Effects of the Modulation of Microbiota on the Gastrointestinal Immune

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Effects of the modulation of microbiota on gastrointestinal immune system and bowel function Osamu Kanauchi, Akira Andoh, and Keiichi Mitsuyama J. Agric. Food Chem., Just Accepted Manuscript • Publication Date (Web): 27 Sep 2013 Downloaded from http://pubs.acs.org on September 27, 2013

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Journal of Agricultural and Food Chemistry

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Effects of the modulation of microbiota on the gastrointestinal immune system and

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bowel function (Review)

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Osamu Kanauchi1)*, Akira Andoh2), and Keiichi Mitsuyama3)

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1) Group Internal Audit Dept. Kirin Holdings Co., Ltd

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4-10-2 Nakano, Nakano-ku, Tokyo, 164-0001, Japan 2) Division of Mucosal Immunology, Graduate School of Medicine, Shiga University of Medical Science, Tsukinowa, Seta, Otsu, Shiga, 520-2192, Japan

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3) Inflammatory Bowel Disease Center, Division of Gastroenterology, Department of

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Medicine, Kurume University School of Medicine, Asahi-machi 67, Kurume

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830-0011, Japan

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*Corresponding author: Osamu Kanauchi, Ph D. (Tel: 81-3-6837-7056; Fax: 81-3-3386-6274; E-mail: [email protected])

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Abstract

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The gastrointestinal tract harbors a tremendous number and variety of commensal

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microbiota. The intestinal mucosa simultaneously absorbs essential nutrients and

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protects against detrimental antigens or pathogenic microbiota as the first line of

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defense. The beneficial interactions between the host and microbiota are key

20

requirements for host health.

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in the context of inflammatory diseases, it has recently become clear that this microbial

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environment has a beneficial role during normal homeostasis, by modulating the

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immune system or bowel motor function. Recent studies revealed that microbiota,

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including their metabolites, modulate key signaling pathways involved in the

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inflammation of the mucosa or the neurotransmitter system in the gut-brain axis.

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underlying molecular mechanisms of host–microbiota interactions are still unclear,

27

however, manipulation of microbiota by probiotics or prebiotics is becoming

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increasingly recognized as an important therapeutic option, especially for the treatment

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of the dysfunction or inflammation of the intestinal tract.

Although the gut microbiota has been previously studied

The

30 31

Key words: microbiota, inflammation, dysfunction, short chain fatty acids, dietary fiber,

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inflammatory bowel disease, irritable bowel syndrome, stress, serotonin, cognition

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Introduction

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During a normal lifetime, a human ingests about 60 tons of food, and this food all

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passes through the intestinal tract. Although food is indispensable, its passage also

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constitutes a threat to health, since food provides exposure to dietary antigens, viable

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microorganisms and bacterial products.

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line of defense to protect against pathogenic products (e.g. endotoxins, hydrogen sulfide,

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phenols, ammonia, indoles and so on) or microbiota, and also absorbs essential nutrients.

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At the same time, the intestinal tract acts as an ideal fermentor for microbiota.1

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microbiota in the gastrointestinal tract represents an ecosystem of the highest

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complexity.

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showed that at least 2000 bacterial species are harbored in the gastrointestinal tract of a

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single individual 2, 3.

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are many areas of host health that can be compromised when the microflora is

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drastically altered 4.

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imbalances in the body, has been associated with various illnesses (e.g. inflammatory

49

bowel disease (IBD) or irritable bowel syndrome (IBS)).

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In the intestinal tract, the mucosa is the first

The

A comprehensive culture-independent phylogenetic analysis of microbes

The microflora plays many critical roles in the body; thus, there

Dysbiosis, which is defined as a condition with microbial

In addition, metagenomic approaches have provided new insights into the 5-7

51

microbiota and the relationship between the microbiota and host

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metagenomic carriage of metabolic pathways was relatively stable among individuals in

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different community structures, the human microbiome project consortium showed that

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the racial background had a strong association with the microbiota 5. It has been

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reported that the early stage of life, within three years after birth, strongly affects the

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maturation of the microbiome in individuals 7. Humans share at least 160 species of

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microbiota which have the potential to affect the fundamental uptake of energy from the

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.

