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Effects of the modulation of microbiota on gastrointestinal immune system and bowel function Osamu Kanauchi, Akira Andoh, and Keiichi Mitsuyama J. Agric. Food Chem., Just Accepted Manuscript • Publication Date (Web): 27 Sep 2013 Downloaded from http://pubs.acs.org on September 27, 2013
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Effects of the modulation of microbiota on the gastrointestinal immune system and
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bowel function (Review)
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Osamu Kanauchi1)*, Akira Andoh2), and Keiichi Mitsuyama3)
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1) Group Internal Audit Dept. Kirin Holdings Co., Ltd
6 7 8
4-10-2 Nakano, Nakano-ku, Tokyo, 164-0001, Japan 2) Division of Mucosal Immunology, Graduate School of Medicine, Shiga University of Medical Science, Tsukinowa, Seta, Otsu, Shiga, 520-2192, Japan
9
3) Inflammatory Bowel Disease Center, Division of Gastroenterology, Department of
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Medicine, Kurume University School of Medicine, Asahi-machi 67, Kurume
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830-0011, Japan
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*Corresponding author: Osamu Kanauchi, Ph D. (Tel: 81-3-6837-7056; Fax: 81-3-3386-6274; E-mail:
[email protected])
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Abstract
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The gastrointestinal tract harbors a tremendous number and variety of commensal
17
microbiota. The intestinal mucosa simultaneously absorbs essential nutrients and
18
protects against detrimental antigens or pathogenic microbiota as the first line of
19
defense. The beneficial interactions between the host and microbiota are key
20
requirements for host health.
21
in the context of inflammatory diseases, it has recently become clear that this microbial
22
environment has a beneficial role during normal homeostasis, by modulating the
23
immune system or bowel motor function. Recent studies revealed that microbiota,
24
including their metabolites, modulate key signaling pathways involved in the
25
inflammation of the mucosa or the neurotransmitter system in the gut-brain axis.
26
underlying molecular mechanisms of host–microbiota interactions are still unclear,
27
however, manipulation of microbiota by probiotics or prebiotics is becoming
28
increasingly recognized as an important therapeutic option, especially for the treatment
29
of the dysfunction or inflammation of the intestinal tract.
Although the gut microbiota has been previously studied
The
30 31
Key words: microbiota, inflammation, dysfunction, short chain fatty acids, dietary fiber,
32
inflammatory bowel disease, irritable bowel syndrome, stress, serotonin, cognition
33
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Introduction
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During a normal lifetime, a human ingests about 60 tons of food, and this food all
36
passes through the intestinal tract. Although food is indispensable, its passage also
37
constitutes a threat to health, since food provides exposure to dietary antigens, viable
38
microorganisms and bacterial products.
39
line of defense to protect against pathogenic products (e.g. endotoxins, hydrogen sulfide,
40
phenols, ammonia, indoles and so on) or microbiota, and also absorbs essential nutrients.
41
At the same time, the intestinal tract acts as an ideal fermentor for microbiota.1
42
microbiota in the gastrointestinal tract represents an ecosystem of the highest
43
complexity.
44
showed that at least 2000 bacterial species are harbored in the gastrointestinal tract of a
45
single individual 2, 3.
46
are many areas of host health that can be compromised when the microflora is
47
drastically altered 4.
48
imbalances in the body, has been associated with various illnesses (e.g. inflammatory
49
bowel disease (IBD) or irritable bowel syndrome (IBS)).
50
In the intestinal tract, the mucosa is the first
The
A comprehensive culture-independent phylogenetic analysis of microbes
The microflora plays many critical roles in the body; thus, there
Dysbiosis, which is defined as a condition with microbial
In addition, metagenomic approaches have provided new insights into the 5-7
51
microbiota and the relationship between the microbiota and host
52
metagenomic carriage of metabolic pathways was relatively stable among individuals in
53
different community structures, the human microbiome project consortium showed that
54
the racial background had a strong association with the microbiota 5. It has been
55
reported that the early stage of life, within three years after birth, strongly affects the
56
maturation of the microbiome in individuals 7. Humans share at least 160 species of
57
microbiota which have the potential to affect the fundamental uptake of energy from the
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.
Although
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gastrointestinal tract, however, there are significant differences in the microbial clusters
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between healthy volunteers and patients with various diseases, such as IBD 8.
