflammatory cytokines and the intestinal microbiome in senescence accelerated mouse prone 8 Li Gao, Jia-Qi Li, Yu-Zhi Zhou, Xudong Huang, Xue-mei Qin, and Guan-Hua Du ACS Chem. Neurosci., Just Accepted Manuscript • DOI: 10.1021/acschemneuro.8b00074 • Publication Date (Web): 18 Apr 2018 Downloaded from http://pubs.acs.org on April 19, 2018
Just Accepted “Just Accepted” manuscripts have been peer-reviewed and accepted for publication. They are posted online prior to technical editing, formatting for publication and author proofing. The American Chemical Society provides “Just Accepted” as a service to the research community to expedite the dissemination of scientific material as soon as possible after acceptance. “Just Accepted” manuscripts appear in full in PDF format accompanied by an HTML abstract. “Just Accepted” manuscripts have been fully peer reviewed, but should not be considered the official version of record. They are citable by the Digital Object Identifier (DOI®). “Just Accepted” is an optional service offered to authors. Therefore, the “Just Accepted” Web site may not include all articles that will be published in the journal. After a manuscript is technically edited and formatted, it will be removed from the “Just Accepted” Web site and published as an ASAP article. Note that technical editing may introduce minor changes to the manuscript text and/or graphics which could affect content, and all legal disclaimers and ethical guidelines that apply to the journal pertain. ACS cannot be held responsible for errors or consequences arising from the use of information contained in these “Just Accepted” manuscripts.
is published by the American Chemical Society. 1155 Sixteenth Street N.W., Washington, DC 20036 Published by American Chemical Society. Copyright © American Chemical Society. However, no copyright claim is made to original U.S. Government works, or works produced by employees of any Commonwealth realm Crown government in the course of their duties.
Page 1 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
1
The effects of baicalein on cortical pro-inflammatory cytokines and
2
the intestinal microbiome in senescence accelerated mouse prone 8
3
Li Gao†1*, Jiaqi Li†1,2, Yuzhi Zhou1, Xudong Huang3, Xuemei Qin1*, Guanhua Du1,4 1
4
Modern Research Center for Traditional Chinese Medicine, Shanxi University, Taiyuan 030006, PR China;
5
6
2
College of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, PR China;
7 3
8
Hospital and Harvard Medical School, Boston, MA, USA.
9
10 11
Neurochemistry Laboratory, Department of Psychiatry, Massachusetts General
4
Institute of Materia Medica, Peking Union Medical College & Chinese Academy of Medical Sciences, Beijing 100050, PR China.
12 13 14 15 16
* Corresponding authors
17
†These authors contributed equally to this work
18
Li Gao* (E-mail:
[email protected]); Tel & Fax: 86-351-7018379; Address: No.92
19
Wu Cheng Road, Taiyuan 030006, China
20
Xuemei Qin* (E-mail:
[email protected]); Tel & Fax: 86-351-7011501; Address:
21
No.92 Wu Cheng Road, Taiyuan 030006 China 1
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
22
Abstract
23
Baicalein, a flavonoid derived from the roots of Scutellariae baicalensis Georgi, has
24
shown health benefits for an array of human diseases including dementia. The
25
senescence-accelerated mouse prone 8 (SAMP8) strain is extensively used as a senile
26
dementia model. To further investigate the effects of baicalein in SAMP8 mice,
27
behavioral testing, biochemical detection and gut microbiota analysis were performed.
28
The results demonstrated that treatment with baicalein ameliorated the senescence
29
status of the SAMP8 mice, as manifested by reducing the grading score of senescence.
30
Additionally, baicalein improved the cognitive functions of the SAMP8 mice,
31
including spatial learning and memory abilities, object recognition memory and
32
olfactory memory. Furthermore, baicalein significantly inhibited the release of
33
pro-inflammatory cytokines such as interleukin-6 (IL-6), interleukin-1 beta (IL-1β),
34
and tumor necrosis factor-α (TNF-α) in the brain cortex of SAMP8 mice. Gut
35
microbiota analysis revealed that treatment with baicalein markedly altered the
36
abundance of 6 genera in SAMP8 mice. Correlation analysis indicated that the
37
abundances of Mucispirillum, Bacteroides and Sutterella were negatively correlated
38
with cognitive abilities and that Christensenellaceae was positively correlated with
39
cognition. Furthermore, the abundance of Christensenellaceae was negatively
40
correlated with the levels of IL-6 and TNF-α, while [Prevotella] was positively
41
correlated with the levels of IL-1β and IL-6. In addition, Mucispirillum and
42
Bacteroides were positively correlated with the levels of IL-6 in the brain cortex.
43
These data indicated that baicalein ameliorates senescence status and improves 2
ACS Paragon Plus Environment
Page 2 of 40
Page 3 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
44
cognitive function in SAMP8 mice and that this effect might be attributable to
45
suppression of cortical pro-inflammatory cytokines and modulation of the intestinal
46
microbiome.
47
Keywords: baicalein, aging, learning and memory, SAMP8 mice, cytokines,
48
intestinal microbiome
49
Introduction
50
Aging is a polygenic, multifactorial, and complex pathological process accompanied
51
by the deterioration of multiple organ systems. Central nervous system (CNS)
52
dysfunction due to aging has become one of the greatest threats to the health of the
53
elderly, and cognitive functional decline is extremely common at an advanced age (1).
54
Generally, brain aging can lead to systemic damage by triggering hormonal
55
dyshomeostasis and then establish a vicious pathophysiological cycle, indicating that
56
the CNS plays a central regulatory role in aging (2, 3).
57
Immunosenescence is a suspected factor in aging. Immunosenescence, an
58
imbalance of pro-inflammatory and anti-inflammatory function, triggers a low grade
59
chronic inflammatory status (4). Recent studies have advanced our understanding that
60
inflammation is strongly linked to the changes in intestinal flora during the aging
61
process. With the development of metagenomics, the role of intestinal flora has been
62
gradually investigated over recent years. Accumulated evidence has shown that a
63
healthy intestinal flora plays an important role in maintaining a healthy body,
64
including participation in nutrition metabolism, regulation of immunity, resistance to
65
pathogenic strains, and regulation of the gut-brain axis. 3
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
66
Notably, the structure and function of intestinal flora are gradually transformed
67
during the aging process and even produce side effects in the host, such as increasing
68
blood glucose levels (5) and affecting the absorption of certain amino acids (6).
69
Furthermore, senescence-related changes in intestinal bacteria can increase intestinal
70
permeability and release pro-inflammatory products into the bloodstream, eventually
71
increasing the level of inflammation (7-9).
72
Baicalein is a flavonoid derived from the roots of Scutellariae baicalensis Georgi.
73
Baicalein is known for its various pharmacological effects, such as antioxidant,
74
anti-inflammatory, and antitumor effects. In previous research, our group found that
75
baicalein extended longevity by attenuating oxidative stress in Drosophila
76
melanogaster (10) and ameliorated memory deficits by reducing inflammation and
77
metabolic dysfunction in D‐galactose-induced aging rats (11). In addition, the results
78
from other studies showed that baicalein significantly improved cognition by
79
facilitating the induction of hippocampal long-term potentiation (LTP) in SD rats (12)
80
or intensifying synaptic plasticity in APP/PS1 mice (13). However, the mechanisms
81
underlying the neuroprotective effect of baicalein have not been fully explored.
82
The senescence-accelerated mouse (SAM) is an accelerated aging model that
83
was established from AKR/J inbred strains of mice. The SAM was divided into
84
senescence-accelerated-prone mice (SAM-P) and senescence-accelerated-resistant
85
mice (SAM-R) subtypes based on the degree of senescence, the lifespan, and the
86
age-associated pathologic phenotypes (14). Senescence accelerated mouse prone 8
87
(SAMP8) is currently the ideal model for neurodegeneration and dementia research 4
ACS Paragon Plus Environment
Page 4 of 40
Page 5 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
88
with comprehensive brain pathological changes, including cortical atrophy, neuronal
89
cell loss, gliosis, and vascular impairment, starting at a young age (15). Moreover,
90
these changes are spontaneous and nontransgenic, which is a great advantage when
91
studying aging cognitive impairment. Senescence accelerated mouse resistant 1
92
(SAMR1) is commonly used as a normal control.
