Publications of Graham R. Fleming - The Journal of Physical

SPECIAL ISSUE PREFACE pubs.acs.org/JPCA

Publications of Graham R. Fleming 1. The Photoelectron Spectrum of Thiazyl Fluoride, R.N. Dixon, G. Duxbury, G.R. Fleming, and J.M.V. Hugo, Chem. Phys. Lett. 14, 60 (1972). 2. Internal Conversion From Vibrationally Excited Levels, G. S. Beddard, G.R. Fleming, O.L.J. Gijzeman, and G. Porter, Chem. Phys. Lett. 18, 481 (1973). 3. Energy Dependence of Radiative Rates in Isolated Molecules, G.R. Fleming, O.L.J. Gijzeman, and S.H. Lin, Chem. Phys. Lett. 21, 527 (1973). 4. Theory of Intramolecular Vibrational Relaxation in Large Systems, G.R. Fleming, O.L.J. Gijzeman, and S.H. Lin, J. Chem. Soc., Faraday Trans. II 70, 37 (1974). 5. Time Resolved Absorption Spectra, G.R. Fleming, O.L.J. Gijzeman, and S.H. Lin, J. Chem. Soc., Faraday Trans. II 70, 1074 (1974). 6. Vibrational Energy Dependence of Radiationless Conversion in Aromatic Vapors, G.S. Beddard, G.R. Fleming, O.L. J. Gijzeman, and G. Porter, Proc. R. Soc. London, Ser. A 340, 519 (1974). 7. Theory for Time Resolved Emission Spectra, G.R. Fleming, O.L.J. Gijzeman, K.F. Freed, and S.H. Lin, J. Chem. Soc., Faraday Trans. II 71, 773 (1975). 8. The Fluorescence Lifetime of Tetracene Vapor, G.R. Fleming, C. Lewis, and G. Porter, Chem. Phys. Lett. 31, 33 (1975). 9. Direct Observation of Rotational Diffusion by Picosecond Spectroscopy, G.R. Fleming, M. Morris, and G.W. Robinson, Chem. Phys. 17, 91 (1976). 10. Properties of Single Picosecond Pulses from Neodymium Phosphate Glass, G.R. Fleming, I.R. Harrowfield, A.E.W. Knight, J.M. Morris, R.J. Robbins, and G.W. Robinson, Opt. Commun. 20, 36 (1977). 11. Measuring the Limits of Time, G.W. Robinson, and G.R. Fleming, Newtrino 7, 51 (1977). 12. Picosecond Spectroscopic Studies of Spontaneous and Stimulated Emission in Organic Dye Molecules, G.R. Fleming, A.E.W. Knight, J.M. Morris, R.J. Robbins, and G.W. Robinson, Chem. Phys. 23, 61 (1977). 13. Picosecond Fluorescence Studies of Xanthene Dyes, G.R. Fleming, A.E.W. Knight, J.M. Morris, R.J.S. Morrison, and G.W. Robinson, J. Am. Chem. Soc. 99, 4306 (1977). 14. Rotational Diffusion of the Mode Locking Dye DODCI and Its Photoisomer, G.R. Fleming, A.E.W. Knight, J.M. Morris, R.J. Robbins, and G.W. Robinson, Chem. Phys. Lett. 49, 1 (1977). 15. Picosecond Fluorescence Studies of Rotational Diffusion, G.R. Fleming, A.E.W. Knight, J.M. Morris, R.J. Robbins, and G.W. Robinson, Lasers in Chemistry, M.A. West, Ed.; Elsevier, London, p 316 (1977). 16. Picosecond Fluorescence Spectroscopy Using a Streak Camera, G.R. Fleming, J.M. Morris, and G.W. Robinson, Aust. J. Chem. 30, 2337 (1977). 17. Exciton Fission, and Annihilation in Crystalline Tetracene, G.R. Fleming, D.P. Millar, G.C. Morris, J.M. Morris, and G.W. Robinson, Aust. J. Chem. 30, 2353 (1977). r 2011 Graham R. Fleming

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18. Slip Boundary Conditions for Molecular Rotation: Time Dependent Fluorescence Depolarization Studies of BBOT, G.R. Fleming, A.E.W. Knight, J.M. Morris, R.J. Robbins, and G.W. Robinson, Chem. Phys. Lett. 51, 399 (1977). 19. Excited Singlet Decay Pathways in the Fluorescence Probe Molecules 1,8 Anilinonaphthalene Sulfonate (ANS), G.R. Fleming, G. Porter, R.J. Robbins, and J.A. Synowiec, Chem. Phys. Lett. 52, 228 (1977). 20. Picosecond Emission Spectroscopy, G.W. Robinson, J.M. Morris, R.J. Robbins, and G.R. Fleming, “Advances in Laser Spectroscopy” Proc. SPIE 113, 13 (1977). 21. Fluorescence and Competing Events of the Picosecond Time Scale, G.W. Robinson, J.M. Morris, R.J. Robbins, and G.R. Fleming, J. Mol. Struct. 47, 221 (1978). 22. Photophysics of Acid and Base Forms of Rhodamine B, P. J. Sadkowski, and G.R. Fleming, Chem. Phys. Lett. 57, 526 (1978). 23. Fluorescence and Energy Transfer in Photosynthesis, G.S. Beddard, G.R. Fleming, G. Porter, and C.J. Tredwell, Picosecond Phenomena, C.V. Shank, E.P. Ippen, and S.L. Shapiro, Eds.; Springer-Verlag, New York, p 149 (1978). 24. C. W. Mode Locked Dye Lasers for Ultrafast Spectroscopic Studies, G.R. Fleming and G.S. Beddard, Opt. Laser Technol. 10, 257 (1978). 25. Nonexponential Fluorescence Decay of Aqueous Tryptophan and Two Related Peptides Using Picosecond Spectroscopy, G.R. Fleming, J.M. Morris, R.J. Robbins, G.J. Woolfe, P.J. Thistlethwaite, and G.W. Robinson, Proc. Natl. Acad. Sci. U.S.A. 75, 4652 (1978). 26. The Fluorescence Decay Kinetics of In Vivo Chlorophyll Measured Using Low Intensity Excitation, G.S. Beddard, G.R. Fleming, G. Porter, G.F.W. Searle, and J.A. Synowiec, Biochim. Biophys. Acta. 545, 165 (1979). 27. Picosecond Studies of the Fluorescence Probe Molecules 1,8 Anilinonaphthalene Sulfonate (ANS), G.W. Robinson, R.J. Robbins, G.R. Fleming, J.M. Morris, A.E.W. Knight, and R.J.S. Morrison, J. Am. Chem. Soc. 100, 7145 (1978). 28. Picosecond Fluorescence Studies of Photosystem II, G.S. Beddard, G.R. Fleming, G. Porter, and J.A. Synowiec, Biochem. Soc. Trans. 6, 1385 (1978). 29. The Photophysics of Aqueous Tryptophan: pH and Temperature Effects, R.J. Robbins, G.R. Fleming, G.S. Beddard, G.W. Robinson, P.J. Thistlethwaite, and G.J. Woolfe, J. Am. Chem. Soc. 102, 6271 (1980). 30. Time Resolved Fluorescence from Biological Systems, G.S. Beddard, G.R. Fleming, G. Porter, and R.J. Robbins, Philos. Trans. R. Soc. London A298, 321 (1980). 31. Pulse Structure Studies and Absolute Cavity Length Determination for a Synchronously Pumped Picosecond Special Issue: Graham R. Fleming Festschrift Published: April 21, 2011 dx.doi.org/10.1021/jp2009594 | J. Phys. Chem. A 2011, 115, 3614–3629

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SPECIAL ISSUE PREFACE

Dye Laser, D.B. McDonald, D.H. Waldeck, and G.R. Fleming, Opt. Commun. 34, 127 (1980). The Influence of Solvent-Solute Interaction on Radiationless Processes: Excited State Dynamics of Anilinonaphthalene Sulfonate and Related Molecules, P.J. Sadkowski and G.R. Fleming, Chem. Phys. 54, 79 (1980). Anisotropic Absorption Studies of Orientational Motion, G.S. Beddard, G.R. Fleming, D.B. McDonald, G. Porter, D. Waldeck, and M. Westby, Picosecond Phenomena II, R.M. Hochstrasser et al., Eds.; Springer, New York, p 101 (1980). Applications of Synchronously Pumped Dye Lasers to Time Resolved Emission and Absorption Spectroscopy, G.R. Fleming and G.S. Beddard, II, Nuovo Cimento 63, 151 (1981). Temporal and Spectral Studies of a Synchronously Pumped Dye Laser: Detailed Interpretation of Autocorrelation Measurements, D.B. McDonald, J. Rossel, and G.R. Fleming, IEEE J. Quantum Electron. QE17, 1134 (1981). Picosecond Pulse Induced Transient Molecular Birefringence and Dichroism, D.H. Waldeck, A.J. Cross, D.B. McDonald, and G.R. Fleming, J. Phys. Chem. 85, 2614 (1981). Influence of Viscosity and Temperature on Rotational Reorientation-Anisotropic Absorption Studies of DODCI, D.H. Waldeck and G.R. Fleming, J. Chem. Phys. 74, 2614 (1981). Intermediate Case Radiationless Decay: The Excited State Dynamics of Pyrazine, D.B. McDonald, G.R. Fleming, and S.A. Rice, Chem. Phys. 60, 335 (1981). Applications of Continuously Operating, Synchronously Mode-Locked Lasers, G.R. Fleming, Adv. Chem. Phys. 49, 1 (1982). “Lasers” and “Luminescence Instrumentation, G.R. Fleming, Light, Chemical Change, and Life: a Source Book in Photochemistry, J.D. Coyle et al., Eds.; The Open University (1982). Low Intensity Subnanosecond Fluorescence Study of the Light Harvesting Chlorophyll a/b Protein, W.T. Lotshaw, R.S. Alberte, and G.R. Fleming, Biochim. Biophys. Acta 682, 75 (1982). Low Intensity Picosecond Fluorescence Kinetics and Excitation Dynamics in Barley Chloroplasts, R.J. Gulotty, G.R. Fleming, and R.S. Alberte, Biochim. Biophys. Acta 682, 322 (1982). Solvent Influence on Photochemical Isomerization: Photophysics of DODCI, S.P. Velsko and G.R. Fleming, Chem. Phys. 65, 59 (1982). Photochemical Isomerization in Solution. Photophysics of Diphenyl Butadiene, S.P. Velsko and G.R. Fleming, J. Chem. Phys. 76, 3553 (1982). Ultraviolet Picosecond Pump-Probe Spectroscopy with a Synchronously Pumped Dye Laser. Rotational Diffusion of Diphenyl Butadiene, D.H. Waldeck, W.T. Lotshaw, D.B. McDonald, and G.R. Fleming, Chem. Phys. Lett. 88, 297 (1982). Picosecond Laser Studies of Molecular Dynamics in Liquids, G.R. Fleming, W.T. Lotshaw, D.B. McDonald, and D.H. Waldeck, Proc. Lasers ’81, p 882 (1982). Dynamics of Photoisomerization, G.R. Fleming, S.P. Velsko, and D.H. Waldeck, Picosecond Phenomena III, p 238 (1982). Influence of Solvent on Photochemical Isomerization: Photophysics of Diphenyl Butadiene in Polar Solvents,