60
Recently, many reviews have been published regarding the relationship between
61
dysbiosis and the mucosal immune system or human health.
In developing countries,
62
it has been reported that the nutritional value of food is influenced by the status of the
63
gut microbial community 9. As is well known, malnutrition causes serious problems,
64
and nutrient deficiencies are reported to cause impaired intestinal mucosal barrier
65
function, which is associated with several defects in the innate and adaptive immune
66
systems, which can lead to lethal diarrheal infectious illnesses, especially for children
67
and infants.
68
pathogenesis, and the diet may shape the gut microbial community and its functions 9.
It is speculated that dysbiosis contributes to the disease risk and
69
On the other hand, the "hygiene hypothesis" is also known well in Western
70
countries, and posits that individuals raised in a sanitary environment are more likely to
71
develop IBD.
72
childhood was associated with the risk for IBD 10. Interestingly, exposure to a variety of
73
microorganisms early in life could result in the colonization of the intestine with
74
microbiota that can respond more efficiently to an episode of gastroenteritis and
75
post-infectious IBS
76
gastrointestinal tract diseases, especially IBD and IBS.
77
The relationship between gastrointestinal dysfunction and microbiota
In a population-based study, it was reported that the status of hygiene in
11
. In this review, we focus on the role of microbiota in
78
The diversity of the colonic microbiota in IBD patients is distinct from that of
79
healthy subjects 12, consisting of fewer sequences of the phylum Bacteroidetes and the
80
family Lachnospiraceae of the phylum Firmicutes, and more sequences are
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representatives of the phylum Proteobacteria and the Bacillus subgroup.
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In addition,
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Spiller noted that, in comparison to control subjects, the microbiota in IBS patients
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displayed abnormalities related to malfermentation in the lower intestine and a change
84
in transit time
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found to play an increasingly important role in the mucosal immune function
86
(inflammation), motor function and mucosal barrier function in both IBD and IBS
87
Immune cells recognize microbiota through the identification of unique prokaryotic
88
molecular motifs to prevent the invasion of pathogenic microbiota and to regulate the
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immune response to commensal bacteria 15. It is well known that the mucosal immune
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cells recognize the pathogen associated molecular patterns (PAMPs) by their respective
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toll like receptors (TLRs), then initiate protective sequences including an inflammatory
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response via the rapid induction of myeloid-differentiation factor 88 (MyD88) and
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nuclear factor-kappa B (NF-κB)-dependent signaling pathways. This results in the
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expression of a broad array of pro-inflammatory cytokines, adhesion molecules and
95
chemokines. In intestinal epithelial cells, PAMPs have also been shown to lead to the
96
promotion of barrier enhancement, epithelial repair and the secretion of anti-microbial
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peptides, rather than overt inflammatory responses 16.
13
. Furthermore, the intestinal microbiota and their products have been
14
.
98
It is beyond a shadow of doubt that microbiota play an important role in the
99
pathogenesis of gastrointestinal diseases, since the colitis in transgenic and knockout
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mutant murine models cannot occur when these lines are maintained in a germ-free
101
environment 17, 18. Germ-free mice are also reported to display alterations in their stress
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response and central neurochemistry in comparison to conventional mice 19, in addition
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to altered gastrointestinal transit time 20. These data may indicate that specific control of
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the microbiota may be a useful strategy for modulating the co-morbid aspects of
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gastrointestinal disorders.
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The role of microbiota and related metabolites in IBD, and potential therapeutic
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strategies
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Probiotics are non-pathogenic live microorganisms that are administered to alter
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the intestinal microbiota and confer a beneficial effect on health 21. It has been reported
110
that probiotics have protective effects against intestinal inflammation, including
111
enhancement of the epithelial barrier function, modulation of the mucosal immune
112
system and alteration of the intestinal microbiota.
113
distinguished from intestinal tract immediately, it is speculated that the effects are
114
transient due to their almost immediate exclusion
115
have traditionally been the most common candidate probiotics, and nonpathogenic
116
Escherichia coli, Saccharomyces boulardii and their mixture (e.g. VSL#3) have also
117
been used to produce probiotic effects
118
the therapeutic potential and actual clinical outcomes of probiotic treatment in IBD 24.