93
In the present work, the effects of baicalein on senescence status and hypomnesis
94
were evaluated in SAMP8 mice by examining the levels of cortical pro-inflammatory
95
cytokines and intestinal microbial flora in mice. Herein, we are the first to report the
96
ameliorative and modulating effects of baicalein on cortical pro-inflammatory
97
cytokines and the intestinal microbiome in SAMP8.
98
Results
99
Baicalein ameliorated the senescence status of SAMP8 mice
100
As shown in Figure 1, the grading score of senescence in SAMP8 mice was
101
significantly higher than that in SAMR1 mice after the age of 8 months. However,
102
after 4 weeks of treatment with baicalein, the grading score in SAMP8 mice was
103
significantly reduced with reduction percentages of 29.1%, 30.3% and 36.8% after 4,
104
6 and 8 week treatments, respectively. These results implied that baicalein could delay
105
the senescence status of SAMP8 mice.
5
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
Figure 1. The effects of baicalein on the grading scores of senescence were assessed at 2, 4, 6 and 8 weeks, and data corresponding to 0 weeks were obtained before baicalein administration. n = 10 to 15 mice per group. Data are expressed as the mean ± SEM;
###
p < 0.001 versus SAMR1 mice; * p < 0.05, **p < 0.01 versus SAMP8
mice. 106
Baicalein improved cognitive functions in the Morris water maze test
107
The results showed that the spatial learning and memory abilities of 8-month-old
108
SAMP8 mice were significantly lower than those of SAMR1 mice (Supplementary
109
Figure 1). Six weeks later, SAMP8 mice showed a longer escape latency from the first
110
day to the fifth day than SAMR1 mice, while baicalein-treated SAMP8 mice showed
111
a significant decrease in escape latency in comparison with SAMP8 mice on days 2, 4
112
and 5 in the place navigation test (Figure 2a). In the spatial probe test, the escape
113
latency was noticeably longer in the SAMP8 mice (36.15 ± 5.50 s) than the SAMR1
114
mice (10.64 ± 1.76 s). However, baicalein treatment significantly decreased the
115
escape latency (17.24 ± 3.45 s) (Figure 2b). As shown in Figure 2c, the time in the
116
target quadrant was significantly decreased in SAMP8 mice (12.60 ± 1.44 s) 6
ACS Paragon Plus Environment
Page 6 of 40
Page 7 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
117
compared with SAMR1 mice (17.95 ± 1.68 s), while the administration of baicalein
118
significantly increased with time (16.81 ± 1.42 s). The number of platform crossings
119
was significantly decreased in SAMP8 mice (2.58 ± 0.65) compared with SAMR1
120
mice (8.60 ± 0.79), and baicalein had a tendency to increase the platform crossing
121
numbers (4.00 ± 0.47) (Figure 2d). These results demonstrated that baicalein could
122
improve spatial learning and memory in SAMP8 mice.
Figure 2. The effects of baicalein on spatial learning and memory were assessed with the Morris water maze test. (a) Escape latencies during the 5 day acquisition phase. (b) Latency time in the retention phase. (c) Time in the target quadrant. (d) The number of platform crossings. n = 10 to 15 mice per group. Data are expressed as the mean ± SEM; #p < 0.05, ##p < 0.01, ###p < 0.001 versus SAMR1 mice; * p < 0.05, **p < 0.01, versus SAMP8 mice. 7
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
123
Baicalein improved cognitive abilities in the novel object recognition test and
124
olfactory memory test
125
The results showed that the exploration time for a new object was significantly longer
126
than that for a familiar object in SAMR1 and baicalein-treated SAMP8 mice; however,
127
the exploration time for new and familiar objects showed no difference in SAMP8
128
mice (Figure 3a). The recognition index could reflect the cognitive memory ability of
129
mice. Compared with that in SAMR1 mice, the recognition index in SAMP8 mice
130
was significantly decreased (28.9%); nevertheless, it was dramatically increased in
131
baicalein-treated SAMP8 mice (27.6%) in comparison with SAMP8 (Figure 3b). The
132
present results revealed that baicalein exerted a protective influence on recognition
133
memory.
Figure 3. Effects of baicalein on novel object recognition behavior. (a) Time spent on the familiar object (object A) and novel object (object C). (b) Recognition index. n = 10 to 15 mice per group.
&&
p < 0.01,
expressed as the mean ± SEM;
##
&&&
p < 0.001 versus object A. Data are
p < 0.01 versus SAMR1 mice; *p < 0.05 versus
SAMP8 mice. 134
In the olfactory memory test, with an increase in the number of exposures, the 8
ACS Paragon Plus Environment
Page 8 of 40
Page 9 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
135
mice gradually adapt to the smell, that is, olfactory memory. The results (Figure 4)
136
showed that as the number of exposures increased, SAMP8 mice spent longer on odor
137
investigation than SAMR1 mice, and baicalein treatment markedly increased the time
138
in the first trial, decreased the time in the third trial of amyl acetate odor investigation
139
(Figure 4a) and decreased the time in the fourth trial of ethyl valerate odor
140
investigation (Figure 4b). In other words, SAMP8 mice had a slower odor adaptation
141
process than SAMR1 mice; conversely, baicalein treatment improved odor habituation
142
behavior in SAMP8 mice. This indicated that baicalein had a protective effect on
143
olfactory memory in SAMP8 mice.
Figure 4. Effects of baicalein on odor habituation behavior. (a) Amyl acetate. (b) Ethyl valerate. n = 10 to 15 mice per group. Data are expressed as the mean ± SEM, #
p < 0.05, ##p < 0.01, ###p < 0.001 versus SAMR1 mice; * p < 0.05, **p < 0.01, ***p
< 0.001 versus SAMP8 mice. 144
Baicalein decreased the levels of pro-inflammatory cytokines in the brain cortex
145
of SAMP8 mice
146
To explore the effect of baicalein on brain inflammation, the levels of several
147
pro-inflammatory cytokines (IL-1β, IL-6, and TNF-α) in the brain cortex were 9
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
148
analyzed. The results (Figure 5) showed that IL-1β and TNF-α were significantly
149
higher in the SAMP8 mice than in SAMR1 mice (22.0% and 23.4%), while IL-1β,
150
IL-6, and TNF-α levels were significantly reduced after treatment with baicalein in
151
SAMP8 mice (9.4%, 10.7% and 11.9%, respectively) for 8 weeks. These data
152
indicated that baicalein could attenuate the secretion of pro-inflammatory cytokines in
153
old SAMP8 mice to suppress senescence-related neuroinflammation.
Figure 5. Effects of baicalein on the levels of pro-inflammatory cytokines in the brain cortex. (a) IL-1β. (b) IL-6. (c) TNF-α. n = 6 or 9 mice per group. Data are expressed as the mean ± SEM; ##p < 0.01 versus SAMR1 mice; *p < 0.05 versus SAMP8 mice. 154
Baicalein modulated several gut microbiotas in SAMP8 mice
155
Although our data demonstrated that baicalein could exert ameliorative effects on
156
age-associated brain lesions in SAMP8 mice, we next investigated whether baicalein
157
could affect the gut microbiota that may regulate the CNS. 10
ACS Paragon Plus Environment
Page 10 of 40
Page 11 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
158
By performing 16S rRNA amplicon sequencing on 24 samples, 1440262
159
high-quality sequences were obtained and were subsequently clustered into
160
operational taxonomic units (OTUs) at 97% sequence identity (Supplementary Table
161
1). The comparison of alpha diversity indices revealed that SAMP8 mice increased
162
alpha diversities compared to SAMR1 mice (Simpson index, p = 0.0190; Shannon
163
diversity index, p = 0.0199) and that there were no significant differences between
164
SAMP8 mice and baicalein-treated SAMP8 mice (Figure 6a~c and Supplementary
165
Figure 2). Principal Coordinate Analysis (PCoA) based on unweighted UniFrac
166
distances revealed that the gut microbiotas of SAMR1 mice, SAMP8 mice and
167
baicalein-treated SAMP8 mice could be clearly distinguished (Figure 6d). PCoA
168
based on weighted UniFrac distances also showed similar trends (Figure 6e). Gut
169
microbiota diversity analysis showed that intestinal microbiome diversity changed
170
during the aging process. Therefore, we further explored whether the composition of
171
intestinal flora was different between the two groups.