Although

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gastrointestinal tract, however, there are significant differences in the microbial clusters

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between healthy volunteers and patients with various diseases, such as IBD 8.

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Recently, many reviews have been published regarding the relationship between

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dysbiosis and the mucosal immune system or human health.

In developing countries,

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it has been reported that the nutritional value of food is influenced by the status of the

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gut microbial community 9. As is well known, malnutrition causes serious problems,

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and nutrient deficiencies are reported to cause impaired intestinal mucosal barrier

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function, which is associated with several defects in the innate and adaptive immune

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systems, which can lead to lethal diarrheal infectious illnesses, especially for children

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and infants.

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pathogenesis, and the diet may shape the gut microbial community and its functions 9.

It is speculated that dysbiosis contributes to the disease risk and

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On the other hand, the "hygiene hypothesis" is also known well in Western

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countries, and posits that individuals raised in a sanitary environment are more likely to

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develop IBD.

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childhood was associated with the risk for IBD 10. Interestingly, exposure to a variety of

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microorganisms early in life could result in the colonization of the intestine with

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microbiota that can respond more efficiently to an episode of gastroenteritis and

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post-infectious IBS

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gastrointestinal tract diseases, especially IBD and IBS.

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The relationship between gastrointestinal dysfunction and microbiota

In a population-based study, it was reported that the status of hygiene in

11

. In this review, we focus on the role of microbiota in

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The diversity of the colonic microbiota in IBD patients is distinct from that of

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healthy subjects 12, consisting of fewer sequences of the phylum Bacteroidetes and the

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family Lachnospiraceae of the phylum Firmicutes, and more sequences are

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representatives of the phylum Proteobacteria and the Bacillus subgroup.

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In addition,

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Spiller noted that, in comparison to control subjects, the microbiota in IBS patients

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displayed abnormalities related to malfermentation in the lower intestine and a change

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in transit time

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found to play an increasingly important role in the mucosal immune function

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(inflammation), motor function and mucosal barrier function in both IBD and IBS

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Immune cells recognize microbiota through the identification of unique prokaryotic

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molecular motifs to prevent the invasion of pathogenic microbiota and to regulate the

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immune response to commensal bacteria 15. It is well known that the mucosal immune

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cells recognize the pathogen associated molecular patterns (PAMPs) by their respective

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toll like receptors (TLRs), then initiate protective sequences including an inflammatory

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response via the rapid induction of myeloid-differentiation factor 88 (MyD88) and

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nuclear factor-kappa B (NF-κB)-dependent signaling pathways. This results in the

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expression of a broad array of pro-inflammatory cytokines, adhesion molecules and

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chemokines. In intestinal epithelial cells, PAMPs have also been shown to lead to the

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promotion of barrier enhancement, epithelial repair and the secretion of anti-microbial

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peptides, rather than overt inflammatory responses 16.

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. Furthermore, the intestinal microbiota and their products have been

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.

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It is beyond a shadow of doubt that microbiota play an important role in the

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pathogenesis of gastrointestinal diseases, since the colitis in transgenic and knockout

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mutant murine models cannot occur when these lines are maintained in a germ-free

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environment 17, 18. Germ-free mice are also reported to display alterations in their stress

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response and central neurochemistry in comparison to conventional mice 19, in addition

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to altered gastrointestinal transit time 20. These data may indicate that specific control of

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the microbiota may be a useful strategy for modulating the co-morbid aspects of

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gastrointestinal disorders.

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The role of microbiota and related metabolites in IBD, and potential therapeutic

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strategies

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Probiotics are non-pathogenic live microorganisms that are administered to alter

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the intestinal microbiota and confer a beneficial effect on health 21. It has been reported

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that probiotics have protective effects against intestinal inflammation, including

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enhancement of the epithelial barrier function, modulation of the mucosal immune

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system and alteration of the intestinal microbiota.

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distinguished from intestinal tract immediately, it is speculated that the effects are

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transient due to their almost immediate exclusion

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have traditionally been the most common candidate probiotics, and nonpathogenic

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Escherichia coli, Saccharomyces boulardii and their mixture (e.g. VSL#3) have also

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been used to produce probiotic effects

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the therapeutic potential and actual clinical outcomes of probiotic treatment in IBD 24.