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K.M. Keery and G.R. Fleming, Chem. Phys. Lett. 93, 322 (1982). Breakdown of Kramers Theory Description of Photochemical Isomerization and the Possible Involvement of Frequency Dependent Friction, S.P. Velsko, D.H. Waldeck, and G.R. Fleming, J. Chem. Phys. 78, 249 (1983). Nonexponential Fluorescence Decay of Tryptophan, and N-terminal Tryptophyl Peptides, M.C. Chang, J.W. Petrich, D.B. McDonald, and G.R. Fleming, J. Am. Chem. Soc. 105, 3819 (1983). On the Origin of the Non-Exponential Decay in Tryptophan and its Derivatives, J.W. Petrich, M.C. Chang, D.B. McDonald, and G.R. Fleming, J. Am. Chem. Soc. 105, 3824 (1983). Theory of Electronic Relaxation in Solution in the Absence of an Activation Barrier, B. Bagchi, G.R. Fleming, and D.W. Oxtoby, J. Chem. Phys. 78, 7375 (1983). Time Resolved Polarization Spectroscopy: Level Kinetics and Rotational Diffusion, A.J. Cross, D.H. Waldeck, and G.R. Fleming, J. Chem. Phys. 78, 6455 (1983). Picosecond Spectroscopy of Solutions, Proteins and Photosynthetic Membranes, G.R. Fleming, W.T. Lotshaw, R.J. Gulotty, M.C. Chang, and J.W. Petrich, Proc. Int. Conf. Photochem. Photobiol. Alexandria, Egypt. Laser Chemistry 2B, 181 (1983). Analysis of Time-Resolved Fluorescence Anisotropy Decays, A.J. Cross and G.R. Fleming, Biophys. J. 46, 45 (1984). Theory of the Time Development of the Stokes Shift in Polar Media, B. Bagchi, D.W. Oxtoby, and G.R. Fleming, Chem. Phys. 86, 257 (1984). Internal Dynamics, and Overall Motion of Lysozyme Studies by Fluorescence Depolarization of the Eosin Lysozyme Complex, M.C. Chang, A.J. Cross, and G.R. Fleming, J. Biomol. Struct. Dyn. 1, 299 (1984). Photochemical Isomerization View as a Model for Activated Barrier Crossing in Solution, G.R. Fleming, D.H. Waldeck, K.M. Keery, and S.P. Velsko, NATO ASI Ser. C 127, 67-77 (1984). Search for the Kramers Theory Turnover: Photochemical Isomerization at Very Low Viscosities, S.H. Courtney and G.R. Fleming, Chem. Phys. Lett. 103, 443 (1984). Unimolecular Reaction Rates in Solution and in the Isolated Molecule: Comparison of Diphenyl Butadiene Nonradiative Decay in Solutions and Supersonic Jets, S.H. Courtney, G.R. Fleming, L.R. Khundkar, and A.H. Zewail, J. Chem. Phys. 80, 4559 (1984). Dynamics of Energy Transfer in Chloroplasts and the Internal Dynamics of an Enzyme in Ultrafast Phenomena, R.J. Gulotty, L. Mets, S.R. Alberte, A.J. Cross, and G.R. Fleming, Ultrafast Phenomena IV, K.B. Eisenthal and D. Auston, Eds.; Springer, New York, p 466. Ultrafast Processes in Biology, J.W. Petrich and G.R. Fleming, Photochem. Photobiol. 40, 775 (1984). Picosecond Fluorescence Study of Photosynthetic Mutants of Chlamydomonas Reinhardii: Origin of the Fluorescence Decay Kinetics of Chloroplasts, R.J. Gulotty, L. Mets, R.S. Alberte, and G.R. Fleming, Photochem. Photobiol. 41, 487 (1985). Removal of Coherent Coupling Artifact in Ground State Recovery Experiments: Malachite Green in WaterMethanol Mixtures, R.A. Engh, J.W. Petrich, and G.R. Fleming, J. Phys Chem. 89, 618 (1985). dx.doi.org/10.1021/jp2009594 |J. Phys. Chem. A 2011, 115, 3614–3629



65. Photoisomerization of Stilbene in Low Viscosity Solvents: Comparison of Isolated, and Solvated Molecules, S.H. Courtney and G.R. Fleming, J. Chem. Phys. 83, 215 (1985). 66. Dependence of the Coherence Spike on the Material Dephasing time in Pump-Probe Experiments, M. Balk, and G.R. Fleming, J. Chem. Phys. 83, 4300 (1985). 67. Time Correlated Single Photon Counting with Microchannel Plate Detectors, M.C. Chang, S.H. Courtney, A.J. Cross, R.J. Gulotty, J.W. Petrich, and G.R. Fleming, Anal. Instrum. 14 (3 and 4), 433 (1985). 68. Nonexponential Fluorescence Decay in Tryptophan and Tryptophan-Containing Peptides and Proteins, J.W. Petrich, M. Chang, and G.R. Fleming, Primary Photoprocesses in Biology, and Medicine, NATO-ASI, R.V. Bensasson et al., Eds.; p 77 (1985). 69. Internal Dynamics of Lysozyme Studied by Time-Resolved Fluorescence Depolarization, A.J. Cross, M.C. Chang, and G.R. Fleming, Primary Photoprocesses in Biology, and Medicine, NATO-ASI, R.V. Bensasson et al., Eds.; p 81 (1985). 70. Unimolecular Reactions of Isolated, Collisional Gas Phase and Solvated Molecules: Connections Between Stibene Isomerization Rates Under Supersonic Jet and Thermal Gas Phase Conditions, M.W. Balk, S.H. Courtney, and G.R. Fleming, Proc. 1st Int. Laser Conference, Dallas, Texas (1985). 71. Chemical Applications of Ultrafast Spectroscopy (monograph), G.R. Fleming, Oxford University Press, New Yor, (1986). 72. Activated Barrier Crossing: Comparison of Experiment and Theory, G.R. Fleming, S. Courtney, and M. Balk, J. Stat. Phys. 42, 83 (1986). 73. Subpicosecond Spectroscopy, G.R. Fleming, Ann. Rev. Phys. Chem. 37, 81 (1986). 74. Influence of Inhibitor Binding on the Internal Motion of Lysozyme, A.J. Cross and G.R. Fleming, Biophys. J. 50, 507 (1986). 75. Picosecond Fluorescence Studies of Excitation Dynamics in Photosynthetic Light Harvesting Arrays, R.J. Gulotty, L. Mets, R.S. Alberte, and G.R. Fleming, Fluoresc. Biol. Sci. 91 (1986). 76. Conformational Dynamics of Tryptophan: A Proposal for the Origin of the Nonexponential Fluorescence Decay, R. A. Engh, L. Chen, and G.R. Fleming, Chem. Phys. Lett. 126, 365 (1986). 77. Unimolecular Reactions in Isolated, and Collisional Systems: Is the Transition State Rate an Upper Limit for the Isomerization of Stilbene? M.W. Balk and G.R. Fleming, J. Phys. Chem. 90, 3975 (1986). 78. Solvation Dynamics in Polar Liquids: Experiment, and Simulation, M. Maroncelli, E.W. Castner, Jr., S.P. Webb, and G.R. Fleming, Ultrafast Phenomena V, G.R. Fleming and A.E. Siegman, Eds.; Springer, New York, p 303 (1986). 79. The Influence of Friction, and Deuteration on Stilbene Isomerization, S.H. Courtney, M.W. Balk, S. Canonica, S.K. Kim, and G.R. Fleming, Ultrafast Phenomena V, G.R. Fleming and A.E. Siegman, Eds.; Springer, New York, p 341 (1986). 80. Electron Transfer and Rapid Restricted Motion in Homologous Azurins, J.W. Petrich, J.W. Longworth, and G.R. Fleming, Ultrafast Phenomena V, G.R. Fleming and A.E. Siegman, Eds.; Springer, New York, p 413 (1986).

81. Tryptophan Structure and Dynamics Using GROMOS, R.A. Engh, L.X.-Q. Chen, and G.R. Fleming, Ann. N.Y. Acad. Sci. 482, 304 (1986). 82. Rotational Diffusion of Stilbene in Alkane and Alcohol Solution, S.H. Courtney, S.K. Kim, S. Canonica, and G.R. Fleming, J. Chem. Soc., Faraday Trans. II, 82, 2065 (1986). 83. Subpicosecond Resolution Studies of Solvation Dynamics in Polar Protic and Aprotic Solvents, E.W. Castner, Jr., M. P. Maroncelli, and G.R. Fleming, J. Chem. Phys. 86, 1090 (1987). 84. Characterization of the Fluorescence Decays of the Chlorophyll a/b Protein, D.D. Eads, S.P. Webb, T.G. Owens, L. Mets, R.S. Alberte, and G.R. Fleming, Progress in Photosynthesis Research, Vol. 1, J. Biggens, Ed.; Martinus Nijhoff Publishers, Leiden, The Netherlands, p 135 (1987). 85. Time-Resolved Fluorescence Decay Kinetics in Photosystem I. Experimental Estimates of Charge Separation and Energy Transfer Rates, T.G. Owens, S.P. Webb, D.D. Eads, R.S. Alberts, L. Mets, and G.R. Fleming, Progress in Photosynthesis Research, Vol. 1, J. Biggens, Ed.; Martinus Nijhoff Publishers, Leiden, The Netherlands, p 83 (1987). 86. Internal Motion and Electron Transfer in Proteins: A Picosecond Fluorescence Study of Three Homologous Azurins, J.W. Petrich, J.W. Longworth, and G.R. Fleming, Biochemistry 26, 2711 (1987). 87. Antenna Size Dependence of Fluorescence Decay in the Core Antenna of Photosystem I, T. Owens, S.P. Webb, R.S. Alberte, L. Mets, and G.R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 84, 1532 (1987). 88. Picosecond Time Resolved Fluorescence of RibonucleaseTl: A pH, and Substrate-Analog Binding Study, L.S. Chen, J.W. Longworth, and G.R. Fleming, Biophys. J. 51, 865 (1987). 89. Picosecond Solvation Dynamics of Coumarin 153: The Importance of Molecular Aspects of Solvation, M. Maroncelli and G.R. Fleming J. Chem. Phys. 86, 6221 (1987). 90. Picosecond Fluorescence Studies of Polypeptide Dynamics: Fluorescence Anisotropies, and Lifetimes, L.X.-Q. Chen, J.W. Petrich, G.R. Fleming, and A. Perico, Chem. Phys. Lett. 139, 55 (1987). 91. A High Resolution Fluorescence Decay and Depolarization Study of Human Plasma Apolipoproteins, M.C. Chang, G.R. Fleming, A. Scanu, and N.-C. Yang, Photochem. Photobiol. 47, 345 (1988). 92. Time-Resolved Spectroscopy of Tryptophan Conformers in a Supersonic Jet, L.A. Philips, S.P. Webb, S.J. Martinez, G.R. Fleming, and D.H. Levy, J. Am. Chem. Soc. 110, 1352 (1988). 93. Influence of Non-Debye Relaxation and of Molecular Shape on the Time Dependence of the Stokes Shift in Polar Media, E.W. Castner, Jr., G.R. Fleming, and B. Bagchi, Chem. Phys. Lett. 143, 270 (1988). 94. Antenna Structure, and Excitation Dynamics in Photosystem I. Studies of Detergent-Isolated Photosystem I. Preparations Using Time-Resolved Fluorescence Analysis, T.G. Owens, S.P. Webb, R.S. Alberte, L. Mets, and G.R. Fleming, Biophys. J. 53, 733 (1988). 95. The Dynamics of Polar Solvation, E.W. Castner, Jr., B. Bagchi, M. Maroncelli, S.P. Webb, A. Ruggiero, and G.R. Fleming, Ber. Bunsen-Ges. Phys. Chem. 92, 363 (1988). 96. Reorientation and Isomerization of Trans-Stilbene in Alkane Solutions, S.K. Kim, and G.R. Fleming, J. Phys. Chem. 92, 2168 (1988). 3616