11
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
Figure 6. Effects of baicalein on intestinal flora. (a) The rarefaction curves, (b) the Chao1 estimator, and (c) Shannon alpha diversity index based on randomly subsampling the reads of each sample. (d, e) Unweighted and weighted UniFrac distance PCoA by the first two principal coordinates PC1 and PC2. (f) The histogram of the composition and abundance distribution of the samples at the genus level. Only the genera with abundance > 0.1% are presented in the legend. n = 8 mice per group. 172
As shown in Figure 6f, a total of 81 genera were obtained at the genus level. We
173
used Student’s t-test to identify the specific bacterial phylotypes that were different
174
between baicalein-treated and untreated SAMP8 mice. The results showed that
175
treatment with baicalein altered 6 strains in SAMP8 mice. Among these genera,
176
Mucispirillum, Parabacteroides, [Prevotella], Bacteroides, and Sutterella were 12
ACS Paragon Plus Environment
Page 12 of 40
Page 13 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
177
significantly reduced by 96.2%, 97.6%, 77.5%, 68.0% and 75.8% after treatment with
178
baicalein, respectively. In contrast, Christensenellaceae was significantly increased by
179
baicalein administration in SAMP8 mice (Figure 7 and Table 1).
Figure 7. Effects of baicalein on 6 kinds of genera in SAMP8 mice. n = 8 mice per 13
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
group. Data are expressed as the mean ± SEM
Page 14 of 40
###
p < 0.001, versus SAMR1 mice; *p
< 0.05, **p < 0.05 versus SAMP8 mice. Table 1. The bacterial taxa information (genus, family, order class, phylum) of 6 strains affected by baicalein. Genus
Family
Order
Class
Phylum
Unclassified
Christensenellaceae
Clostridiales
Clostridia
Firmicutes
Mucispirillum
Deferribacteraceae
Deferribacterales
Deferribacteres
Deferribacteres
Parabacteroides
Porphyromonadaceae
Bacteroidales
Bacteroidia
Bacteroidetes
[Prevotella]
[Paraprevotellaceae]
Bacteroidales
Bacteroidia
Bacteroidetes
Bacteroides
Bacteroidaceae
Bacteroidales
Bacteroidia
Bacteroidetes
Sutterella
Alcaligenaceae
Burkholderiales
Betaproteobacteria
Proteobacteria
180
The effect of baicalein on bacteria correlated with learning and memory abilities
181
and levels of pro-inflammatory cytokines in SAMP8 mice
182
To investigate whether the effect of baicalein on gut microbiota was associated with
183
learning and memory abilities or inflammation in the brain cortex, the correlation
184
coefficients between the differentially abundant OTUs and the cognitive abilities or
185
the levels of pro-inflammatory cytokines in the brain cortex were calculated using
186
Spearman’s correlation analyses in SAMP8 mice (n = 8 or 6) and baicalein-treated
187
SAMP8 mice (n = 8 or 6).
188
The
results
(Figure
8)
showed
that
the
community
abundance
of
189
Christensenellaceae was positively correlated with the recognition index in the novel
190
object recognition test (NORT), while the community abundance of Mucispirillum 14
ACS Paragon Plus Environment
Page 15 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
191
was negatively correlated with the recognition index. The community abundances of
192
Sutterella and Bacteroides were negatively correlated with time in the target quadrant
193
in the MWM. In addition, Bacteroides and escape latency in the spatial probe test of
194
the MWM were positively correlated. In short, the community abundances of
195
Mucispirillum, Bacteroides and Sutterella were negatively correlated with the
196
cognitive ability of SAMP8 mice, whereas Christensenellaceae was positively
197
correlated with the cognitive ability of SAMP8 mice. These results indicated that
198
intestinal microbiota might be linked to learning and memory dysfunction and that
199
baicalein improved cognitive ability, possibly by modulating certain specific flora in
200
the gut.
201
In addition, the community abundance of Christensenellaceae was negatively
202
correlated with the levels of IL-6 and TNF-α, while [Prevotella] was positively
203
correlated with the levels of IL-1β and IL-6. In addition, Mucispirillum and
204
Bacteroides were positively correlated with IL-6 in the brain cortex of SAMP8 mice.
205
These data indicated that intestinal microbiota might be linked to inflammation in the
206
brain cortex and that the anti-inflammatory role of baicalein was associated with the
207
modulation of specific intestinal flora to a certain degree.
15
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
Figure 8. Correlation between genera and learning and memory behaviors or pro-inflammatory cytokines. The red rhombus node represents the bacteria, the purple hexagon node represents the behavioral index, and the green triangle node represents the pro-inflammatory cytokines. The yellow edge represents the positive correlation (r > 0.6), the blue edge represents the negative correlation (r < -0.6), and the gray dotted edge represents no correlation (| r | < 0.6); r represents Spearman’s correlation coefficient. Data were collected from SAMP8 mice (n = 8 or 6) and baicalein-treated SAMP8 mice (n = 8 or 6). One-tailed Spearman’s analysis, confidence interval 95%. 208
Discussion
209
The grading score system was a valid and convenient method for evaluating the
210
degree of senescence in SAM mice. Consistent with previous reports (16), we
211
discovered that SAMP8 mice had significantly higher scores than SAMR1 mice at 8
212
months of age. After 4 weeks of baicalein administration, the grading score of 16
ACS Paragon Plus Environment
Page 16 of 40
Page 17 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
213
senescence was significantly reduced in SAMP8 mice. Specifically, baicalein
214
improved the reactivity and passivity, fur glossiness and density, and attenuated skin
215
ulcers and periophthalmic lesions, which indicate that baicalein exerted an anti-aging
216
effect.
217
Cell senescence is the essence of organism aging. Cell senescence is
218
accompanied by the acquisition of the senescence-associated secretory phenotype
219
(SASP),
220
pro-inflammatory cytokines and chemokines (17), and therefore, the accumulation of
221
senescent cells during aging induces a chronic low-grade inflammatory state.
222
Moreover, aging could drive the dysfunction of microglial cells, which in turn
223
increases the level of pro-inflammatory cytokines in the brain (18).
a
distinctive
phenotype
characterized
by enhanced
secretion of
224
An astonishing number of studies have demonstrated that the decreases in
225
learning and memory capabilities in SAMP8 mice are related to increased
226
inflammation in the cortex and hippocampus at a young age, manifesting as increases
227
in IL-1β, IL-6 and TNF-α, and a decrease in the protein expression of interleukin-10
228
(IL-10) (19, 20). In particular, an elevated level of IL-1β can inhibit LTP (21). The
229
potential cellular mechanisms are related to decreased mRNA expression of
230
brain-derived neurotrophic factor, induction of reactive oxygen species production,
231
and activation of c-jun N-terminal kinase and p38, which induce cell death and finally
232
lead to memory dysfunction (22).
233
In line with previous reports, we found that the levels of IL-1β and TNF-α in the
234
cortex of 10-month-old SAMP8 mice were higher than those in SAMR1 mice. 17
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
Page 18 of 40
235
However, the level of IL-6 did not change significantly (P = 0.0817) in the cortex of
236
10-month-old SAMP8 mice compared with SAMR1 mice. The reports on IL-6 were
237
inconsistent in different experiments (19, 23), which might be related to the age of the
238
mice and the experimental conditions. The levels of pro-inflammatory cytokines were
239
reduced after baicalein treatment for 8 weeks in SAMP8 mice. Our data suggested
240
that the ameliorative effect of baicalein on learning and memory impairment might be
241
through attenuation of cortical pro-inflammatory cytokines.