Since exogenous probiotics are

22

. Lactobacilli and Bifidobacteria

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. However, there is still discrepancy between

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Since the pathogenesis of IBD includes genetic, microbial and environmental

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factors, and since this leads to heterogeneous phenotypes in patient subsets that are

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uniquely responsive to specific microbial manipulations, the clinical outcome of

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probiotic treatment has shown relatively large variations

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trials of probiotics in IBD patients showed significant efficacy

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that a meta-analysis of IBD treatment by probiotics did not show any significant

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therapeutic merit 26, 27.

24

. Although some clinical 25

, it was also reported

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Prebiotics are non-digestible food constituents given to benefit the host by

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selectively stimulating the growth or activity of one or a limited number of bacterial

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species already resident in the colon

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intestinal microbiota in the host. The beneficial microbiota are unique to each host, and

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. Prebiotics alter the composition or balance of

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prebiotics can help provide increased resistance to gut infections and may also have

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immunomodulatory effects. It has been reported that prebiotics could not be absorbed

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directly into the epithelium, and were instead converted to other metabolites, including

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short chain fatty acids. Prebiotics also act as carbon and energy sources for bacteria

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growing in the colon, where they are fermented to form short-chain fatty acids (SCFAs).

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In addition to its trophic and protective functions, SCFAs, including butyrate, have been

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reported to attenuate inflammation in the colonic epithelium 29.

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Manichanh et al. previously indicated that there was a decrease in the abundance

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and biodiversity of intestinal bacteria within the dominant phylum Firmicutes

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(especially Faecalibacterium prausnitzii) in patients with recurrent Crohn’s disease

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(CD)30.

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disease using a commensal bacterial product. Counterbalanced the dysbiosis using this

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deficient commensal bacterium as a probiotic in CD patients could be beneficial

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Interestingly, the prophylactic effect on colitis was stronger when the supernatant of F.

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prausnitzii was used than when F. prausnitzii itself was used. Although the detailed

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mechanism(s) underlying the effects of this microbe are still unclear, the supernatant

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potently downregulated the NF-κB activation 31.

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Recently, Sokol et al. reported a unique therapeutic concept for Crohn’s

Recently,

β2-1

fructans

from

chicory

root

were

shown

to

31

.

have

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immunomodulatory capacity, mainly occurring through TLR2 and its adaptor, MyD88,

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via the NF-κB pathway.

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speculated that the β2-1 fructans directly stimulate TLR2 ligation due to its similarity to

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β-glucan (the normal ligand of TLR2).

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increased the IL-10/IL-12 ratio (anti-inflammatory)32.

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Although the detailed mechanism is still unclear, it is

As a result, these fructans significantly

IBD is a form of chronic intestinal inflammation that arises due to overly 7 ACS Paragon Plus Environment

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aggressive cellular immune responses to a subset of luminal bacteria, most likely

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commensal bacteria. Therefore, therapies targeted at restoring balance to the intestinal

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microenvironment are becoming rational options.

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probiotics and/or prebiotics, are now considered “nutraceuticals”, which are defined as

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foods or food components that provide medical or health benefits, including the

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prevention and/or treatment of disease 33, 34. Due to their low risk of adverse effects and

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the desire of patients wishing to use more natural physiological approaches to treating

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IBD, interest in such treatments has been increasing 35, 36.

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Microbial therapies, including

In addition, unique approaches to IBD therapy via microbiota have been reported

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37, 38

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or peptides (Pro-Glu-Leu) in the colonic mucosa, which were shown to increase mucin

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production and mucosal wound healing, and to modulate the microbiota by producing

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epithelial anti-bacterial peptides, including defensin.

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. Those studies focused on the role of specific amino acids (Thr, Ser, Pro and Cys)

Finally, antibiotics have proven to be efficacious for inducing and maintaining 39-41

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IBD remission, since antibiotics alter the pattern of intestinal bacteria

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it is difficult to use antibiotics for a long period of time due to risk of developing

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microbial resistance and because of the side effects.

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restoring balance to the intestinal microenvironment using probiotics, prebiotics and

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synbiotics is an extension of this concept.

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lack of toxicity, and patients who wish to use more natural physiological approaches to

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treating IBD have expressed enthusiasm towards this approach.