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97. Rotational Reorientation, and Isomerization of TransStilbene, S.K. Kim, S.H. Courtney, and G.R. Fleming, Advances in Laser Science-III, A. Tam, J.L. Gole, W.C. Stwalley, Eds.; Am. Inst. of Physics, N.Y. Conf. Proc. #172 (1988). 98. Rates of Primary Electron Transfer in Photosynthetic Reaction Centers and Their Mechanistic Implications, G.R. Fleming, J.-L. Martin, and J. Breton, Nature 333, 190 (1988). 99. The Dynamics of Polar Solvation: Inhomogeneous Dielectric Continuum Models, E.W. Castner, Jr., G.R. Fleming, B. Bagchi, and M. Maroncelli, J. Chem. Phys. 89, 3519 (1988). 100. Picosecond Fluorescence Studies of Polypeptide Dynamics, L.X.-Q. Chen, J.W. Petrich, A. Perico, and G.R. Fleming, SPIE Proc., 909, 216 (1988). 101. Reorientation of Tryptophan and Simple Peptides: Onset of Internal Flexibility, and Comparison with Molecular Dynamics Simulation, L.X.-Q. Chen, R.A. Engh, and G.R. Fleming, SPIE Proc., 909, 223 (1988). 102. Determination of Long Distance Intramolecular Triplet Energy Transfer Rates. A Quantitative Comparison with Electron Transfer, G.L. Closs, P. Piotrowiak, J.M. MacInnis, and G.R. Fleming, J. Am. Chem. Soc. 110, 2652 (1988). 103. Dipolar Solvation Dynamics, M. Maroncelli, E.W. Castner, Jr., B. Bagchi, and G.R. Fleming, Faraday Discuss., 85 (1988). 104. Comparison of Time-Resolved Fluorescence Stokes Shift Measurements to a Molecular Theory of Solvation Dynamics, M. Maroncelli and G.R. Fleming, J. Chem. Phys. 89, 875 (1988). 105. The Photosynthetic Bacterial Reaction Center: Structure and Dynamics, J.-L. Martin, J. Breton, J.C. Lambry, and G.R. Fleming, J. Breton and A. Vermeglio, Eds.; NATO ASI, Vol. 149, Plenum, New York, p 195, (1988). 106. Diffusion Controlled Reactions: Experimental Verification of the Time-Dependent Rate Equation, N. Periasamy, S. Doraiswamy, B. Venkataraman, and G.R. Fleming, J. Chem. Phys. 89, 4799 (1988). 107. Dynamics Simulation Studies of Apoazurin of Alcaligenes Denitrificans, L.X.-Q. Chen, R.A. Engh, A. Brunger, D.T. Nguyen, M. Karplus, and G.R. Fleming, Biochemistry 27, 6908 (1988). 108. Reorientation of Tryptophan, and Simple Peptides: Onset of Internal Flexibility and Comparison with Molecular Dynamics Simulation, L. X-Q. Chen, R.A. Engh, and G.R. Fleming, J. Phys. Chem. 92, 4811 (1988). 109. Unimolecular Reactions in Isolated and Collisional Systems: Deuterium Isotope Effect in the Photoisomerization of Stilbene, S.H. Courtney, M.W. Balk, L.A. Philips, S.P. Webb, D. Yang, D.H. Levy, and G.R. Fleming, J. Chem. Phys. 89, 6697 (1988). 110. Computer Simulation of the Dynamics of Solvation in Water, M. Maroncelli and G.R. Fleming, J. Chem. Phys. 89, 5044 (1988). 111. Dynamics of Polar Solvation, G.R. Fleming and M.P. Maroncelli, Ultrafast Phenomena VI, C.B. Harris, K. Yoshihara, and T. Yajima, Eds.; Springer, New York, p 532 (1988). 112. The Effect of Overlapping Electronic Excited States on the Subpicosecond Fluorescence Anisotropy Decay

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Behavior of Tryptophan in Water, A. Ruggiero, D. Todd, and G.R. Fleming, Ultrafast Phenomena VI, C.B. Harris, K. Yoshihara, and T. Yajima, Eds.; Springer, New York, p 477 (1988). Low Temperature Femtosecond Spectroscopy of the Initial Step of Electron Transfer in Reaction Centers from the Photosynthetic Bacteria Rhodobacter sphaeroides and Rhodopseudomonas viridis, J. Breton, J.-L. Martin, G.R. Fleming, and J.C. Lambry, Biochemistry 27, 8276 (1988). Diffusion Influenced Reactions at Short Times: Breakdown of the Debye-Smoluchowski Description, D.D. Eads, N. Periasamy, and G.R. Fleming, J. Chem. Phys. 90, 3876 (1989). On the Generalized Continuum Model of Dipolar Solvation Dynamics, B. Bagchi, E.W. Castner, Jr., and G.R. Fleming, J. Mol. Struct. 194, 171 (1989). Antenna Structure, and Excitation Dynamics in Photosystem I. II. Studies with Photosynthetic Mutants of Chlamydomonas reinhardtii Lacking Photosystem II., T. G. Owens, S.P. Webb, L. Mets, R.S. Alberte, and G.R. Fleming, Biophys. J. 56, 95 (1989). Electron Energy Transfer in Photosynthetic Bacterial Reaction Centers, J. Jean, C.-K. Chan, and G.R. Fleming, Isr. J. Chem. (Special Issue) 28, 169 (1988). Chlorophyll Fluorescence Lifetime Studies of Greening in Yellow Mutants of Chlamydomonas reinhardtii: Assembly of the Photosystem I Core Complex, C.-K. Chan, G. Gaines, III, G.R. Fleming, and L. Mets, Biochem. Biophys. Acta 975, 59 (1989). Polar Solvent Dynamics and Electron Transfer Reactions, M. Maroncelli, J. MacInnis, and G.R. Fleming, Science 243, 1674 (1989). Isomerization of t-Stilbene in Alcohols, S.K. Kim, S.H. Courtney, and G.R. Fleming, Chem. Phys. Lett. 159, 543 (1989). Excitation Transport and Trapping on Spectrally Disordered Lattices, J.M. Jean, C.-K. Chan, G.R. Fleming, and T.G. Owens, Biophys. J. 56, 1203 (1989). Subpicosecond Fluorescence Anisotropy Studies of Tryptophan in Water, A.J. Ruggiero, DC.Todd, and G.R. Fleming, J. Am. Chem. Soc. 112, 1003 (1990). Direct Observation of Energy Transfer in a Photosynthetic Membrane: Chlorophyll b to Chlorophyll a Transfer in LHC II, D.D. Eads, E.W. Castner, Jr., R.S. Alberte, L. Mets, and G.R. Fleming, J. Phys. Chem. 93, 8271 (1990). Dynamics of Activationless Reactions in Solution, B. Bagchi, and G.R. Fleming, J. Phys. Chem. 94, 9 (1990). Primary Charge Separation in Reaction Centers: A Femtosecond Absorption Study, J.-L. Martin, J. Breton, G.R. Fleming, and J.C. Lambry, Proc. ICEET, Prague, Vol. 2, pp 92-96 (1990). Energy Transfer in Photosynthesis, D.D. Eads, J.M. Jean, C.-K. Chan, L. Mets, R.S. Alberte, and G.R. Fleming, Proc. of ICEET, Prague, Vol. 2, pp 64-68 (1990). Polypeptide Dynamics: Experimental Tests of an Optimized Rouse-Zimm Type Model, Y. Hu, J.M. MacInnis, B.J. Cherayil, G.R. Fleming, K.F. Freed, and A. Perico, J. Chem. Phys. 93, 822 (1990). Photophysics of Metalloazurins, J.E. Hansen, J.W. Longworth, and G.R. Fleming, Biochemistry 29, 7329 (1990). dx.doi.org/10.1021/jp2009594 |J. Phys. Chem. A 2011, 115, 3614–3629