242
As early as the mid-19th century, the idea of the gut-brain axis (i.e., the
243
reciprocal impact of the gastrointestinal tract on brain function) was proposed.
244
Recently, increasing evidence has shown that the intestinal microflora can affect the
245
gut-brain axis, which in turn affects cognitive function (24). Surprisingly, the
246
formation of stable intestinal flora in humans occurs at the age of 2-3 years, the same
247
time frame for intestinal barrier maturation and hippocampal neurogenesis, which
248
together form the microbiota–gut–brain axis (25). Moreover, studies have shown that
249
some
250
norepinephrine, serotonin and acetylcholine). The neurotransmitters and cell wall
251
components of these microorganisms in the intestine can induce epithelial cells to
252
release the abovementioned molecules, thus regulating CNS function (26, 27).
intestinal
flora
can
produce
neurochemicals
(γ–aminobutyric
acid,
253
However, due to changes in intestinal microflora and permeability of the
254
intestinal barrier with aging, microbial products can enter the circulating blood by
255
penetrating the intestinal wall (9), cross the blood-brain-barrier and induce brain
256
inflammation (28). In addition, Erny et al. revealed that intestinal microbiota could 18
ACS Paragon Plus Environment
Page 19 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
257
control the maturation and function of microglia that secrete pro-inflammatory
258
cytokines by affecting system immune function (29). These studies hint that an
259
imbalance of intestinal flora is possibly related to the level of pro-inflammatory
260
cytokines in the CNS.
261
The present study showed that the alpha diversity increased and that the profile
262
of intestinal flora significantly changed in 10-month-old SAMP8 mice compared with
263
SAMR1 mice, which might be caused by the fact that some frailty-associated
264
alterations may increase the diversity of the age-related microbiome and change the
265
original flora profile (30). In addition, the profile of the intestinal flora significantly
266
changed in baicalein-treated SAMP8 mice compared with SAMP8 mice. We observed
267
that 5 strains (Mucispirillum, Parabacteroides, [Prevotella], Sutterella, and
268
Bacteroides) were apparently decreased and that 1 strain (Christensenellaceae) was
269
apparently increased after treatment with baicalein in SAMP8 mice. The results from
270
Spearman’s analysis indicated that Mucispirillum, Bacteroides and Sutterella were
271
related to cognitive deterioration and were modulated by baicalein and that
272
Mucispirillum, [Prevotella] and Bacteroides were associated with an increase in
273
inflammation. Moreover, Christensenella, a strain closely related to longevity, was
274
modulated by baicalein, helping reduce inflammation and protect cognition in
275
SAMP8 mice. Many studies have shown that changes in Mucispirillum,
276
Parabacteroides, [Prevotella], Sutterella, and Bacteroides in the intestinal flora were
277
closely related to inflammation (31-33). Magnusson et al. revealed that the proportion
278
of Bacteroidales was closely related to cognitive function (34). Interestingly, 19
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
279
Christensenellaceae increased in relative abundance and prevalence in the gut
280
microbiota of centenarians and is considered an important flora to maintain the health
281
of the elderly (35). These results indicate that the gut microbiome is closely related to
282
cognition and inflammation.
283
However, the underlying mechanisms of baicalein regulating intestinal
284
microbiota remain elusive. Studies have shown host's immune system plays an
285
important role in determining the composition of the gut microbiota (36). Niess et al.
286
found dendritic cells, a kind of mononuclear phagocyte of the intestinal lamina
287
propria, could form transepithelial dendrites depending on the chemokine receptor
288
CX3CR1, which enable the cells take up bacteria and drive downstream immune
289
responses in order to provide defense against pathogenic micro-organisms (37).
290
Several studies have revealed that baicalein could regulate immune-related pathways
291
including NF-κB and MAPK signaling pathways (38, 39). Meanwhile, our results
292
suggest that baicalein down-regulated the levels of cortical pro-inflammatory
293
cytokines. Therefore, we speculated that baicalein may affect intestinal flora by
294
regulating immunity, while the exact mechanism warrant further exploration.
295
The above results indicate that baicalein has a beneficial effect on SAMP8 mice.
296
Unfortunately, its low solubility causes baicalein to have a low oral bioavailability.
297
Nevertheless, some studies have shown that baicalein is well absorbed in the small
298
intestine but that during this process, it is subjected to extensive glucuronidation and
299
sulfation metabolism, which may be the reason for its low oral bioavailability (40).
300
Moreover, it has been shown that a higher loading dose of baicalein contributed to a 20
ACS Paragon Plus Environment
Page 20 of 40
Page 21 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
301
reduction in metabolism in the intestine during preliminary metabolic studies (41).
302
Recently, some studies have found that baicalein-loaded nanoemulsions or
303
nanocrystals could ameliorate the oral bioavailability of baicalein (42, 43). In addition,
304
Tsai et al. showed that baicalein is capable of penetrating the blood-brain barrier (44).
305
These results revealed that baicalein is a potential compound for improving
306
aging-related learning and memory impairment.
307
In summary, using the SAMP8 model, we have demonstrated that baicalein
308
treatment (i) lowered the grading score of senescence and improved behavior and
309
cognitive functions as evaluated by spatial learning and memory, novel object
310
recognition, and olfactory memory; (ii) ameliorated cortical pro-inflammatory
311
cytokines by reducing the cortical concentrations of pro-inflammatory cytokines such
312
as IL-1β, IL-6, TNF-α; and (iii) shifted the intestinal microbiome profile towards
313
antiaging. Nevertheless, the intricate relationship between the gut microbiome and
314
aging-related learning and memory decline needs to be further investigated.
315
Methods
316
Chemicals and kits
317
Baicalein (purity 98%) was purchased from Jingzhu Biotechnology Co., Ltd. (Nanjing,
318
China). Ethyl valerate (purity 99.5%) and amyl acetate (purity 99.5%) were
319
acquired from Guangfu Fine Chemical Research Institute (Tianjin, China). Paraffin
320
liquid was purchased from Dengfeng Chemical Co., Ltd. (Tianjin, China). The ELISA
321
kits (IL-6, IL-1β and TNF-α) were obtained from Beijing Andy Huatai Technology
322
Co., Ltd. (Beijing, China). The Fast DNA SPIN extraction kits were obtained from 21
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
323
MP Biomedicals (Santa Ana, CA, USA); Agencourt AMPure Beads were
324
purchased from Beckman Coulter, Inc. (Indianapolis, IN); and the PicoGreen dsDNA
325
Assay Kit was obtained from Invitrogen (Carlsbad, CA, USA).
326
Animals and drug administration
327
Eight-month-old male SAMP8 and SAMR1 mice were provided by the First Teaching
328
Hospital of Tianjin University of Traditional Chinese Medicine (Tianjin, China). Mice
329
were housed in single cages and allowed unrestricted access to food and water on a
330
light/dark (1:1) cycle under controlled conditions (22 ± 2‐, 50 ± 10% humidity). The
331
mice were acclimated to the new environment for 7 days prior to the commencement
332
of the experiment.
333
Baicalein was dissolved in saline solution-0.9% NaCl to form a suspension, and
334
it was used after ultrasonic treatment. The dose of baicalein (200 mg/kg/d) was
335
determined based on the previous experiments by Duan et al. (11) and the work of
336
Jeong et al. (45). SAMP8 mice were split into two groups to be intragastrically
337
administered baicalein (200 mg/kg/d, n = 14, SAMP8 + baicalein group) or
338
intragastrically administered saline solution-0.9% NaCl (n = 13, SAMP8 group). The
339
SAMR1 mice were used as a control group and were intragastrically administered
340
saline solution-0.9% NaCl (n = 15, SAMR1 group). After administration of baicalein
341
for 6 weeks, the behavioral experiments were performed. Following the behavioral
342
experiments, their fresh stool was collected. After 8 weeks of administration, the mice
343
were sacrificed by cervical dislocation. The brain cortex was collected and stored at
344
-80‐ until processing. All experimental procedures complied with institutional animal 22
ACS Paragon Plus Environment
Page 22 of 40
Page 23 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
345
care and use committee (IACUC)-approved animal protocols that were based on the
346
Guide for the Care and Use of Laboratory Animals of the National Institutes of
347
Health.