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The role of microbiota in IBS and related therapeutic strategies

.

However,

Therefore, therapy targeted at

These approaches are appealing due to their

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IBS is a common functional bowel disorder, which is characterized by recurrent

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abdominal pain and altered bowel habits, without structural abnormalities of the bowel

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42, 43

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(including microbiota and allergic substances), psychiatric disorders and gastroenteritis

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(very mild inflammation) are frequently suggested as the causes of disease in IBS

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patients

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but are not commonly used for treatment due to their low cost-effectiveness in routine

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practice.

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5-hydroxytryptamine (5HT), and this neurotransmitter is known to be a modulator of

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the gastrointestinal physiological function and gut-brain axis that is recognized by

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several receptors, serotonergic agents (5HT-3 antagonists or 5HT-4 agonists) can be

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used for the treatment of IBD 45.

. Although the pathogenesis of IBS remains unclear, food-related risk factors

44

. Currently, cognitive-behavioral therapy and anti-depressants are available,

Since

the

gastrointestinal

tract

contains

massive

amounts

of

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In Japan, the major medical therapies used for IBS are conventional bowel

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movement modulators (laxatives for constipation-dominant IBS, anti-diarrheal agents

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for diarrhea-dominant IBS, polycarbophil Ca for alternative type IBS).

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incidence of IBS after infective gastroenteritis has been reported, which is logical, since

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infective gastroenteritis generally reduces the commensal microbiota, which produce

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metabolites such as SCFA, and dysbiosis may be caused by the use of antibiotics

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In addition, recent findings suggest that changes in the microbiota in IBS models due to

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probiotics and/or prebiotics are related to improvements in the colonic motor function.

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Of note, SCFAs derived from dietary fiber have been reported to potently prevent the

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development of colonic mucosal 5HT receptor hypersensitivity 47-49.

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A high

46, 47

.

Recently, it was reported that stress is one of the key risk factors, and that the 50, 51

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microbiota play an important role in the pathogenesis of IBS

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previously reported that space-flight, a condition inducing serious stress, decreased the

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numbers of three different kinds of fecal Lactobacilli, although dietary factors and other

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. In addition, it was

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conditions might also have contributed to the change in microbiota in these subjects 52.

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Dysbiosis caused by infection, dietary changes or overuse of antibiotics is reported to

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produce low grade inflammation, as observed in a subset of IBS patients 53. On the other

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hand, changes in the gastrointestinal transit time may also contribute to the

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abnormalities observed in enteric microbiota metabolic activity, including fermentation

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processes 54. The microbiota of the gastrointestinal tract form a complex ecosystem, and

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the use of probiotics or prebiotics has been reported to change the diversity and quantity

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of microbiota in IBS patients 55.

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Although the mechanisms remain unclear, it has been reported that probiotics 56

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change the microbiota in IBS patients and improve the mucosal immune system

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motor function of the bowel 57. These effects subsequently result in positive changes in

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fermentation and visceral sensitivity.

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to alleviate IBS symptoms, mainly through the modulation of the microbiota and the

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increase of SCFAs production

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provide specific substrates ready to be metabolized by the beneficial gut microbiota,

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thereby stimulating their growth and/or activity

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source of SCFA that provide energy to the epithelium and exhibit anti-inflammatory

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properties 61.

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IBS were described 62. Some probiotics have considerable potential in the management

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of IBS, although the benefits are strain-specific

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probiotic strain is one of the most important factors that needs to be considered for their

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clinical use 64. Regarding the effects of prebiotics on IBS, the evidence is limited, since

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there have not been enough trials performed to evaluate their effects 57, 62, 65.

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The mechanism(s) underlying the microbial modulation of the mucosal immune

58

.

and

Furthermore, prebiotics have also been reported

Indeed, prebiotics as indigestible food constituents

59, 60

.

Prebiotics are utilized as one

In a recent systematic review, the effects of probiotics and prebiotics on

63

.

Therefore, the selection of the

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Journal of Agricultural and Food Chemistry

system induced by probiotics or prebiotics

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Prebiotics and their microbial metabolites, including SCFAs, are reported to have

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several beneficial effects on the mucosa, including metabolic (anti-inflammatory

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effects), trophic (epithelial energy) and protective (absorbing bile acids) functions in

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IBD

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symptoms of IBD by manipulating the microbiota and modulating the mucosal immune

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function 66.