Since exogenous probiotics are
22
. Lactobacilli and Bifidobacteria
23
. However, there is still discrepancy between
119
Since the pathogenesis of IBD includes genetic, microbial and environmental
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factors, and since this leads to heterogeneous phenotypes in patient subsets that are
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uniquely responsive to specific microbial manipulations, the clinical outcome of
122
probiotic treatment has shown relatively large variations
123
trials of probiotics in IBD patients showed significant efficacy
124
that a meta-analysis of IBD treatment by probiotics did not show any significant
125
therapeutic merit 26, 27.
24
. Although some clinical 25
, it was also reported
126
Prebiotics are non-digestible food constituents given to benefit the host by
127
selectively stimulating the growth or activity of one or a limited number of bacterial
128
species already resident in the colon
129
intestinal microbiota in the host. The beneficial microbiota are unique to each host, and
28
. Prebiotics alter the composition or balance of
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prebiotics can help provide increased resistance to gut infections and may also have
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immunomodulatory effects. It has been reported that prebiotics could not be absorbed
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directly into the epithelium, and were instead converted to other metabolites, including
133
short chain fatty acids. Prebiotics also act as carbon and energy sources for bacteria
134
growing in the colon, where they are fermented to form short-chain fatty acids (SCFAs).
135
In addition to its trophic and protective functions, SCFAs, including butyrate, have been
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reported to attenuate inflammation in the colonic epithelium 29.
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Manichanh et al. previously indicated that there was a decrease in the abundance
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and biodiversity of intestinal bacteria within the dominant phylum Firmicutes
139
(especially Faecalibacterium prausnitzii) in patients with recurrent Crohn’s disease
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(CD)30.
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disease using a commensal bacterial product. Counterbalanced the dysbiosis using this
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deficient commensal bacterium as a probiotic in CD patients could be beneficial
143
Interestingly, the prophylactic effect on colitis was stronger when the supernatant of F.
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prausnitzii was used than when F. prausnitzii itself was used. Although the detailed
145
mechanism(s) underlying the effects of this microbe are still unclear, the supernatant
146
potently downregulated the NF-κB activation 31.
147
Recently, Sokol et al. reported a unique therapeutic concept for Crohn’s
Recently,
β2-1
fructans
from
chicory
root
were
shown
to
31
.
have
148
immunomodulatory capacity, mainly occurring through TLR2 and its adaptor, MyD88,
149
via the NF-κB pathway.
150
speculated that the β2-1 fructans directly stimulate TLR2 ligation due to its similarity to
151
β-glucan (the normal ligand of TLR2).
152
increased the IL-10/IL-12 ratio (anti-inflammatory)32.
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Although the detailed mechanism is still unclear, it is
As a result, these fructans significantly
IBD is a form of chronic intestinal inflammation that arises due to overly 7 ACS Paragon Plus Environment
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aggressive cellular immune responses to a subset of luminal bacteria, most likely
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commensal bacteria. Therefore, therapies targeted at restoring balance to the intestinal
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microenvironment are becoming rational options.
157
probiotics and/or prebiotics, are now considered “nutraceuticals”, which are defined as
158
foods or food components that provide medical or health benefits, including the
159
prevention and/or treatment of disease 33, 34. Due to their low risk of adverse effects and
160
the desire of patients wishing to use more natural physiological approaches to treating
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IBD, interest in such treatments has been increasing 35, 36.
162
Microbial therapies, including
In addition, unique approaches to IBD therapy via microbiota have been reported
163
37, 38
164
or peptides (Pro-Glu-Leu) in the colonic mucosa, which were shown to increase mucin
165
production and mucosal wound healing, and to modulate the microbiota by producing
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epithelial anti-bacterial peptides, including defensin.
167
. Those studies focused on the role of specific amino acids (Thr, Ser, Pro and Cys)
Finally, antibiotics have proven to be efficacious for inducing and maintaining 39-41
168
IBD remission, since antibiotics alter the pattern of intestinal bacteria
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it is difficult to use antibiotics for a long period of time due to risk of developing
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microbial resistance and because of the side effects.
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restoring balance to the intestinal microenvironment using probiotics, prebiotics and
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synbiotics is an extension of this concept.
173
lack of toxicity, and patients who wish to use more natural physiological approaches to
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treating IBD have expressed enthusiasm towards this approach.
175
The role of microbiota in IBS and related therapeutic strategies
.