348
The grading score of senescence
349
The grading score of senescence, developed by Prof. Takeda Toshio of Kyoto
350
University (46), has been widely used in aging-related studies to assess the
351
senescence status of the senescence-accelerated mouse (47, 48). In this evaluation
352
system, 11 aging-related indicators (reactivity, passivity, glossiness, coarseness, hair
353
loss, ulcer, periophthalmic lesions, cataract, corneal ulcer, corneal opacity and
354
lordokyphosis) were observed (49). According to the detailed criteria, the degree of
355
senescence in each category was graded from 0 to 4, where grade 0 indicated no
356
apparent changes and grade 4 indicated severe changes. For each mouse, the total
357
score was calculated.
358
Morris water maze test
359
The Morris water maze (MWM) test is a behavioral experiment applied to assess
360
spatial learning and memory abilities (50). The MWM test was conducted according
361
to previous reports by Chun et al. (51) and Wang et al. (52). The behavioral task
362
consists of two phases: acquisition (spatial learning) and retention (spatial memory).
363
In the acquisition phase (5 sequential days), each animal was allowed 4 daily trials.
364
When the mice climbed the platform, they had to remain on it for 10 s. If the mouse
365
failed to climb the platform within 60 s, it would be placed on the platform for 10 s. In
366
the retention phase, mice were allowed to swim to search for the platform for 60 s, 23
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
367
during which the platform was removed. The escape latencies, time in the target
368
quadrant and times of passing through the removed platform in the spatial probe test
369
were recorded and analyzed.
370
Novel object recognition test
371
The novel object recognition test (NORT) is a behavioral experiment that examines
372
memory ability based on differences between familiar and new objects, and this
373
method is comparable to the memory test used for humans (53). The NORT was
374
conducted according to previous reports by Wang et al. (52) and Chun et al. (51). The
375
procedure was divided into three phases: habituation, acquisition, and retention. In the
376
habituation phase (three days), the animal was allowed to explore freely in the empty
377
box for 10 minutes to familiarize with the test environment. In the acquisition phase
378
(the fourth day), the mice were permitted a single 10 minute exploration session,
379
during which two stably identical objects (A and B) were placed in a symmetrical
380
position in the center of the box with enough space between them and the walls. In the
381
retention phase (the fifth day), mice were subjected to a single 4 minute exploration
382
session. In the course of this session, the mice were placed in the box, and one of the
383
two identical objects was switched for a new one with a different color and shape
384
(novel object C). The exploration time for objects A and C was recorded in the
385
acquisition and retention phases. The recognition index for each mouse was expressed
386
as a ratio of the amount of time spent exploring the novel object C, (Tc-Ta)/(Tc+Ta),
387
where Ta and Tc were the time exploring objects A and C, respectively, during the
388
retention phase. 24
ACS Paragon Plus Environment
Page 24 of 40
Page 25 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
389
Olfactory memory test
390
The olfactory memory deficits of mice were detected using an odor cross-habituation
391
test (54) with slight modifications. The olfactory memory test was conducted referring
392
to previous reports by Yang & Crawley (55) and Cramer et al. (56). The experiment
393
was divided into the adaptation period (1st day) and the detection period (2nd day).
394
Three 50 ml centrifuge tubes were taken, and a drill was used evenly on the edge of
395
the lid. Then, cotton balls dipped in paraffin liquid, ethyl valerate, and amyl acetate
396
were placed into the centrifuge tubes. An empty mouse cage was used as the
397
experimental site and was kept clean. During the adaptation period, a centrifuge tube
398
containing liquid paraffin was fixed in the center of the cage and mice were allowed a
399
single 10 minute exploration session to familiarize with the test environment and
400
eliminate the visual impact of the centrifuge tube. During the test period, a centrifuge
401
tube containing paraffin liquid was placed in the center of the cage first, and the mice
402
were allowed to explore freely for 30 s, and then the centrifuge tube was removed.
403
After an interval of 30 s, the centrifuge tube was put back in its original position. Each
404
odor (ethyl valerate and amyl acetate) was delivered for 4 successive trials in this
405
manner. The sniffing time was defined as when the animal was orienting towards the
406
centrifuge tube with its nose being 1 cm or closer to the tube, and time spent biting or
407
climbing the centrifuge tubes was excluded.
408
Assay of pro-inflammatory cytokines
409
The brain cortex was homogenized in a volume of 9 times ice-cold, 0.1 M phosphate
410
buffer saline (pH 7.4). The supernatant was used to detect the levels of IL-6, IL-1β 25
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
Page 26 of 40
411
and TNF-α using ELISA kits. The ELISA was performed according to the
412
manufacturer’s instructions.
413
Intestinal microbial community analysis
414
All fecal samples (180 ~ 200 mg) were quickly collected after free defecation in mice
415
(n = 8 per group). Total DNA was extracted using the Fast DNA SPIN extraction kits
416
according to the manufacturer’s instructions. The primers that were used for PCR
417
amplification of the bacterial 16S rRNA genes V3–V4 region were forward primer
418
5’-ACTCCTACGGGAGGCAGCA-3’
419
5’-GGACTACHVGGGTWTCTAAT-3’, which were inserted in sample-specific 7-bp
420
barcodes for multiplex sequencing. The PCR was performed in a volume of 25 µL
421
consisting of Q5 reaction buffer (5 µL), Q5 High-Fidelity GC buffer (5 µL), Q5
422
High-Fidelity DNA Polymerase (0.25 µL), dNTPs (2 µL), primers (1 µL), cDNA
423
template (2 µL), and ddH2O (8.75 µL). Thermal cycler conditions consisted of initial
424
denaturation for 2 minutes at 98 °C, followed by 25 cycles of amplification (15 s at
425
98 °C, 30 s at 55 °C, 30 s at 72 °C), with a final incubation of 5 minutes at 72 °C.
426
After purification using the Agencourt AMPure Beads and quantification using the
427
PicoGreen dsDNA Assay Kit, PCR amplicons were mixed in equal amounts, and
428
2×300-bp pair-end sequencing was conducted on the Illumina MiSeq platform with
429
MiSeq Reagent Kit v3.
and
the
reverse
primer
430
The Quantitative Insights Into Microbial Ecology (QIIME, v1.8.0) pipeline was
431
employed to eliminate failed sequences (57), and FLASH was used to assemble
432
paired-end reads (58) as previously described. The rest of the sequences were 26
ACS Paragon Plus Environment
Page 27 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
433
clustered into OTUs at 97% sequence identity by UCLUST following chimera
434
detection. OTU taxonomic classification was carried out by BLAST searching (59)
435
for representative sequences set against the Greengenes Database (60) using the best
436
hit.
437
Sequence data analyses were processed primarily for QIIME and R packages
438
(v3.2.0). OUT-level alpha diversity indices that were mainly used to investigate the
439
species diversity within the community such as Rarefaction curves, Chao1 richness
440
estimator, ACE metric (Abundance-based Coverage Estimator), Simpson index, and
441
Shannon diversity index were calculated in QIIME. The rarefaction curve is used to
442
determine whether the current sequencing depth is sufficient to reflect the diversity of
443
microorganisms contained in each sample. Chao1 and ACE are used to estimate the
444
number of species actually present in the community, and the larger the value is, the
445
higher the abundance of the community. Simpson and Shannon are used to estimate
446
the diversity of the community, and the higher the value is, the more diverse the
447
community. Beta diversity analysis was performed to examine the similarity of the
448
community structure between different samples using UniFrac distance metrics (61,
449
62) and visualized via PCoA (63). The taxonomy compositions and abundances were
450
visualized using MEGAN (64) and GraPhlAn (65). Intestinal microbial community
451
analysis was performed by Shanghai Personal Biotechnology Co., Ltd. (Shanghai,
452
China).