129. Chemical Dynamics in Solution, G.R. Fleming, and P.G. Wolynes, Physics Today (Special Issue) 36-43 (1990). 130. Dynamic Solvent Effects in Adibatic Electron Transfer Reactions: Role of Translational Modes, B. Bagchi, A. Chandra, and G.R. Fleming, J. Phys. Chem. 94, 5197 (1990). 131. Dynamics Studies of Tryptophan and Single Tryptophan Containing Peptides: Simulations and an Analytical Model, Y. Hu, J.M. MacInnis, B.J. Cherayil, G.R. Fleming, K.F. Freed, and A. Perico, SPIE Proceedings, Vol. II, J.R. Lakowicz, Ed.; p 425 (1990). 132. A Subpicosecond, Subnanosecond and Steady State Study of Diffusion-Influenced Fluorescence Quenching, D.D. Eads, B.G. Dismer, and G.R. Fleming, J. Chem. Phys. 93, 1136 (1990). 133. Time Resolved Dynamics of Isolated Molecular Systems Studies with Phase Locked Femtosecond Pulse Pairs, N.F. Scherer, A.J. Ruggiero, M. Du, and G.R. Fleming, J. Chem. Phys. 93, 856 (1990). 134. Solvation and Barrierless Electron Transfer: How Different Are the Dynamics? B. Bagchi, A. Chandra, and G.R. Fleming, Ultrafast Phenomena VII, E.P. Ippen, C.B. Harris, G.A. Mourou, and A.H. Zewail, Eds.; Springer, New York, p 408 (1990). 135. Dynamics of Cis-Stilbene Isomerization in Solution, J.M. Jean, DC.Todd, S. Rosenthal, A.J. Ruggiero, and G.R. Fleming, Ultrafast Phenomena VII, E.P. Ippen, C.B. Harris, G.A. Mourou, and A.H. Zewail, Eds.; Springer, New York, p 441 (1990). 136. Studies of Diffusion-Influenced Fluorescence Quenching, D.D. Eads, B.G. Dismer, and G.R. Fleming, Ultrafast Phenomena VII, E.P. Ippen, C.B. Harris, G.A. Mourou, and A.H. Zewail, Eds.; Springer, New York, p 510 (1990). 137. Impulsive Phase Coherent Femtosecond Spectroscopy of Atomic and Molecular Transients with Phase-Locked Pulse Pairs, A.J. Ruggiero, N.F. Scherer, M. Du, and G.R. Fleming, Ultrafast Phenomena VII, E.P. Ippen, C.B. Harris, G.A. Mourou, and A.H. Zewail, Eds.; Springer, New York, p 334 (1990). 138. Subpicosecond Fluorescence Anisotropy Measurements of Tryptophanyl Residues in Proteins, J.E. Hansen, S.J. Rosenthal, and G.R. Fleming, Ultrafast Phenomena VII, E.P. Ippen, C.B. Harris, G.A. Mourou, and A.H. Zewail, Eds.; Springer, New York, p 548 (1990). 139. Fluorescence Upconversion Study of Cis-Stilbene Isomerization, DC.Todd, J.M. Jean, S.J. Rosenthal, A.J. Ruggiero, D. Yang, and G.R. Fleming, J. Chem. Phys. 93, 8658 (1990). 140. Comment on: “Dynamic Stokes Shift in Coumarin: Is It Only Relaxation?”, M. Maroncelli, R.S. Fee, C.F. Chapman, and G.R. Fleming, J. Phys. Chem. 95, 1012 (1991). 141. Initial Electron Transfer in Photosynthetic Reaction Centers of Rb. capsulatus Mutants, C.-K. Chan, L.X.-Q. Chen, T.J. DiMagno, D.K. Hanson, M. Schiffer, J.R. Norris, and G.R. Fleming, Chem. Phys. Lett. 176, 366 (1991). 142. Classical, and Quantum Models of Activationless Reaction Dynamics, J.M. Jean, R.A. Friesner, and G.R. Fleming, Ber. Bunsen-Ges. Phys. Chem. 95, 253 (1991). 143. Molecular Dynamics Study of Rotational Reorientation of Tryptophan, and Several Indoles in Water, Y. Hu, and G.R. Fleming, J. Chem. Phys. 94, 3857 (1991). 144. Fluorescence-Detected Wavepacket Interferometry: TimeResolved Molecular Spectroscopy with Sequences of

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Femtosecond Phase-Locked Pulses, N.F. Scherer, R.J. Carlson, M. Du, A.J. Ruggiero, A. Matro, V. R-Rochin, J.A. Cina, G.R. Fleming, and S.A. Rice, J. Chem. Phys. 95, 1487 (1991). Femtosecond Solvation Dynamics in Acetonitrile: Observation of the Inertial Contribution to the Solvent Response, S.J. Rosenthal, X. Xie, M. Du, and G.R. Fleming, J. Chem. Phys. 95, 4715 (1991). Fluorescence-Detected Wave Packet Interferometry. II. Role of Rotations, and Determination of the Susceptibility, N.F. Scherer, A. Matro, L.D. Ziegler, M. Du, R.J. Carlson, J.A. Cina, and G.R. Fleming, J. Chem. Phys. 96, 4180 (1992). Theory of Long Time Peptide Dynamics: Test of Various Reduced Descriptions, and Role of Internal Variables, Y. Hu, G.R. Fleming, K.F. Freed, and A. Perico, Chem. Phys. 158, 395 (1991). Proton Transfer in Mixed Water-Organic Solvent Solutions: Correlation Between Rate, Equilibrium Constant, and the Proton Free Energy of Transfer, E. Pines, and G.R. Fleming, J. Phys. Chem. 95, 10448 (1991). Regenerative Amplification of Picosecond Pulses in Nd: YAG at Repetition Rates in the 100 kHz Range, A.J. Ruggiero, N.F. Scherer, G.M. Mitchell, G.R. Fleming, and J.N. Hogan, J. Opt. Soc. Am. B, 8, 2061 (1991). Mechanism of the Initial Charge Separation in Photosynthetic Bacterial Reaction Centers, C.-K. Chan, T.J. DiMagno, L.X.-Q. Chen, J.R. Norris, and G.R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 88, 11202 (1991). Fluorescence Studies of Rat Cellular Retinol Binding Protein II Produced in Escherichia coli; An Analysis of Four Tryptophan Substitution Mutants, B.C. Locke, J.M. MacInnis, S.-J. Qian, E. Li, G.R. Fleming, and N.C. Yang, Biochemistry 31, 2376 (1992). Heterodyne-Detected Time-Domain Measurements of I2 Predissociation and Vibrational Dynamics in Solution, N.F. Scherer, L. Ziegler, and G.R. Fleming, J. Chem. Phys. 96, 5544 (1992). Ultrafast Solvent Dynamics: Connection Between Time Resolved Fluorescence and Optical Kerr Measurements, M. Cho, S.J. Rosenthal, N.F. Scherer, L.D. Ziegler, and G. R. Fleming, J. Chem. Phys. 96, 5033 (1992). Energy Transfer and Trapping in the Photosystem I Core Antenna: A Temperature Study, M. Werst, Y. Jia, L. Mets, and G.R. Fleming, Biophys. J. 61, 868 (1992). Application of Multilevel Redfield Theory to Electron Transfer in Condensed Phases, J.M. Jean, R.A. Friesner, and G.R. Fleming, J. Chem. Phys. 96, 5827 (1992). Subpicosecond Fluorescence Depolarization Studies of Tryptophan and Tryptophanyl Residues of Proteins, J.E. Hansen, S.J. Rosenthal, and G.R. Fleming, J. Phys. Chem. 96, 3034 (1992). Simulations of Temperature Dependence of Energy Transfer in PSI Core Antenna, Y. Jia, J. Jean, M. Werst, C.-K. Chan, and G.R. Fleming, Biophys. J. 63, 259 (1992). Primary Charge Separation in Photosynthetic Bacterial Reaction Centers and Femtosecond Solvation Dynamics, C.-K. Chan, S.J. Rosenthal, T.J. DiMagno, L.X.-Q. Chen, X. Xie, J.R. Norris, and G.R. Fleming, Proceeding of “Dynamics, and Mechanisms of Photo-induced Electron Transfer, and Related Phenomena”, Osaka, Japan, May 12-16 , 1991, N. Mataga, T. Okada, and H. Masuhara, Eds.; Elsevier Sci. Pub. B.V., New York, p 105 (1991). dx.doi.org/10.1021/jp2009594 |J. Phys. Chem. A 2011, 115, 3614–3629



159. Characterization of Charge Separation in Membrane Spanning Protein Reaction Centers of Bacterial Photosynthetics, T.J. DiMagno, C.-K. Chan, D.K. Hanson, M. Schiffer, G.R. Fleming, and J.R. Norris, Charge, and Field Effects in Biosystems-III, M.J. Allen, Ed.; Birkhauser, Boston (1992). 160. Photon Echoes and Related Four Wave Mixing Spectroscopies Using Phase-Locked Pulses, M. Cho, N.F. Scherer, S. Mukamel, and G.R. Fleming, J. Chem. Phys. 96, 5618 (1992). 161. Femtosecond Spontaneous Emission Studies of Reaction Centers From Photosynthetic Bacteria, M. Du, S.J. Rosenthal, X. Xie, T.J. DiMagno, M. Schmidt, D.K. Hanson, M. Schiffer, J.R. Norris, and G.R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 89, 8517 (1992). 162. Excited State Proton Transfer of Protonated 1-Aminopyrene Complexed with Beta-Cyclo-dextrin, J.E. Hansen, E. Pines, and G.R. Fleming, J. Phys. Chem. 96, 6904 (1992). 163. Femtosecond Fluorescence Depolarization Study of Photosynthetic Antenna Proteins: Observation of Ultrafast Energy Transfer in Trimeric C-phycocyanin, and Allophycocyanin, X. Xie, M. Du, L. Mets, and G.R. Fleming, SPIE Symp., 1640, 690 (1992). 164. Calculations of Absorption and Emission Spectra: A Study of Cis-Stilbene, DC.Todd, G.R. Fleming, and J.M. Jean, J. Chem. Phys. 97, 8915 (1992). 165. Dynamics of Solvent Relaxation in the γ-Cyclodextrin Cavity Compared to That in Pure Water, S. Vajda, S.J. Rosenthal, and G.R. Fleming, Sixth International Symposium on Cyclodextrins, Editions de Sante Publishers, Paris, France, Series Minuits, D. Duchene, Ed.; in press. 166. Femtosecond Solvent Dynamics Studied by Time Resolved Fluorescence and Transient Birefringence, S.J. Rosenthal, N.F. Scherer, M. Cho, X. Xie, M.E. Schmidt, and G.R. Fleming, Ultrafast Phenomena VIII, J.-L. Martin, A. Migus, G.A. Mourou, and A. Zewail, Eds.; Springer, New York, p 616 (1993). 167. Femtosecond Spontaneous Emission Studies of Photosynthetic Bacterial Reaction Centers, S.J. Rosenthal, M. Du, X. Xie, T.J. DiMagno, M.E. Schmidt, J.R. Norris, and G.R. Fleming, Ultrafast Phenomena VIII, J.-L. Martin, A. Migus, G.A. Mourou, and A. Zewail, Eds.; Springer, New York, p 539 (1993). 168. Spectroscopic Applications of Phase Locked Femtosecond Pulses, N.F. Scherer, M. Cho, L.D. Ziegler, M. Du, A. Matro, J. Cina, and G.R. Fleming, Ultrafast Phenomena VIII, J.-L. Martin, A. Migus, G.A. Mourou, and A. Zewail, Eds.; Springer, New York, p 99 (1993). 169. Transient Dichroism Studies of Iodine Predissociation in Solution, N.F. Scherer, L.D. Ziegler, D. Jonas, and G.R. Fleming, Ultrafast Phenomena VIII, J.-L. Martin, A. Migus, G.A. Mourou, and A. Zewail, Eds.; Springer, New York, p 49 (1993). 170. Study of Reaction Center Function by Analysis of the Effects of Site-Specific and Compensatory Mutations, M. Schiffer, C.-K. Chan, C.-H. Chang, T.J. DiMagno, G.R. Fleming, S. Nance, J. Norris, S. Snyder, M. Thurnauer, D.M. Tiede, and D.K. Hanson, The Photosynthetic Bacterial Reaction Center II, J. Breton and A. Vermeglio, Eds.; Plenum Press, New York, p 351 (1992). 171. Recent Experimental Results for the Initial Step of Bacterial Photosynthesis, T.J. DiMagno, S.J. Rosenthal,