However,
Therefore, therapy targeted at
These approaches are appealing due to their
176
IBS is a common functional bowel disorder, which is characterized by recurrent
177
abdominal pain and altered bowel habits, without structural abnormalities of the bowel
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42, 43
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(including microbiota and allergic substances), psychiatric disorders and gastroenteritis
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(very mild inflammation) are frequently suggested as the causes of disease in IBS
181
patients
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but are not commonly used for treatment due to their low cost-effectiveness in routine
183
practice.
184
5-hydroxytryptamine (5HT), and this neurotransmitter is known to be a modulator of
185
the gastrointestinal physiological function and gut-brain axis that is recognized by
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several receptors, serotonergic agents (5HT-3 antagonists or 5HT-4 agonists) can be
187
used for the treatment of IBD 45.
. Although the pathogenesis of IBS remains unclear, food-related risk factors
44
. Currently, cognitive-behavioral therapy and anti-depressants are available,
Since
the
gastrointestinal
tract
contains
massive
amounts
of
188
In Japan, the major medical therapies used for IBS are conventional bowel
189
movement modulators (laxatives for constipation-dominant IBS, anti-diarrheal agents
190
for diarrhea-dominant IBS, polycarbophil Ca for alternative type IBS).
191
incidence of IBS after infective gastroenteritis has been reported, which is logical, since
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infective gastroenteritis generally reduces the commensal microbiota, which produce
193
metabolites such as SCFA, and dysbiosis may be caused by the use of antibiotics
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In addition, recent findings suggest that changes in the microbiota in IBS models due to
195
probiotics and/or prebiotics are related to improvements in the colonic motor function.
196
Of note, SCFAs derived from dietary fiber have been reported to potently prevent the
197
development of colonic mucosal 5HT receptor hypersensitivity 47-49.
198
A high
46, 47
.
Recently, it was reported that stress is one of the key risk factors, and that the 50, 51
199
microbiota play an important role in the pathogenesis of IBS
200
previously reported that space-flight, a condition inducing serious stress, decreased the
201
numbers of three different kinds of fecal Lactobacilli, although dietary factors and other
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. In addition, it was
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conditions might also have contributed to the change in microbiota in these subjects 52.
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Dysbiosis caused by infection, dietary changes or overuse of antibiotics is reported to
204
produce low grade inflammation, as observed in a subset of IBS patients 53. On the other
205
hand, changes in the gastrointestinal transit time may also contribute to the
206
abnormalities observed in enteric microbiota metabolic activity, including fermentation
207
processes 54. The microbiota of the gastrointestinal tract form a complex ecosystem, and
208
the use of probiotics or prebiotics has been reported to change the diversity and quantity
209
of microbiota in IBS patients 55.
210
Although the mechanisms remain unclear, it has been reported that probiotics 56
211
change the microbiota in IBS patients and improve the mucosal immune system
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motor function of the bowel 57. These effects subsequently result in positive changes in
213
fermentation and visceral sensitivity.
214
to alleviate IBS symptoms, mainly through the modulation of the microbiota and the
215
increase of SCFAs production
216
provide specific substrates ready to be metabolized by the beneficial gut microbiota,
217
thereby stimulating their growth and/or activity
218
source of SCFA that provide energy to the epithelium and exhibit anti-inflammatory
219
properties 61.
220
IBS were described 62. Some probiotics have considerable potential in the management
221
of IBS, although the benefits are strain-specific
222
probiotic strain is one of the most important factors that needs to be considered for their
223
clinical use 64. Regarding the effects of prebiotics on IBS, the evidence is limited, since
224
there have not been enough trials performed to evaluate their effects 57, 62, 65.
225
The mechanism(s) underlying the microbial modulation of the mucosal immune
58
.
and
Furthermore, prebiotics have also been reported
Indeed, prebiotics as indigestible food constituents
59, 60
.
Prebiotics are utilized as one
In a recent systematic review, the effects of probiotics and prebiotics on
63
.
Therefore, the selection of the
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Journal of Agricultural and Food Chemistry
system induced by probiotics or prebiotics
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Prebiotics and their microbial metabolites, including SCFAs, are reported to have
228
several beneficial effects on the mucosa, including metabolic (anti-inflammatory
229
effects), trophic (epithelial energy) and protective (absorbing bile acids) functions in
230
IBD
231
symptoms of IBD by manipulating the microbiota and modulating the mucosal immune
232
function 66.