453
Statistical analysis
454
All data are expressed as the mean ± SEM. Repeated measures and multivariate 27
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
455
analysis of variance (ANOVA) in SPSS 16.0 (SPSS Software, Inc., Chicago, IL) were
456
used for analysis of the data from the place navigation test. Other comparisons
457
between groups were performed using an unpaired two-tailed Student’s t-test by
458
GraphPad Prism 6.0 (GraphPad Software, Inc., La Jolla, CA, USA). P < 0.05 was
459
considered statistically significant. Correlations were performed by one-tailed
460
Spearman’s analysis with 95% confidence intervals.
461
Supporting Information
462
Morris water maze before administration with baicalein in 8-month-old mice,
463
OUT-level alpha diversity indices, and the results of OTU classification and
464
taxonomic status identification.
465
Abbreviations
466
ACE: Abundance-based Coverage Estimator; Aβ: amyloid-β; AD: Alzheimer’s;
467
CNS: central nervous system; IACUC: institutional animal care and use committee;
468
IL-6: Interleukin-6; IL-1β: interleukin-1 beta; TNF-α: tumor necrosis factor-α; LTP:
469
long-term potentiation; MWM: Morris water maze; NORT: novel object recognition
470
test; OUT: operational taxonomic unit; PCoA: principal coordinate analysis; SAMP8:
471
senescence-accelerated mouse prone 8; SAMR1: senescence accelerated mouse
472
resistant 1.
473
Author Information
474
Corresponding authors:
475
Li Gao, Modern Research Center for Traditional Chinese Medicine, Shanxi University,
476
No.92 Wu Cheng Road, Taiyuan 030006 China. E-mail:
[email protected]. Tel & 28
ACS Paragon Plus Environment
Page 28 of 40
Page 29 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
477
Fax: 86-351-7018379.
478
Xuemei Qin, Modern Research Center for Traditional Chinese Medicine, Shanxi
479
University,
480
[email protected]. Tel & Fax: 86-351-7011501.
481
Author Contributions
482
LG, conception and design, interpretation of data, writing, revising and final approval
483
of the manuscript submitted. JL, performed the experiments and drafting of the
484
manuscript. XH, revising of the manuscript. YZ, technical or material support; study
485
supervision. XQ and GD, design of the study and writing the protocol.
486
Funding Sources
487
This work is supported by the National Natural Science Foundation of China
488
(81603319), Programs of Science and Technology and Higher Education of Shanxi
489
Province (2015118), Science and Technology Innovation Team of Shanxi Province
490
(201605D131045-18), and Key laboratory of Effective Substances Research and
491
Utilization in TCM of Shanxi province (201705D111008-21).
492
Conflict of Interest
493
The authors declare that thy have no competing interests.
494
Acknowledgements
495
Not applicable.
No.92
Wu
Cheng
Road,
Taiyuan
29
ACS Paragon Plus Environment
030006
China.
E-mail:
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
Page 30 of 40
496
References
497
1.
498
and cognitive decline, Nature 464, 529-535.
499
2.
500
hypothalamo-pituitary-adrenocortical function during acute and chronic stress,
501
Ann. New York Acad. Sci. 1148, 64-73.
502
3.
503
glucocorticoid vulnerability hypothesis, Rev. Neurosci. 19, 395-411.
504
4. Franceschi, C., Capri, M., Monti, D., Giunta, S., Olivieri, F., Sevini, F., Panourgia,
505
M. P., Invidia, L., Celani, L., Scurti, M., Cevenini, E., Castellani, G. C., and Salvioli,
506
S. (2007) Inflammaging and anti-inflammaging: a systemic perspective on aging and
507
longevity emerged from studies in humans, Mech. Ageing Dev. 128, 92-105.
508
5.
509
glucose level associated with body mass index and gut microbiota in elderly people,
510
Microb. Ecol. Health. Dis. 25, 22857.
511
6.
512
G. (2009) Combined PCR-DGGE fingerprinting and quantitative-PCR indicates shifts
513
in fecal population sizes and diversity of Bacteroides, Bifidobacteria and Clostridium
514
cluster IV in institutionalized elderly, Exp Gerontol 44, 440-446.
515
7.
516
Rana, A., Rera, M., Pellegrini, M., Ja, W. W., and Walker, D. W. (2015) Distinct shifts
517
in microbiota composition during Drosophila aging impair intestinal function and
Bishop, N. A., Lu, T., and Yankner, B. A. (2010) Neural mechanisms of ageing
Jankord,
R.,
and
Herman,
J.
P.
(2008)
Limbic
regulation
of
Conrad, C. D. (2008) Chronic stress-induced hippocampal vulnerability: the
Sepp, E., Kolk, H., Loivukene, K., and Mikelsaar, M. (2014) Higher blood
Zwielehner, J., Liszt, K., Handschur, M., Lassl, C., Lapin, A., and Haslberger, A.
Clark, R. I., Salazar, A., Yamada, R., Fitz-Gibbon, S., Morselli, M., Alcaraz, J.,
30
ACS Paragon Plus Environment
Page 31 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
518
drive mortality, Cell rep. 12, 1656-1667.
519
8.
520
links metabolic and inflammatory markers of aging to death in Drosophila, Proc. Natl.
521
Acad. Sci. USA. 109, 21528-21533.
522
9.
523
P., Loukov, D., Schenck, L. P., Jury, J., Foley, K. P., Schertzer, J. D., Larche, M. J.,
524
Davidson, D. J., Verdu, E. F., Surette, M. G., and Bowdish, D. M. E. (2017)
525
Age-associated microbial dysbiosis promotes intestinal permeability, systemic
526
inflammation, and macrophage dysfunction, Cell Host Microbe 21, 455-466.e454.
527
10. Gao, L., Duan, D. D., Zhang, J. Q., Zhou, Y. Z., Qin, X. M., and Du, G. H. (2016)
528
A bioinformatic approach for the discovery of antiaging effects of baicalein from
529
Scutellaria baicalensis Georgi, Rejuvenation Res. 15, 414-422.
530
11. Duan, D. D., Wang, K. X., Zhou, Y. Z., Qin, X. M., Gao, L., and Du, G. H. (2017)
531
Baicalein exerts beneficial effects in d-galactose-induced aging rats through
532
attenuation of inflammation and metabolic dysfunction, Rejuvenation Res. 20,
533
506-516.
534
12. Wang, W., Wang, F., Yang, Y. J., Hu, Z. L., Long, L. H., Fu, H., Xie, N., and Chen,
535
J. G. (2011) The flavonoid baicalein promotes NMDA receptor-dependent long-term
536
potentiation and enhances memory, Br. J. Pharmacol. 162, 1364-1379.
537
13. Gu, X. H., Xu, L. J., Liu, Z. Q., Wei, B., Yang, Y. J., Xu, G. G., Yin, X. P., and
538
Wang, W. (2016) The flavonoid baicalein rescues synaptic plasticity and memory
539
deficits in a mouse model of Alzheimer's disease, Behav. Brain Res. 311, 309-321.
Rera, M., Clark, R. I., and Walker, D. W. (2012) Intestinal barrier dysfunction
Thevaranjan, N., Puchta, A., Schulz, C., Naidoo, A., Szamosi, J. C., Verschoor, C.
31
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
540
14. Ohta, A., Hirano, T., Yagi, H., Tanaka, S., Hosokawa, M., and Takeda, T. (1989)
541
Behavioral characteristics of the SAM-P/8 strain in Sidman active avoidance task,
542
Brain Res. 498, 195-198.
543
15. Morley, J. E., Farr, S. A., Kumar, V. B., and Armbrecht, H. J. (2012) The SAMP8
544
mouse: a model to develop therapeutic interventions for Alzheimer's disease, Curr.
545
Pharm. Des. 18, 1123-1130.
546
16. Zhao, L., Jia, Y., Yan, D., Zhou, C., Han, J., and Yu, J. (2013) Aging-related
547
changes of triose phosphate isomerase in hippocampus of senescence accelerated
548
mouse and the intervention of acupuncture, Neurosci. Lett. 542, 59-64.