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of nuclear factor-kappa B (NF-κB) or phosphorylation of the signal transducer and

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activator of transcription 3 (STAT-3).67 Interestingly, modulation of the microbiota by

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prebiotics was also shown to change the characteristics of naïve T cells

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(CD4+CD45RBhigh) and this characteristic is transferable to another host 68.

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61

. Probiotics have also been reported to have a potent ability to attenuate the

In particular, butyrate has a unique ability to downregulate the activation

Briefly, this naïve T cell transfer model is helpful for understanding the initiation, 69

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as well as regulation, of chronic colitis

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immunodeficient recipients, which lack a regulatory T cell system, chronic colitis

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develops as a result of enteric antigen-driven activation and polarization of naive T cells

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to disease-producing Th1 cells in the colon, where enteric bacterial antigens gain access

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to the secondary lymphoid tissue draining to the GALT, and naïve T cells interact with

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antigen-presenting cells to become activated Th1 cells with a disease-producing

244

phenotype 69, 70.

245

. Since SCID or RAG knock-out mice are

In our previous study, prebiotic enzyme-treated rice fiber (ERF) showed

246

preventive effects on colitis in this T cell transferred model.

After they encountered

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and responded to their cognate antigens, T cells acquired immune function, furthermore,

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this unique characteristic was inherited by severe combined immune deficient mice

249

following splenocyte transplantation.

In that study, ERF significantly changed the

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SCFA production pattern and microbial profile.

Although the two groups of mice

251

(control group and ERF group) were fed same diet (AIN93G), these phenotypes were

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distinct between the two groups, and the ERF-derived CD4+ T cells had significantly

253

attenuated inflammatory parameters 61.

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Butyrate has anti-neoplastic effects at physiological concentrations due to its

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effects on cell cycle regulation, leading to an increase of apoptosis in colonic tumor cell

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lines 71 as well as anti-inflammatory effects 72. Butyrate has also been shown to suppress

257

TLR4 gene expression 73. Lipopolysaccharide is a ligand of TLR4, which induces the

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degradation of IκBα, resulting in the induction of pro-inflammatory cytokines via the

259

transmigration of NF-κB.

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due to prebiotic fermentation may be explained by this downregulation of TLR4 mRNA

261

expression.

262

colitis patients, and TLR4 was reported to detect gram negative microbiota and to

263

activate the innate immune system 74. Furthermore, a recent study revealed that TLR4

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had the ability to regulate the cyclooxygenase-2 (COX2) expression in a chronic colon

265

cancer model via NF-κB expression 74.

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germinated barley foodstuff (GBF), decreased the TLR4 and COX2 expression,

267

compared with that observed in the control group 29.

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One of the anti-inflammatory actions mediated by butyrate

In a clinical study, TLR4 was reported to be upregulated in ulcerative

In our previous study, prebiotics, including

Probiotics can modulate or change the microbiota directly, while prebiotics

269

cannot.

However, prebiotics have a unique characteristic; the fecal bulking effect (in

270

other words, a high water holding capacity). McBurney focused on the relationship

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between the bulking effects and changes in microbiota using the SCFA production as a

272

marker. That study revealed that high bulking fiber increased the SCFA production.

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Therefore, changes in the physical condition (bulking effects) in the lower intestinal 12 ACS Paragon Plus Environment

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tract may also contribute to the composition of microbiota 75.

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The mechanism(s) underlying the microbial modulation of the bowel function

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induced by probiotics or prebiotics

277

To date, there have been three important mechanisms suggested to underlie how

278

microbiota influence the gut motor function.

279

products of bacterial fermentation may modulate the gut motor function.

280

changes in intrinsic intestinal neuroendocrine factors may affect the central nervous

281

system. Finally, mediators released by the gut immune response may lead to the change

282

in function 57, 76.

283

First, bacterial substances or the end Second,

Regarding the first point, the SCFA described in this review and bacterial

284

deconjugated bile salts 77 were shown to modulate the bowel motor function.

285

production resulting from the fermentation of unabsorbed carbohydrates is also an

286

important factor.

287

inhibit motor activity

288

described to modulate the gut motor function in this review.