233
of nuclear factor-kappa B (NF-κB) or phosphorylation of the signal transducer and
234
activator of transcription 3 (STAT-3).67 Interestingly, modulation of the microbiota by
235
prebiotics was also shown to change the characteristics of naïve T cells
236
(CD4+CD45RBhigh) and this characteristic is transferable to another host 68.
237
61
. Probiotics have also been reported to have a potent ability to attenuate the
In particular, butyrate has a unique ability to downregulate the activation
Briefly, this naïve T cell transfer model is helpful for understanding the initiation, 69
238
as well as regulation, of chronic colitis
239
immunodeficient recipients, which lack a regulatory T cell system, chronic colitis
240
develops as a result of enteric antigen-driven activation and polarization of naive T cells
241
to disease-producing Th1 cells in the colon, where enteric bacterial antigens gain access
242
to the secondary lymphoid tissue draining to the GALT, and naïve T cells interact with
243
antigen-presenting cells to become activated Th1 cells with a disease-producing
244
phenotype 69, 70.
245
. Since SCID or RAG knock-out mice are
In our previous study, prebiotic enzyme-treated rice fiber (ERF) showed
246
preventive effects on colitis in this T cell transferred model.
After they encountered
247
and responded to their cognate antigens, T cells acquired immune function, furthermore,
248
this unique characteristic was inherited by severe combined immune deficient mice
249
following splenocyte transplantation.
In that study, ERF significantly changed the
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SCFA production pattern and microbial profile.
Although the two groups of mice
251
(control group and ERF group) were fed same diet (AIN93G), these phenotypes were
252
distinct between the two groups, and the ERF-derived CD4+ T cells had significantly
253
attenuated inflammatory parameters 61.
254
Butyrate has anti-neoplastic effects at physiological concentrations due to its
255
effects on cell cycle regulation, leading to an increase of apoptosis in colonic tumor cell
256
lines 71 as well as anti-inflammatory effects 72. Butyrate has also been shown to suppress
257
TLR4 gene expression 73. Lipopolysaccharide is a ligand of TLR4, which induces the
258
degradation of IκBα, resulting in the induction of pro-inflammatory cytokines via the
259
transmigration of NF-κB.
260
due to prebiotic fermentation may be explained by this downregulation of TLR4 mRNA
261
expression.
262
colitis patients, and TLR4 was reported to detect gram negative microbiota and to
263
activate the innate immune system 74. Furthermore, a recent study revealed that TLR4
264
had the ability to regulate the cyclooxygenase-2 (COX2) expression in a chronic colon
265
cancer model via NF-κB expression 74.
266
germinated barley foodstuff (GBF), decreased the TLR4 and COX2 expression,
267
compared with that observed in the control group 29.
268
One of the anti-inflammatory actions mediated by butyrate
In a clinical study, TLR4 was reported to be upregulated in ulcerative
In our previous study, prebiotics, including
Probiotics can modulate or change the microbiota directly, while prebiotics
269
cannot.
However, prebiotics have a unique characteristic; the fecal bulking effect (in
270
other words, a high water holding capacity). McBurney focused on the relationship
271
between the bulking effects and changes in microbiota using the SCFA production as a
272
marker. That study revealed that high bulking fiber increased the SCFA production.
273
Therefore, changes in the physical condition (bulking effects) in the lower intestinal 12 ACS Paragon Plus Environment
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tract may also contribute to the composition of microbiota 75.
275
The mechanism(s) underlying the microbial modulation of the bowel function
276
induced by probiotics or prebiotics
277
To date, there have been three important mechanisms suggested to underlie how
278
microbiota influence the gut motor function.
279
products of bacterial fermentation may modulate the gut motor function.
280
changes in intrinsic intestinal neuroendocrine factors may affect the central nervous
281
system. Finally, mediators released by the gut immune response may lead to the change
282
in function 57, 76.
283
First, bacterial substances or the end Second,
Regarding the first point, the SCFA described in this review and bacterial
284
deconjugated bile salts 77 were shown to modulate the bowel motor function.
285
production resulting from the fermentation of unabsorbed carbohydrates is also an
286
important factor.
287
inhibit motor activity
288
described to modulate the gut motor function in this review.