549
17. Campisi, J. (2011) Cellular senescence: putting the paradoxes in perspective, Curr.
550
Opin. Genet. Dev. 21, 107-112.
551
18. Mosher, K. I., and Wyss-Coray, T. (2014) Microglial dysfunction in brain aging
552
and Alzheimer's disease, Biochem. Pharmacol. 88, 594-604.
553
19. Jin, G., Bai, D., Yin, S., Yang, Z., Zou, D., Zhang, Z., Li, X., Sun, Y., and Zhu, Q.
554
(2016) Silibinin rescues learning and memory deficits by attenuating microglia
555
activation and preventing neuroinflammatory reactions in SAMP8 mice, Neurosci.
556
Lett. 629, 256-261.
557
20. Gines, C., Cuesta, S., Kireev, R., Garcia, C., Rancan, L., Paredes, S. D., Vara, E.,
558
and Tresguerres, J. A. F. (2017) Protective effect of resveratrol against inflammation,
559
oxidative stress and apoptosis in pancreas of aged SAMP8 mice, Neurosci. Lett. 90,
560
61-70.
561
21. Kelly, A., Vereker, E., Nolan, Y., Brady, M., Barry, C., Loscher, C. E., Mills, K. 32
ACS Paragon Plus Environment
Page 32 of 40
Page 33 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
562
H., and Lynch, M. A. (2003) Activation of p38 plays a pivotal role in the inhibitory
563
effect of lipopolysaccharide and interleukin-1 beta on long term potentiation in rat
564
dentate gyrus, J. Biol. Chem. 278, 19453-19462.
565
22. Vereker, E., O'Donnell, E., and Lynch, M. A. (2000) The inhibitory effect of
566
interleukin-1beta on long-term potentiation is coupled with increased activity of
567
stress-activated protein kinases, J. Neurosci. 20, 6811-6819.
568
23. Grinan-Ferre, C., Palomera-Avalos, V., Puigoriol-Illamola, D., Camins, A.,
569
Porquet, D., Pla, V., Aguado, F., and Pallas, M. (2016) Behaviour and cognitive
570
changes correlated with hippocampal neuroinflammaging and neuronal markers in
571
female SAMP8, a model of accelerated senescence, Exp. Gerontol. 80, 57-69.
572
24. Cryan, J. F., and Dinan, T. G. (2012) Mind-altering microorganisms: the impact of
573
the gut microbiota on brain and behaviour, Nature reviews. Nat. Rev. Neurosci. 13,
574
701-712.
575
25. Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G.,
576
Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., Heath, A.
577
C., Warner, B., Reeder, J., Kuczynski, J., Caporaso, J. G., Lozupone, C. A., Lauber, C.,
578
Clemente, J. C., Knights, D., Knight, R., and Gordon, J. I. (2012) Human gut
579
microbiome viewed across age and geography, Nature 486, 222-227.
580
26. Lyte, M. (2011) Probiotics function mechanistically as delivery vehicles for
581
neuroactive compounds: Microbial endocrinology in the design and use of probiotics,
582
BioEssays. 33, 574-581.
583
27. Barrett, E., Ross, R., O'toole, P., Fitzgerald, G., and Stanton, C. (2012) γ‐ 33
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
584
Aminobutyric acid production by culturable bacteria from the human intestine, J.
585
Appl. Microbiol. 113, 411-417.
586
28. Petra, A. I., Panagiotidou, S., Hatziagelaki, E., Stewart, J. M., Conti, P., and
587
Theoharides, T. C. (2015) Gut-microbiota-brain axis and its effect on neuropsychiatric
588
disorders with suspected immune dysregulation, Clin. Ther. 37, 984-995.
589
29. Erny, D., Hrabe de Angelis, A. L., Jaitin, D., Wieghofer, P., Staszewski, O., David,
590
E., Keren-Shaul, H., and Mahlakoiv, T. (2015) Host microbiota constantly control
591
maturation and function of microglia in the CNS, Nat. Neurosci. 18, 965-977.
592
30. O'Toole, P. W., and Jeffery, I. B. (2015) Gut microbiota and aging, Science 350,
593
1214-1215.
594
31. Loy, A., Pfann, C., Steinberger, M., Hanson, B., Herp, S., Brugiroux, S., Gomes
595
Neto, J. C., Boekschoten, M. V., Schwab, C., Urich, T., Ramer-Tait, A. E., Rattei, T.,
596
Stecher, B., and Berry, D. (2017) Lifestyle and horizontal gene transfer-mediated
597
evolution of Mucispirillum schaedleri, a core member of the murine gut microbiota,
598
mSystems 2. e00171-16.
599
32. Dziarski, R., Park, S. Y., Kashyap, D. R., Dowd, S. E., and Gupta, D. (2016)
600
Pglyrp-regulated gut microflora Prevotella falsenii, Parabacteroides distasonis and
601
Bacteroides eggerthii enhance and Alistipes finegoldii attenuates colitis in mice, PloS
602
One 11, e0146162.
603
33. Lavelle, A., Lennon, G., O'Sullivan, O., Docherty, N., Balfe, A., Maguire, A.,
604
Mulcahy, H. E., Doherty, G., O'Donoghue, D., Hyland, J., Ross, R. P., Coffey, J. C.,
605
Sheahan, K., Cotter, P. D., Shanahan, F., Winter, D. C., and O'Connell, P. R. (2015) 34
ACS Paragon Plus Environment
Page 34 of 40
Page 35 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
606
Spatial variation of the colonic microbiota in patients with ulcerative colitis and
607
control volunteers, Gut 64, 1553-1561.
608
34. Magnusson, K. R., Hauck, L., Jeffrey, B. M., Elias, V., Humphrey, A., Nath, R.,
609
Perrone, A., and Bermudez, L. E. (2015) Relationships between diet-related changes
610
in the gut microbiome and cognitive flexibility, Neuroscience 300, 128-140.
611
35. Biagi, E., Franceschi, C., Rampelli, S., Severgnini, M., Ostan, R., Turroni, S.,
612
Consolandi, C., Quercia, S., Scurti, M., Monti, D., Capri, M., Brigidi, P., and Candela,
613
M. (2016) Gut microbiota and extreme longevity, Curr. Biol. 26, 1480-1485.
614
36. Lei, Y. M., Nair, L., and Alegre, M. L. (2015) The interplay between the intestinal
615
microbiota and the immune system, Clin. Res. Hepato.l Gastroenterol. 39, 9-19.
616
37. Niess, J. H., Brand, S., Gu, X., Landsman, L., Jung, S., McCormick, B. A., Vyas, J.
617
M., Boes, M., Ploegh, H. L., Fox, J. G., Littman, D. R., and Reinecker, H. C. (2005)
618
CX3CR1-mediated dendritic cell access to the intestinal lumen and bacterial clearance,
619
Science 307, 254-258.
620
38. Li, J., Ma, J., Wang, K. S., Mi, C., Wang, Z., Piao, L. X., Xu, G. H., Li, X., Lee, J.
621
J., and Jin, X. (2016) Baicalein inhibits TNF-α-induced NF-κB activation and
622
expression of NF-κB-regulated target gene products, Oncol. Rep. 36, 2771-2776.
623
39. Wang, W., Zhou, P. H., Xu, C. G., Zhou, X. J., Hu, W., and Zhang, J. (2015)
624
Baicalein attenuates renal fibrosis by inhibiting inflammation via down-regulating
625
NF-κB and MAPK signal pathways, J. Mol. Histol.46, 283-290.
626
40. Zhang, L., Lin, G., Kovacs, B., Jani, M., Krajcsi, P., and Zuo, Z. (2007)
627
Mechanistic study on the intestinal absorption and disposition of baicalein, Eur. J. 35
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
628
Pharm. Sci. 31, 221-231.
629
41. Zhang, L., Lin, G., Chang, Q., and Zuo, Z. (2005) Role of intestinal first-pass
630
metabolism of baicalein in its absorption process, Pharm. Res. 22, 1050-1058.