289

reported that dysbiosis due to antibiotic administration can increase the substance P

290

immunoreactivity and induce hypersensitivity in the colon 79. Certain commensal strains

291

have the capacity to modulate intestinal pain through the induction of opioid receptors

292

80

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The gas

Indeed, the overproduction of methane has been shown to directly 78

. With regard to the second point, 5HT has already been Furthermore, it has been

. A post-infectious IBS model was used to study the relationship between the

294

immune response and motor function.

Akiho et al. reviewed the role of many kinds of

295

cytokines and chemokines, as well as the imbalance of Th1/Th2 or Th17/Treg in the

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malfunction of IBS based on the low grade inflammation theory and showed the

297

increase of proinflammatory cytokines production and abnormality of contractility 81.

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It was reported that a high concentration of SCFAs in the colon following

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prebiotic ERF treatment prevented the enhancement of colonic motility under restraint

300

stress due to suppression of 5HT secretion, compared with the control and

301

polycarbophil Ca groups

302

restraint stress, and also maintains good fermentation under stress-free control

303

conditions.

304

cells is stimulated by mucosal stroking, microbiota and SCFAs, and that the presence of

305

mechanical stimuli is the most important factor affecting the 5HT release 82. Owing to

306

their high water-holding capacity and lattice-like physical structure, prebiotic ERF

307

might attenuate the colonic mucosal 5HT release during restraint stress compared with

308

the control condition.

309

strongest risk factors for the development of IBS.

310

to play an important role in persistent gut dysfunction by inducing an increase in

311

intestinal permeability and activating the mucosal immune system 57, 83

312

Future perspective of prebiotic and probiotic treatment for IBD and IBS

58.

Interestingly, ERF prevents abnormal fermentation under

Another study showed that the 5HT released from enterochromaffin (EC)

Finally, acute gastroenteritis is reported to be one of the Therefore, transient infection seems

313

Although the mechanisms underlying IBD and IBS are quite different, both

314

diseases have a common pathogenesis, an overwhelming immune response, in some

315

subtypes

316

which include abnormal bowel movements and abdominal pain

317

review, microbiota and the regulation of the diversity and number of microbiota, play an

318

important role in the pathogenesis of both IBS and IBD by pleiotropic mechanisms,

319

including modulation of the immune system, bowel motor-function, CNS and bulking

320

effects (water holding capacity and absorption of bile acids).

321

for IBS and IBD that modulate the microbiota are associated with a low incidence of

84, 85

.

In addition, IBS and IBD show heterogeneous clinical symptoms,

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86

.

As shown in this

Therapeutic approaches

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adverse effects (if any).

323

dysfunction or inflammation, treatment using these approaches is considered to be

324

highly safe and beneficial (Figure 1).

325

Therefore, for the patients with chronic gastrointestinal

In addition, it has been reported that modulating the microbiota using prebiotics 87

326

or probiotics can improve human health in several ways

327

reviewed the unique effects of gut microbiota on the morphogenesis of the intestinal

328

tract and remodeling of the vascular pattern, adiposity and organ homeostasis 57, 88.

329

Although further detailed studies are required to provide deeper insight into the

330

mechanisms of action, nutraceuticals (probiotics, prebiotics and other agents) may also

331

be helpful for modulating the colonic environment in healthy humans, in addition to

332

patients.

333 334

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Acknowledgements

336

The authors are deeply appreciative to Mr. Motoyasu Ishihara (Kirin Holdings,

337

Director) for his encouragement and permission to submit this manuscript, and to Ms.

338

Noriko Kuriyama (Kirin Holdings) for the grammatical corrections. The authors declare

339

no competing financial interests.

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Figure 1 caption

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The concept of modulating the microbiota and potential remedies for gastrointestinal

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631 Figure 1

Modulators of Microbiota Probiotics Prebiotics Antibiotics

IBS

Bulking agents Amino acids Inflammation

Motility & Cognition Central nervous system

5HT Cytokines Chemokines Bowel movement

Wound healing

IBD

By dysbiosis Overwhelming immune system, Abnormal bowel movement l nta me ro n o rs i v En Fact

Dysbiosis

Ge n Fac etic tor s

Please print this figure in color

30 ACS Paragon Plus Environment

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