289
reported that dysbiosis due to antibiotic administration can increase the substance P
290
immunoreactivity and induce hypersensitivity in the colon 79. Certain commensal strains
291
have the capacity to modulate intestinal pain through the induction of opioid receptors
292
80
293
The gas
Indeed, the overproduction of methane has been shown to directly 78
. With regard to the second point, 5HT has already been Furthermore, it has been
. A post-infectious IBS model was used to study the relationship between the
294
immune response and motor function.
Akiho et al. reviewed the role of many kinds of
295
cytokines and chemokines, as well as the imbalance of Th1/Th2 or Th17/Treg in the
296
malfunction of IBS based on the low grade inflammation theory and showed the
297
increase of proinflammatory cytokines production and abnormality of contractility 81.
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It was reported that a high concentration of SCFAs in the colon following
299
prebiotic ERF treatment prevented the enhancement of colonic motility under restraint
300
stress due to suppression of 5HT secretion, compared with the control and
301
polycarbophil Ca groups
302
restraint stress, and also maintains good fermentation under stress-free control
303
conditions.
304
cells is stimulated by mucosal stroking, microbiota and SCFAs, and that the presence of
305
mechanical stimuli is the most important factor affecting the 5HT release 82. Owing to
306
their high water-holding capacity and lattice-like physical structure, prebiotic ERF
307
might attenuate the colonic mucosal 5HT release during restraint stress compared with
308
the control condition.
309
strongest risk factors for the development of IBS.
310
to play an important role in persistent gut dysfunction by inducing an increase in
311
intestinal permeability and activating the mucosal immune system 57, 83
312
Future perspective of prebiotic and probiotic treatment for IBD and IBS
58.
Interestingly, ERF prevents abnormal fermentation under
Another study showed that the 5HT released from enterochromaffin (EC)
Finally, acute gastroenteritis is reported to be one of the Therefore, transient infection seems
313
Although the mechanisms underlying IBD and IBS are quite different, both
314
diseases have a common pathogenesis, an overwhelming immune response, in some
315
subtypes
316
which include abnormal bowel movements and abdominal pain
317
review, microbiota and the regulation of the diversity and number of microbiota, play an
318
important role in the pathogenesis of both IBS and IBD by pleiotropic mechanisms,
319
including modulation of the immune system, bowel motor-function, CNS and bulking
320
effects (water holding capacity and absorption of bile acids).
321
for IBS and IBD that modulate the microbiota are associated with a low incidence of
84, 85
.
In addition, IBS and IBD show heterogeneous clinical symptoms,
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86
.
As shown in this
Therapeutic approaches
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adverse effects (if any).
323
dysfunction or inflammation, treatment using these approaches is considered to be
324
highly safe and beneficial (Figure 1).
325
Therefore, for the patients with chronic gastrointestinal
In addition, it has been reported that modulating the microbiota using prebiotics 87
326
or probiotics can improve human health in several ways
327
reviewed the unique effects of gut microbiota on the morphogenesis of the intestinal
328
tract and remodeling of the vascular pattern, adiposity and organ homeostasis 57, 88.
329
Although further detailed studies are required to provide deeper insight into the
330
mechanisms of action, nutraceuticals (probiotics, prebiotics and other agents) may also
331
be helpful for modulating the colonic environment in healthy humans, in addition to
332
patients.
333 334
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. Sommer and Backhed
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Acknowledgements
336
The authors are deeply appreciative to Mr. Motoyasu Ishihara (Kirin Holdings,
337
Director) for his encouragement and permission to submit this manuscript, and to Ms.
338
Noriko Kuriyama (Kirin Holdings) for the grammatical corrections. The authors declare
339
no competing financial interests.
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Figure 1 caption
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The concept of modulating the microbiota and potential remedies for gastrointestinal
630
disease
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Journal of Agricultural and Food Chemistry
631 Figure 1
Modulators of Microbiota Probiotics Prebiotics Antibiotics
IBS
Bulking agents Amino acids Inflammation
Motility & Cognition Central nervous system
5HT Cytokines Chemokines Bowel movement
Wound healing
IBD
By dysbiosis Overwhelming immune system, Abnormal bowel movement l nta me ro n o rs i v En Fact
Dysbiosis
Ge n Fac etic tor s
Please print this figure in color
30 ACS Paragon Plus Environment
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