631
42. Yin, J., Xiang, C., Wang, P., Yin, Y., and Hou, Y. (2017) Biocompatible
632
nanoemulsions based on hemp oil and less surfactants for oral delivery of baicalein
633
with enhanced bioavailability, Int. J. Nanomedicine 12, 2923-2931.
634
43. Zhang, J., Lv, H., Jiang, K., and Gao, Y. (2011) Enhanced bioavailability after
635
oral and pulmonary administration of baicalein nanocrystal, Int. J. Pharm. 420,
636
180-188.
637
44. Tsai, T. H., Liu, S. C., Tsai, P. L., Ho, L. K., Shum, A. Y., and Chen, C. F. (2002)
638
The effects of the cyclosporin A, a P-glycoprotein inhibitor, on the pharmacokinetics
639
of baicalein in the rat: a microdialysis study, Br. J. Pharmacol. 137, 1314-1320.
640
45. Jeong, K., Shin, Y. C., Park, S., Park, J. S., Kim, N., Um, J. Y., Go, H., Sun, S.,
641
Lee, S., Park, W., Choi, Y., Song, Y., Kim, G., Jeon, C., Park, J., Lee, K., Bang, O.,
642
and Ko, S. G. (2011) Ethanol extract of Scutellaria baicalensis Georgi prevents
643
oxidative damage and neuroinflammation and memorial impairments in artificial
644
senescense mice., J. Biomed. Sci. 18, 14.
645
46. Hosokawa, M., Kasai, R., Higuchi, K., Takeshita, S., Shimizu, K., Hamamoto, H.,
646
Honma, A., Irino, M., Toda, K., Matsumura, A., and et al. (1984) Grading score
647
system: a method for evaluation of the degree of senescence in senescence accelerated
648
mouse (SAM), Mech. Ageing Dev. 26, 91-102.
649
47. Wang, J., Cheng, X., Zhang, X., Cheng, J., Xu, Y., Zeng, J., Zhou, W., and Zhang, 36
ACS Paragon Plus Environment
Page 36 of 40
Page 37 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
650
Y. (2016) The anti-aging effects of LW-AFC via correcting immune dysfunctions in
651
senescence accelerated mouse resistant 1 (SAMR1) strain, Oncotarget 7,
652
26949-26965.
653
48. Ma, D., Zhu, Y., Li, Y., Yang, C., Zhang, L., Li, Y., Li, L., and Zhang, L. (2016)
654
Beneficial effects of cornel iridoid glycoside on behavioral impairment and
655
senescence status in SAMP8 mice at different ages, Behav. Brain Res. 312, 20-29.
656
49. Moriguchi, T., Saito, H., and Nishiyama, N. (1997) Anti‐ageing effect of aged
657
garlic extract in the inbred brain atrophy mouse model, Clin. Exp. Pharmacol. Physiol.
658
24, 235-242.
659
50. Morris, R. (1984) Developments of a water-maze procedure for studying spatial
660
learning in the rat, J. Neurosci. Methods 11, 47-60.
661
51. Chun, Y. S., Kim, J., Chung, S., Khorombi, E., Naidoo, D., Nthambeleni, R.,
662
Harding, N., Maharaj, V., Fouche, G., and Yang, H. O. (2017) Protective roles of
663
monsonia angustifolia and its active compounds in experimental models of
664
Alzheimer's disease, J. Agric. Food Chem. 65, 3133-3140.
665
52. Wang, J., Ye, F., Cheng, X., Zhang, X., Liu, F., Liu, G., Ni, M., Qiao, S., Zhou, W.,
666
and Zhang, Y. (2016) The effects of LW-AFC on intestinal microbiome in
667
senescence-accelerated mouse prone 8 strain, a mouse model of Alzheimer's disease, J.
668
Alzheimers Dis. 53, 907-919.
669
53. Ennaceur, A., and Delacour, J. (1988) A new one-trial test for neurobiological
670
studies of memory in rats. 1: behavioral data, Behav. Brain Res. 31, 47-59.
671
54. Wesson, D. W., Levy, E., Nixon, R. A., and Wilson, D. A. (2010) Olfactory 37
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
672
dysfunction correlates with amyloid-beta burden in an Alzheimer's disease mouse
673
model, J. Neurosci. 30, 505-514.
674
55. Yang, M., and Crawley, J. N. (2009) Simple behavioral assessment of mouse
675
olfaction, Curr. Protoc. Neurosci. 8, 8.24.
676
56. Cramer, P. E., Cirrito, J. R., Wesson, D. W., Lee, C. Y., Karlo, J. C., Zinn, A. E.,
677
Casali, B. T., Restivo, J. L., Goebel, W. D., James, M. J., Brunden, K. R., Wilson, D.
678
A., and Landreth, G. E. (2012) ApoE-directed therapeutics rapidly clear beta-amyloid
679
and reverse deficits in AD mouse models, Science 335, 1503-1506.
680
57. Caporaso, J. G., J. Kuczynski, J. Stombaugh, K. Bittinger, F. D. Bushman, E. K.
681
Costello, N. Fierer, A. G. Pena, J. K. Goodrich, J. I. Gordon, G. A. Huttley, S. T.
682
Kelley, D. Knights, J. E. Koenig, R. E. Ley, C. A. Lozupone, D. McDonald, B. D.
683
Muegge, M. Pirrung, J. Reeder, J. R. Sevinsky, P. J. Tumbaugh, W. A. Walters, J.
684
Widmann, T. Yatsunenko, J. Zaneveld and R. Knight (2010) QIIME allows analysis of
685
high-throughput community sequencing data, Nat. Methods 7, 335-336.
686
58. Magoc, T., and Salzberg, S. L. (2011) FLASH: fast length adjustment of short
687
reads to improve genome assemblies, Bioinformatics 27, 2957-2963.
688
59. Edgar, R. C. (2010) Search and clustering orders of magnitude faster than BLAST,
689
Bioinformatics 26, 2460-2461.
690
60. DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K.,
691
Huber, T., Dalevi, D., Hu, P., and Andersen, G. L. (2006) Greengenes, a
692
chimera-checked 16S rRNA gene database and workbench compatible with ARB,
693
Appl. Environ. Microbiol. 72, 5069-5072. 38
ACS Paragon Plus Environment
Page 38 of 40
Page 39 of 40 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
ACS Chemical Neuroscience
694
61. Lozupone, C., and Knight, R. (2005) UniFrac: a new phylogenetic method for
695
comparing microbial communities, Appl. Environ. Microbiol. 71, 8228-8235.
696
62. Lozupone, C. A., Hamady, M., Kelley, S. T., and Knight, R. (2007) Quantitative
697
and qualitative beta diversity measures lead to different insights into factors that
698
structure microbial communities, Appl. Environ. Microbiol. 73, 1576-1585.
699
63. Ramette, A. (2007) Multivariate analyses in microbial ecology, FEMS Microbiol.
700
Ecol. 62, 142-160.
701
64. Huson, D. H., Mitra, S., Ruscheweyh, H. J., Weber, N., and Schuster, S. C. (2011)
702
Integrative analysis of environmental sequences using MEGAN4, Genome Res. 21,
703
1552-1560.
704
65. Asnicar, F., Weingart, G., Tickle, T. L., Huttenhower, C., and Segata, N. (2015)
705
Compact graphical representation of phylogenetic data and metadata with GraPhlAn,
706
PeerJ 3, e1029.
707 708 709 710 711 712 713 714 715 39
ACS Paragon Plus Environment
ACS Chemical Neuroscience 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
716
The effects of baicalein on cortical pro-inflammatory cytokines and
717
the intestinal microbiome in senescence accelerated mouse prone 8
718
Li Gao†1*, Jiaqi Li†1,2, Yuzhi Zhou1, Xudong Huang3, Xuemei Qin1*, Guanhua Du1,4
For Table of Contents Use Only
40
ACS Paragon Plus Environment
Page 40 of 40