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X. Xie, M. Du, C.-K. Chan, D. Hanson, M. Schiffer, J.R. Norris, and G.R. Fleming, The Photosynthetic Bacterial Reaction Center II, J. Breton and A. Vermeglio, Eds.; Plenum Press, New York, p 209 (1992). Direct Observation of Ultrafast Energy Transfer in PSI Core Antenna, M. Du, X. Xie, Y. Jia, L. Mets, and G.R. Fleming, Chem. Phys. Lett. 201, 535 (1993). Photon Echo Measurements in Liquids: Numerical Calculations with Model Systems, M. Cho and G.R. Fleming, J. Chem. Phys. 98, 2848 (1993). Cis-Stilbene Isomerization: Temperature Dependence and the Role of Mechanical Friction, DC.Todd and G.R. Fleming, J. Chem. Phys. 98, 269 (1993). Nonlinear Response Functions for Birefringence, and Dichroism Measurements in Condensed Phases, M. Cho, G.R. Fleming, and S. Mukamel, J. Chem. Phys. 98, 5314 (1993). Friction Effects and Barrier Crossing, M. Cho, Y. Hu, S.J. Rosenthal, DC.Todd, M. Du, and G.R. Fleming, Activated Barrier Crossing Applications in Physics, Chemistry, and Biology, G.R. Fleming and P. H€anggi, Eds.; World Scientific, River Edge, NJ, p 143 (1993). Kinetic Basicities of Aqueous Binary Mixtures: A Surprisingly Good Linear Correlation with the Gas Phase Basicity of the Organic Cosolvent, E. Pines and G.R. Fleming, Isr. J. Chem. 33, 179 (1993). Femtosecond Wave Packet and Chemical Reaction Dynamics of Iodine in Solution: Tunable Probe Study of Motion Along the Reaction Coordinate, N.F. Scherer, D.M. Jonas, and G.R. Fleming, J. Chem. Phys. 99, 153 (1993). Off-Resonant Transient Birefringence in Liquids, M. Cho, M. Du, N.F. Scherer, G.R. Fleming, and S. Mukamel, J. Chem. Phys. 99, 2410 (1993). Femtosecond Time-Resolved Fluorescence Spectroscopy of Bacteriorhodopsin: Direct Observation of Excited State Dynamics in the Primary Step of Proton Pump Cycle, M. Du and G.R. Fleming, Biophys. Chem. 48, 101 (1993). Inhomogeneous Electron Transfer Kinetics in Reaction Centers of Bacterial Photoysnthesis, Z. Wang, R.M. Pearlstein, Y. Jia, G.R. Fleming, and J.R. Norris, Chem. Phys. 176, 421 (1993). Photochemical and Photoelectrochemical Conversion and Storage of Solar Energy, Z. Wang, T.J. DiMagno, C.-K. Chan, M. Popov, J. Tang, D. Hanson, M. Schiffer, G.R. Fleming, and J.R. Norris, Proceedings of the Ninth International Conference on Photochemical Conversion and Storage of Solar Energy, Z.W. Tian, and Y. Cao, Eds.; International Academic Publishers, Beijing, pp 1-10 (1993). Ground State Wavepackets in Pump-Probe Spectroscopy, D.M. Jonas, SE. Bradforth, S.A. Passino, and G.R. Fleming, Proceedings of the Royal Netherlands Academy Colloquium on Femtosecond Reaction Dynamics, North Holland, Amsterdam, The Netherlands, p 133 (1994). Studies of the Inertial Component of Polar Solvation Dynamics, M. Maroncelli, P.V. Kumar, A. Papazyan, M.L. Horng, S.J. Rosenthal, and G.R. Fleming, Ultrafast Reaction Dynamics, and Solvent Effects, Y. Gauduel, and P.J. Rossky, Eds.; American Institute of Physics, New York, pp 310-333 (1994). dx.doi.org/10.1021/jp2009594 |J. Phys. Chem. A 2011, 115, 3614–3629



185. Primary Charge Separation in Mutant Reaction Centers of Rb Capsulatus, Y. Jia, T.J. DiMagno, C.K. Chan, Z. Wang, M.S. Popov, M. Du, D.K. Hanson, M. Schiffer, J. Norris, and G.R. Fleming, J. Phys. Chem. 97, 13180 (1993). 186. A Fluorescence Study of Hexameric Helical Peptide Systems, Y. Hu, T.-M. Chin, G.R. Fleming, and N.C. Yang, J. Phys. Chem. 97, 13330 (1993). 187. The Primary Steps of Photosynthesis, G.R. Fleming, and R. van Grondelle, Physics Today, 48 (1994). 188. Vibrationally Abrupt Pulses in Pump-Probe Spectroscopy. D.M. Jonas and G.R. Fleming, Ultrafast Processes in Chemistry, and Photobiology (Chemistry in the 21st Century series IUPAC), M.A. El-Sayed, I. Tanaka, and Y Molin, Eds.; Blackwell Science, Oxford, pp 225-256 (1995). 189. Solvation Dynamics in Methanol: Experimental and Molecular Dynamics Simulation Studies. S.J. Rosenthal, R. Jimenez, G.R. Fleming, P.V. Kumar, and M. Maroncelli, J. Mol. Liq. 60, 25-56 (1994). 190. Fifth-Order Three-Pulse Scattering Spectroscopy: Can We Separate Homogeneous and Inhomogeneous Contributions to Optical Spectra? M. Cho and G.R. Fleming, J. Phys. Chem. 98, 3478-3485 (1994). 191. Direct Observation of Ultrafast Energy Transfer Processes in Light Harvesting Complex II. M. Du, X. Xie, L. Mets, and G.R. Fleming, J. Phys. Chem. 98, 4736-4741 (1994). 192. Instantaneous Normal Mode Analysis of Liquid Water. M. Cho, G.R. Fleming, S. Saito, I. Ohmine, and R. Stratt, J. Chem. Phys. 100, 6672-6683 (1994). 193. Self-Quenching of 1-Naphthol: Connection Between Time Resolved and Steady State Measurements. E. Pines and G.R. Fleming, Chem. Phys. 183, 393-402 (1994). 194. Ti:Sapphire Regenerative Amplifier for Ultrashort HighPower Multikilohertz Pulses without an External Stretcher. T. Joo, Y. Jia, and G.R. Fleming, Opt. Lett. 20, 389-391 (1995). 195. Femtosecond Solvation Dynamics of Water. R. Jimenez, G.R. Fleming, P.V. Kumar, and M. Maroncelli. Nature 369, 471-473 (1994). 196. Femtosecond Spectroscopic Studies of Barrierless Excited State Decay of Triphenylmethane Dye Molecules in Alcohol Solutions. Mei Du, Yiwei Jia, and Graham Fleming, Ultrafast Phenomena IX, Vol. 60, Springer, New York, pp 515-516 (1994). 197. Ultrafast Energy Transfer in the Core Light Harvesting Complex of the Photosynthetic Bacterium Rhodobacter sphaeroides Observed by Flourescence Upconversion. S. Bradforth, R. Jimenez, V. Fidler, G. Fleming, S. Nagarajan, J. Norris, F. van Mourik, and R. von Grondelle, Ultrafast Phenomena IX, Vol. 60, Springer, New York (1994) pp. 441-442. 198. Femtosecond Dynamics in Polar Liquids, T. Joo, M. Cho, J. Yu, Y. Jia, and G.R. Fleming, Ultrafast Phenomena IX, Vol. 60, Springer, New York, pp 72-76 (1994). 199. Femtosecond Wavepacket Spectroscopy: Influence of Temperature, Wavelength, and Pulse Duration, D.M. Jonas, SE. Bradforth, S.A. Passino, and G.R. Fleming, J. Phys. Chem. 99, 2594-2608 (1995). 200. Ultrafast Liquid Dynamics Studied by Third and Fifth Order Three Pulse Photon Echoes, T. Joo, Y. Jia, and G.R. Fleming, J. Chem. Phys. 102, 4063-4068 (1995).

201. Observation of Ultrafast Energy Transfer from the Accessory Bacteriochlorophylls to the Special Pair in Photosynthetic Reaction Centers, Y. Jia, D.M. Jonas, T. Joo, Y. Nagasawa, M.J. Lang, and G.R. Fleming, J. Phys. Chem. 99, 6263-6266 (1995). 202. Time-Resolved Fluorescence Study of a Calcium-induced Conformational Change in Prothrombin Fragment 1, M. Hof, G.R. Fleming, and V. Fidler, Proteins: Struct., Funct., Genet. 24, 485-494 (1996). 203. Ultrafast Spectroscopy of Photosynthetic Systems. R. Jimenez, and G.R. Fleming, Biophysical Techniques in Photosynthesis, J. Amesz and A. J. Hoff, Eds.; Advances in Photosynthesis 3, pp 63-73 (1996). 204. Energy Transfer and Trapping in Photosystem I Reaction Centers from Cyanobacteria, L. DiMagno, C.-K. Chan, Y. Jia, M.J. Lang, J. R. Newman, L. Mets, G.R. Fleming, and R. Haselkorn, Proc. Natl. Acad. Sci. U.S.A. 92, 2715-2719 (1995). 205. Competition Between Energy and Phase Relaxation in Electronic Curve Crossing Processes, J.M. Jean and G.R. Fleming, J. Chem. Phys. 103, 2092-2101 (1995). 206. Femtosecond to Nanosecond Solvation Dynamics in Pure Water and Inside the γ-Cyclodextrin Cavity. S. Vajda, R. Jimenez, S.J. Rosenthal, V. Fidler, G.R. Fleming, and E.W. Castner, Jr., J. Chem. Soc., Faraday Trans. 91, 867-873 (1995). 207. Excitation Transfer in the Core Light Harvesting Complex (LH-1) of Rhodobacter sphaeroides: An Ultrafast Fluorescence Depolarization, and Annihilation Study, SE. Bradforth, R. Jimenez, F. van Mourik, R. van Grondelle, and G.R. Fleming, J. Phys. Chem. 99, 16179-16191 (1995). 208. Dynamics in Isolated Bacterial Light Harvesting Antenna (LH2) of Rhodobacter sphaeroides at Room Temperature, T. Joo, Y. Jia, J-Y. Yu, D.M. Jonas, and G. R. Fleming, J. Phys. Chem. 100, 2399-2409 (1996). 209. Ultrafast Energy Transfer within the Bacterial Photosynthetic Reaction Center, D.M. Jonas, M.J. Lang, Y. Nagasawa, SE. Bradforth, S.N. Dikshit, R. Jimenez, T. Joo, and G.R. Fleming, Proceedings of the Feldafing III Workshop - Reaction Centers of Photosynthetic Bacteria Structure and Dynamics, Munich, Germany, March 1995. 210. Electronic Excitation Transfer in Bacterial Light Harvesting Complexes. SE. Bradforth, R. Jimenez, S.N. Dikshit, and G.R. Fleming, Proceedings of the Xth International Photosynthesis Congress, Montpellier, France, August 2025,1995, In: Photosynthesis: From Light to Biosphere, Vol. I, P. Mathis, Ed.; Kluwer, Norwell, MA, pp 23-28 (1995). 211. Prompt Solvent-Induced Electronic Predissociation of FemtoSecond Pumped Iodine: A Computational Study, M. Ben-Nun, R.D. Levine, D.M. Jonas, and G.R. Fleming, Chem. Phys. Lett. 245, 629-638 (1995). 212. Singlet Energy Transfer from Carotenoids in Purple Bacterial Light Harvesting Antenna, SE. Bradforth, R. Jimenez, M. Ricci, S.N. Dikshit, and G.R. Fleming, Femtochemistry Ultrafast Chemical and Physical Processes in Molecular Systems (Proceedings of Femtochemistry: The Lausanne Conference, 1995), M. Chergui, Ed., World Scientific, New Jersey, p 427 (1996). 213. Donor-Acceptor Interaction and Photochemistry of Polymethylene-linked Bichromophores in Solution, S-L. 3620



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Zhang, M.J. Lang, S. Goodman, C. Durnell, V. Fidler, G.R. Fleming, and N.-C. Yang, J. Am. Chem. Soc. 118, 9042-9051 (1996). Electronic Excitation Transfer in the LH2 Complex of Rhodobacter sphaeroides, R. Jimenez, S.N. Dikshit, SE. Bradforth, and G.R. Fleming, J. Phys. Chem. 100, 68256834 (1996). Third-Order Nonlinear Time Domain Probes of Solvation Dynamics, T. Joo, Y. Jia, J-Y. Yu, M.J. Lang, and G.R. Fleming, J. Chem. Phys. 104, 6089-6108 (1996). Femtosecond Chemical Dynamics in Condensed Phases, G.R. Fleming, T. Joo, and M. Cho, Adv. Chem. Phys. 101, 141-183 (1997). Chromophore Solvent Dynamics, G.R. Fleming, and M. Cho, Annu. Rev. Phys. Chem. 47, 109-134 (1996). The Integrated Photon Echo, and Solvation Dynamics, M. Cho, J-Y. Yu, T. Joo, Y. Nagasawa, S.A. Passino, and G.R. Fleming, J. Phys. Chem. 100, 11944-11953 (1996). Pump-Probe Polarization Anisotropy Study of Femtosecond Energy Transfer within the Photosynthetic Reaction Center of Rhodobacter sphaeroides R26, D.M. Jonas, M.J. Lang, Y. Nagasawa, T. Joo, and G.R. Fleming, J. Phys. Chem. 100, 12660-12673 (1996). Internal Conversion and Energy Transfer Dynamics of Spheroidene in Solution and in the LH-1, and LH-2 Light Harvesting Complexes, M. Ricci, SE. Bradforth, R. Jimenez, and G.R. Fleming, Chem. Phys. Lett. 259, 381390 (1996). Solvent Induced Nonadiabatic Transitions in Iodine: An Ultrafast Pump-Probe Computational Study, M. Ben-Nun, R.D. Levine, and G.R. Fleming, J. Chem. Phys. 105, 3035-3056 (1996). Photosynthetic Light Harvesting: Structure and Dynamics in the Antenna of Purple Photosynthetic Bacteria, G.R. Fleming, SE. Bradforth, R. Jimenez, and S.N. Dikshit, Proceedings 50th Annversary Conference, Korean Chemical Society, Seoul, pp 100-105 (1996). Photon Echo Measurements in Liquids Using Pulses Longer Than the Electronic Dephasing Time, S.A. Passino, Y. Nagasawa, T. Joo, and G.R. Fleming, Ultrafast Phenomena X, Vol. 62, Springer, New York, pp 199-200 (1996). Femtosecond 3 Pulse Stimulated Photon Echo Peak Shift Measurements of Organic Polymer Glass from Room Temperature to 30 K, Y. Nagasawa, S.A. Passino, T. Joo, and G.R. Fleming, Ultrafast Phenomena X, Vol. 62, Springer, New York, pp 211-212 (1996). Energy Transfer in the Photosynthetic Reaction Center, D.M. Jonas, M.J. Lang, Y. Nagasawa, and G.R. Fleming, Ultrafast Phenomena X, Vol. 62, Springer, New York, pp 336-337 (1996). Soluble Synthetic Multi-Porphyrin Arrays. 2. Photodynamics of Energy-Transfer Processes, J-S. Hsiao, B.P. Krueger, R.W. Wagner, J.K. Delaney, D.C. Mauzerall, G. R. Fleming, J.S. Lindsey, D.F. Bocian, and R.J. Donohoe, J. Am. Chem. Soc. 118, 11181-11193 (1996). Three-Pulse Echo Peak Shift Studies of Polar Solvation Dynamics, S.A. Passino, Y. Nagasawa, T. Joo, and G.R. Fleming, J. Phys. Chem A, 101, 725-731 (1997). Two-Dimensional Raman Spectroscopy of the Intermolecular Modes of Liquid CS2, A. Tokmakoff, and G.R. Fleming, J. Chem. Phys. 106, 2569-2582 (1997).

229. Temperature Dependence of Optical Dephasing in an Organic Polymer Glass (PMMA) from 300 to 30 K, Y. Nagasawa, S.A. Passino, T. Joo, and G.R. Fleming, J. Chem. Phys. 106, 4840-4852 (1997). 230. Electron Transfer and Solvent Dynamics in Two and Three State Systems, M. Cho and G.R. Fleming, Adv. Chem. Phys. 107, 311-370 (1999) 231. Ultrafast Spectroscopy of Excitation Transfer Dynamics in Biological Systems, R. Jimenez, and G.R. Fleming, Femtochemistry, and Femtobiology: Ultrafast Reaction Dynamics at Atomic-Scale Resolution, (Proceedings of Nobel Symposium 101), V. Sundstr€om, Ed.; Imperial College Press, Stockholm, pp 701-723 (1997). 232. Three Pulse Photon Echo Measurements on LH1 and LH2 Complexes of Rhodobacter sphaeroides: A Nonlinear Spectroscopic Probe of Energy Transfer, R. Jimenez, F. van Mourik, J. Y. Yu, and G.R. Fleming, J. Phys. Chem. B 101, 7350-7359 (1997). 233. Electronic Interactions in Photosynthetic Light Harvesting Complexes: The Role of Carotenoids, G.D. Scholes, R.D. Harcourt, and G.R. Fleming, J. Phys. Chem. B 101, 7302-7312 (1997). 234. Intrinsic Optical Heterodyne Detection of a TwoDimensional Fifth Order Raman Response, A. Tokmakoff, M. J. Lang, D.S. Larsen, and G.R. Fleming, Chem. Phys. Lett. 272, 48-54 (1997). 235. Three Pulse Stimulated Photon Echo Experiments as a Probe of Polar Solvation Dynamics: Utility of Harmonic Bath Models, S.A. Passino, Y. Nagasawa, and G.R. Fleming, J. Chem. Phys. 107, 6094-6108 (1997). 236. Two-Dimensional Raman Spectroscopy of Vibrational Interactions in Liquids, A. Tokmakoff, M.J. Lang, D.S. Larsen, G.R. Fleming, V. Chernyak, and S. Mukamel, Phys. Rev. Lett. 79, 2702-2705 (1997). 237. The Interaction of Solutes with Their Environments, G.R. Fleming, S.A. Passino, and Y. Nagasawa, Philos. Trans. R. Soc. London, Ser. A 356, 389-404 (1998). 238. Photo-Induced Electron Transfers through σ-Bonds in Solution, N.-C. Yang, S-L. Zhang, M.J. Lang, S. Goodman, C. Durnell, H.L. Carrell, R.M. Garavito, and G.R. Fleming, Adv. Chem. Phys. 106, 645-666 (1999). 239. Electronic Excitation Transfer from Carotenoid to Bacteriochlorophyll in the Purple Bacterium Rhodopseudomonas acidophila, B.P. Krueger, G.D. Scholes, R. Jimenez, and G.R. Fleming, J. Phys. Chem. B 102, 2284-2292 (1998) 240. Three Pulse Echo Peak Shift Measurements on B820 Subunit of LH1 of Rhodospirillum rubrum, J-Y. Yu, Y. Nagasawa, R. van Grondelle, and G.R. Fleming, Chem. Phys. Lett. 280, 404-410 (1997). 241. Femtosecond Spectroscopy of Photosynthetic LightHarvesting Systems, G.R. Fleming and R. van Grondelle, Curr. Opin. Struct. Biol. 7, 738-748 (1997). 242. Direct Measurement of Intrinsic Proton Transfer Rates in Diffusion Controlled Reactions, E. Pines, B-Z. Magnes, M.J. Lang, and G.R. Fleming, Chem. Phys. Lett. 281, 413- 420 (1997). 243. The Intermolecular Interaction Mechanisms in Liquid CS2 at 295, and 165 K Probed with Two-Dimensional Raman Spectroscopy, A. Tokmakoff, M.J. Lang, X.J. Jordanides, and G.R. Fleming, Chem. Phys. 233, 231242, (1998). 3621




244. Excited State Dynamics of Chromophores in Glasses and in Photosynthetic Proteins, Y. Nagasawa, J.-Y. Yu, M. Cho, and G.R. Fleming, Faraday Discuss. 108, 2334 (1997). 245.a Commentary: Protein Dynamics and Photon Echoes, G.R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 95, 1516115162 (1998) 245.b Solute-Solvent Interaction Dynamics Studied by Photon Echo Spectroscopies in Polymer Glasses, Y. Nagasawa, J.-Y. Yu, and G.R. Fleming, J. Chem. Phys. 109, 6175-6183 (1998) . 246. Calculation of Couplings and Energy Transfer Pathways Between the Pigments of LH2 by the Ab Initio Transition Density Cube Method, B.P. Krueger, G.D. Scholes, and G.R. Fleming, J. Phys. Chem. B 102, 5378-5386 (1998). 247. Three Pulse Photon Echo Measurements on the Accessory Pigments in the Reaction Center of Rb. Sphaeroides, M.-L. Groot, J.Y. Yu, R. Agarwal, J. R. Norris, and G. R. Fleming. J. Phys. Chem. B 102, 5923 (1998). 248. Aqueous Solvation Dynamics Studied by Photon Echo Spectroscopy, M.J. Lang, X. Song, X. Jordanides, and G. R. Fleming, J. Chem. Phys. 110, 5884-5892 (1999) 249. Two-Color, Three-Pulse Photon Echos as a Probe of Electronic Coupling in Molecular Complexes, M. Yang and G.R. Fleming, J. Chem. Phys. 110, 2983-2990 (1999). 250. Solvation Dynamics in Protein Environments Studied by Photon Echo Spectroscopy, X. J. Jordanides, M. J. Lang, X. Song, and G. R. Fleming, J. Phys. Chem. B 103, 79958005 (1999). 251. Ab Initio Molecular Orbital Calculations of Electronic Couplings in the LH2 Bacterial Light-Harvesting Complex of Rps. Acidophila, G.D. Scholes, I.R. Gould, R. J. Cogdell, and G.R. Fleming, J. Phys. Chem. B 103, 25432553 (1999). 252. Three Pulse Echo Peak Shift Measurements, and Ab Initio Excited State Calculations of Bacterial Light Harvesting Function, G.D. Scholes, I.R. Gould, J-Y. Yu, G.R. Fleming, Ultrafast Phenomena XI, Springer, New York, 658-662 (1998). 253. Fluorescence Upconversion and Ab Initio Studies of the Light Harvesting Function of Carotenoids in Bacterial Light Harvesting Antenna, B.P. Krueger, G.D. Scholes, I. R. Gould, and G.R. Fleming, Ultrafast Phenomena XI, Springer, New York, 666-668 (1998). 254. Studies of Molecular Interactions, and Collective Liquid Motion with Two-Dimensional Raman Spectroscopy, A. Tokmakoff, M.J. Lang, D.S. Larsen, X.J. Jordanides, G.R. Fleming, Ultrafast Phenomena XI, Springer, New York, 538-540 (1998). 255. Photon Echo Studies of Solute-Solvent Interaction Dynamics in Polymer Glasses, Y. Nagasawa, J.-Y. Yu, and G.R. Fleming, Ultrafast Phenomena XI, Springer, New York, 556-558 (1998). 256. The Light Harvesting Process in Purple Bacteria, B.P. Krueger, G.D. Scholes, J.-Y. Yu, G.R. Fleming, Acta Phys. Pol., A, (Jablonski Conference), 95, 63-83 (1999). 257. Three Pulse Photon Echoes for Model Reactive Systems, M. Yang, K. Ohta, and G. Fleming, J. Chem. Phys. 110, 10243-10252 (1999). 258. Fifth Order Two Dimensional Raman Spectra of CS2 Are Dominated by Third Order Cascades, D.A. Blank,

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L.J. Kaufman, and G.R. Fleming, J. Chem. Phys. 111, 3105-3114 (1999). Third Order Nonlinear Optical Response of Energy Transfer Systems, M. Yang and G.R. Fleming, J. Chem Phys. 111, 27-39 (1999). Ultrafast Energy Transfer in LHC-II Revealed by Three Pulse Photon Echo Peak Shift Measurements, R. Agarwal, B. P. Krueger, G.D. Scholes, M. Yang, J. Yom, L. Mets, and G.R. Fleming, J. Phys Chem B 104, 2908-2918 (2000). Three Pulse Photon Echo Studies of Non-Dipolar Solvation: Comparison with a Viscoelastic Model, D. Larsen, K. Ohta, and G.R. Fleming, J. Chem. Phys. 111, 8970-8979 (1999). Probing Solvation and Reaction Coordinates of Ultrafast Photoinduced Electron Transfer Reactions Using Nonlinear Spectroscopies: Rhodamine 6G in ElectronDonating Solvents, Q. Xu, G.D. Scholes, M. Yang, and G.R. Fleming, J. Phys. Chem. A 103, 10348-10358 (1999). Carotenoid Mediated B800-B850 Coupling in LH2, B.P. Krueger, G.D. Scholes, I.I.R. Gould, and G.R. Fleming. PhysChemComm 8 (1999). Observation of the S1 State of Spheroidene in LH2 by Two-Photon Fluorescence Excitation, B.P. Krueger, J. Yom, P.J Walla, and G.R. Fleming, Chem. Phys. Lett. 310, 57-64 (1999). Intrinsic Cascading Contributions to the Fifth-, and Seventh-Order Electronically Off-Resonant Raman Spectroscopies, M. Cho, D.A. Blank, J. Sung, K. Park, S. Hahn, and G.R. Fleming, J. Chem. Phys. 112, 20822094 (2000). Light Harvesting and Energy Transfer in Laser-Dye Labeled Poly(aryl ether) Dendrimers, A. Adronov, S.L. Gilat, J.M.J. Frechet, K. Ohta, F.V.R. Neuwahl, and G.R. Fleming, J. Am. Chem. Soc. 122, 1179-1185 (2000). On the Mechanism of Light Harvesting in Photosynthetic Purple Bacteria: B800 to B850 Energy Transfer, G. D. Scholes, and G.R. Fleming, J. Phys. Chem. B 104, 1854-1868 (2000). The Origin of Line Broadening in the Electronic Absorption Spectra of Conjugated Polymers: Three Pulse Echo Studies of MEH-PPV in Toluene, G. D. Scholes, D.S. Larsen, G.R. Fleming G. Rumbles, and P.L. Burn, Phys. Rev. B 61, 13670-13678 (2000). Two Photon Excitation Spectrum of LHC II and Fluorescence Upconversion after One- and Two-Photon Excitation of the Carotenoids, P.J. Walla, J. Yom, B.P. Krueger, and G.R. Fleming, J. Phys. Chem. B 104, 19, 4799-4806 (2000). Third-Order Nonlinear Optical Response and Energy Transfer in Static Disordered Systems, M. Yang, and G.R. Fleming, J. Chem. Phys. 113, 2823-2840 (2000). Direct Fifth-Order Electronically Non-Resonant Raman Scattering from CS2 at Room Temperature, D.A. Blank, L.J. Kaufman, and G.R. Fleming, J. Chem. Phys. 113, 771-778 (2000). The Mechanism of Energy Transfer in the Bacterial Photosynthetic Reaction Center, X. J. Jordanides, G.D. Scholes and G.R. Fleming, J. Phys. Chem. B 105, 16521669 (2001). Excitation Energy Transfer in Condensed Media, C.-P. Hsu, M. Head-Gordon, T. Head-Gordon, and G.R. Fleming, J. Chem. Phys. 114, 3065-3072 (2001). dx.doi.org/10.1021/jp2009594 |J. Phys. Chem. A 2011, 115, 3614–3629



274. Femtosecond Dynamics of the Forbidden Carotenoid S1 State in Light-Harvesting Complexes of Purple Bacteria Observed after Two-Photon Excitation, P.J. Walla, P.A. Linden, C.-P. Hsu, G.D. Scholes, and G.R. Fleming, Proc. Natl.l Acad. Sci. U.S.A. 97, 10808-10813 (2000). 275. Excited-State Kinetics of the Carotenoid S1 State in LHC II and Two-Photon Excitation Spectra of Lutein and ssCarotene in Solution: Efficient Car S1 f Chl Electronic Energy Transfer via Hot S1 States?, P.J. Walla, P.A. Linden, K. Ohta, and G.R. Fleming, J. Phys. Chem. A, (Mataga Festschrift Issue), 106, 1909-1916 (2002). 276. Polarization Selectivity in Fifth Order Electronically Non-Resonant Raman Scattering from CS2, L.J. Kaufman, D.A. Blank, and G.R. Fleming, J. Chem. Phys. 114, 23122331 (2001). 277. Adapting the F€ orster Theory of Energy Transfer for Modeling Dynamics in Aggregated Molecular Assemblies, G.D. Scholes, X.J. Jordanides, and G.R. Fleming, J. Phys. Chem. B 105, 1640-1651 (2001). 278. Three Pulse Photon Echo Peak Shift Study of the B800 Band of the LH2 Complex of Rps. Acidophila at Room Temperature: A Coupled Master Equation and Nonlinear Optical Response Function Approach, R. Agarwal, M. Yang, Q.-H. Xu, and G.R. Fleming, J. Phys. Chem. B 105, 1887-1894 (2001). 279. Influence of Intramolecular Vibrations in Third-Order, Time-Domain Resonant Spectroscopies: I. Experiments, D.S. Larsen, K. Ohta, Q.-H. Xu, M. Cyrier, and G.R. Fleming, J. Chem. Phys. 114, 8008-8019 (2001). 280. Influence of Intramolecular Vibrations in Third-Order, Time Domain Resonant Spectroscopies: II. Numerical Calculations, K. Ohta, D.S. Larsen, M. Yang, and G.R. Fleming, J. Chem. Phys. 114, 8020-8039 (2001). 281. Fs-Transient Absorption and Fluorescence Upconversion after Two-Photon Excitation of Carotenoids in Solution and in LHC II, P.J. Walla, P.A. Linden, and G. R. Fleming, Ultrafast Phenomena XII, Springer, New York, pp 671-673 (2001). 282. Quantitative Modeling of Ultrafast Energy Transfer Dynamics in the Photosynthetic Apparatus, G.D. Scholes, X.J. Jordanides, and G.R. Fleming, Ultrafast Phenomena XII, Springer, New York, pp 674-676 (2001). 283. Disorder in Photosynthetic Light Harvesting Complexes: A Three-Pulse Photon Echo Peak Shift Study of the B800 Band of the LH2 Complex, R. Agarwal, M. Yang, and G.R. Fleming, Ultrafast Phenomena XII, Springer, New York, pp 653-655 (2001). 284. Polarized and Magic Angle Fifth-Order 2D Electronically Non-Resonant Raman Scattering from CS2, D.A. Blank, L.J. Kaufman, and G.R. Fleming. Ultrafast Phenomena XII, Springer, New York, pp 513-515 (2001). 285. Fifth-Order Electronically Non-Resonant Raman Scattering: Two Dimensional Fourier Deconvolution, L.J. Kaufman, J.-Y. Heo, G.R. Fleming, J. Sung, and M. Cho, Chem. Phys. 266, 251 (2001). 286. An Unusual Pathway of Excitation Energy Deactivation in Carotenoids: Singlet-to-Triplet Conversion on an Ultrafast Time scale in a Photosynthetic Antenna, G.C. Gradinaru, J.T.M. Kennis, E. Papagiannakis, I.H.M. van Stokkum, R.C. Cogdell, G.R. Fleming, R.A. Niederman, and R. van Grondelle. Proc. Natl. Acad. Sci. U.S.A. 98, 2364-2369 (2001).

287. Excitation Energy Transfer in Dimeric Light-Harvesting Complex I: A Combined Streak-Camera/Fluorescence Upconversion Study, B. Gobets, J.T.M. Kennis, J.A. Ihalainen, M. Brazzoli, R.Croce, I H.M. van Stokkum, R. Bassi, J.P. Dekker, H. van Amerongen, G.R. Fleming, and R. van Grondelle, J. Phys. Chem. B 105, 1013210139 (2001). 288. The Mechanism of Energy Transfer in the Antenna of Photosynthetic Purple Bacteria, M. Yang, R. Agarwal, and G.R. Fleming, J. Photochem. Photobiol., Part A, (Porter Issue), 142, 107-119 (2001). 289. Fifth-Order Two-Dimensional Raman Spectroscopy of the Intermolecular, and Vibrational Dynamics in Liquids, D.A. Blank, G.R. Fleming, M. Cho, and A. Tokmakoff. Ultrafast Infrared and Raman Spectroscopy, (Practical Spectroscopy, Vol 26), M.D. Fayer, Ed.; Marcel Dekker, New York, Ch. 10, pp 437-472 (2001). 290. Light Harvesting by Chlorophylls and Carotenoids in the Photosystem I Core Complex of Synechoccus Elongatus: A Fluorescence Upconversion Study, J.T.M. Kennis, B. Gobets, I.H.M. van Stokkum, J.P. Dekker, R. van Grondelle, and G.R. Fleming, J. Phys. Chem. B 105, 44854494 (2001). 291. Heterodyne Detected Transient Grating Spectroscopy in Resonant and Non-Resonant Systems Using A Simplified Diffractive Optics Method, Q.-H. Xu, Y.-Z. Ma, and G.R. Fleming, Chem. Phys. Lett. 338, 254-262 (2001). 292. Ultrafast Exciton Dynamics of J Aggregates in Room Temperature Solution Studied by Third-Order Nonlinear Optical Spectroscopy and Numerical Simulation Based on Exciton Study, K. Ohta, M. Yang, and G.R. Fleming, J. Chem Phys. 115, 7609-7621 (2001). 293. Influence of Phonons on Exciton Transfer Dynamics: Comparison of the Redfield, Forster, and Modified Redfield Equations, M. Yang and G.R. Fleming. Chem. Phys. 275, 355-372 (2002). Due to several conversion errors made by publisher, the paper was reprinted in Chem. Phys. 282, 161 180 (2002). 294. Isomerization Dynamics of 1,10 -Diethyl-4, 40 - Cyanine (1144-C) Studied by Different Third Order Nonlinear Spectroscopic Measurements, Q.-H. Xu and G.R. Fleming. J .Phys Chem. A 105, 10187-10195 (2001). 295. Wavelength Dependent Resonant Homodyne, and Heterodyne Transient Grating Spectroscopy with a Diffractive Optics Method: Solvent Effect on the Third Order Signal, Q.-H. Xu, Y.-Z. Ma, I. Stiopkin, and G.R. Fleming, J. Chem Phys. 116, 9333-9340 (2002) 296. Different Real and Imaginary Components of the Resonant Third-Order Polarization Revealed by Optical Heterodyne Detected Transient Grating (OHD-TG) Spectroscopic Studies in Crystal Violet: Model and Experiment, Q.-H. Xu, Y.-Z. Ma, and G.R. Fleming, J. Phys. Chem. A 106, 10755-10763 (2002). 297. The Role of the S1 State of Carotenoids in Photosynthetic Energy Transfer: The Light Harvesting Complex II of Purple Bacteria, C.-P. Hsu, P.J. Walla, M. Head-Gordon, and G.R. Fleming. J. Phys. Chem. B 105, 11016-11024 (2001). 298. Two-Color, Three Pulse Photon Echo Peak Shift Spectroscopy, R. Agarwal, B.S. Prall, A.H. Rizvi, M. Yang, and G.R. Fleming. J. Chem. Phys. 116, 6243-6252 (2002). 299. Photochemistry, G.R. Fleming, J. Longworth, and B. Krueger, Encyclopedia Brittanica, In Press. 3623




300. Heterodyne-Detected Fifth-Order Nonresonant Raman Scattering from Room Temperature CS2, L.J. Kaufman, J.-Y. Heo, L.D. Ziegler, and G.R. Fleming. Phys. Rev. Lett. 88, 207402(4) (2002). 301. Nature of Disorder and Intercomplex Energy Transfer in LH2 at Room Temperature: A Three Pulse Photon Echo Peak Shift Study, R. Agarwal, A.H. Rizvi, B.S. Prall, J.D. Olsen, C. Neil Hunter, and G.R. Fleming, J. Phys. Chem. A 106, 7573-7578 (2002). 302. Ultrafast Protein Dynamics of Bacteriorhodopsin Probed by Photon Echo and Transient Absorption Spectroscopy, J.T.M. Kennis, D.S. Larsen, K. Ohta, M. T. Facciotto, R.M. Glaeser, and G.R. Fleming, J. Phys. Chem. B 106, 6067-6080 (2002). 303. Chlorophyll Excitations in Photosystem I of Synechococcus elongatus, A. Damjanovic, H.M. Vaswani, P. Fromme, and G.R. Fleming, J. Phys. Chem. B 106, 10251-10261 (2002). 304. Two- Two Photon Excitation Study of Peridinin in Benzene and in the Peridinin Chlorophyll a-Protein (PCP), J. Zimmermann, P.A. Linden, H.M. Vaswani, R.G. Hiller, and G.R. Fleming, J. Phys. Chem. B 106, 9418-9423 (2002). 305. Heterodyne Detected Fifth-Order Nonresonant Raman Spectroscopy of CS2: Evidence for Anharmonic Coupling, L. J. Kaufman, Shinji Saito, Larry D. Ziegler, Iwao Ohmine, and G.R. Fleming, Ultrafast Phenomena XIII, R.D. Miller, M.M. Murnane, N.F. Scherer, and A.M. Weiner, Eds.; Springer, Berlin, pp 554-556 (2003). 306. Two-Color Three Pulse Photon Echo Peak Shift Spectroscopy, R. Agarwal, B.S. Prall, A.H. Rizvi, M. Yang, and G.R. Fleming, Ultrafast Phenomena XIII, R.D. Miller, M. M. Murnane, N.F. Scherer, and A.M. Weiner, Eds.; Springer, Berlin, pp 532-534 (2003). 307. Optical Heterodyne Detected Transient Grating (OHDTG) Studies on the Reactive and Non-Reactive Resonant Systems, Q.-H. Xu, Y.-Z. Ma, and G.R. Fleming, Ultrafast Phenomena XIII, R.D. Miller, M.M. Murnane, N.F. Scherer, and A.M. Weiner, Eds.; Springer, Berlin, pp 470-472 (2003). 308. Protein Dynamics of Bacteriorhodopsin Probed by Photon Echo and Transient Absorption Spectroscopy, J.T.M. Kennis, D.S. Larsen, K. Ohta, M. Faccioti, R.M. Glaeser, and G.R. Fleming, Ultrafast Phenomena XIII, R. D. Miller, M.M. Murnane, N.F. Scherer, and A.M. Weiner, Eds.; Springer, Berlin, pp 646-648 (2003). 309. Photochemistry of Dianthrylsilanes, A Study of σ,π*Interaction1, N.C. Yang, D.D.H. Yang, I.M. Steele, H. Li, Y.-Z. Ma, and G.R. Fleming, J. Am. Chem Soc. 125, 5107-5110 (2003). 310. Energy Transfer in Photosystem I of Cyanobacteria Synechococcus elongatus: Model Study with StructureBased Semiempirical Hamiltonian and Experimental Spectral Density, M. Yang, A. Damjanovic, H. Vaswani, and G.R. Fleming, Biophys. J. 85, 140-158 (2003). 311. Evidence for Direct Carotenoid Involvement in the Regulation of Photosynthetic Light Harvesting, Y.-Z. Ma, N. Holt, X.-P. Li, K.K. Niyogi, and G.R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 100, 4377-4382 (2003). 312. Quantum Chemical Evidence for an Intramolecular Charge Transfer State in the Carotenoid Peridinin of Peridinin-Chlorophyll-Protein, H.M. Vaswani, C.-P.

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Hsu, M. Head-Gordon, and G.R. Fleming, J. Phys. Chem. B 107, 7940-7946 (2003). Two-Dimensional Electronic Spectroscopy, G.R. Fleming, M. Yang, R. Agarwal, B.S. Prall, L.J. Kaufman, and F. Neuwahl, Bull. Korean Chem. Soc. (Proceedings of the First Symposium on Multi-Dimensional Vibrational Spectroscopy), 24, 1081-1090 (2003). Two-Color Transient Grating Spectroscopy of a TwoLevel System, K. Kwak, M. Cho, G.R. Fleming, R. Agarwal, and B.S. Prall, Bull. Korean Chem Soc. (Proceedings of the First Symposium on Multi-Dimensional Vibrational Spectroscopy), 24, 1069-1074 (2003). Ultrafast Carrier Dynamics in Single-Walled Carbon Nanotubes Probed by Femtosecond Spectroscopy, Y.-Z. Ma, J. Stenger, G.R. Fleming, S. Bachilo, B. Weisman, and R.E. Smalley, J. Chem. Phys. 120, 3368-3373 (2004). Charge-Transfer State as a Possible Signature of a Zeaxanthin-Chlorophyll Dimer in the Non-Photochemical Quenching Process in Green Plants, A. Dreuw, G.R. Fleming, and M. Head-Gordon, J. Phys Chem. B 107, 6500-6503 (2003). Construction of Kinetic Domains in Energy Trapping Processes and Application to a Photosynthetic Light Harvesting Complex, M. Yang, and G. R. Fleming, J. Chem. Phys. 119, 5614 (2003). Energy Transfer and Photosynthetic Light Harvesting, G.D. Scholes and G.R. Fleming, Adv. Chem. Phys. 132, 57-129 (2006). Chlorophyll Fluorescence Quenching by Xanthophylls, A. Dreuw, G.R. Fleming, and M. Head-Gordon. Phys. Chem. Chem. Phys. 5, 3247-3256, (2003). Carotenoid to Chlorophyll Energy Transfer in Light Harvesting Complex II from Arabidopsis thalaina Probed by Femtosecond Fluorescence Upconversion, N.E. Holt, J.T.M. Kennis, L. dall’Osto, R. Bassi, and G.R. Fleming, Chem. Phys. Lett. 379, 305-313 (2003). Tunable Two-Dimensional Femtosecond Spectroscopy, T. Brixner, I.V. Stiopkin, and G.R. Fleming, Opt. Lett. 29, 884-886 (2004). Two-Dimensional Optical Spectroscopy: Two-Color Photon Echoes of Electronically Coupled Phthalocyanine Dimers, B. Prall, D.Y. Parkinson, M. Yang, N. Ishikawa, and G.R. Fleming, J. Chem. Phys. 120, 25372540 (2004). Electronic Couplings and Energy Transfer Dynamics in the Oxidized Primary Electron Donor of the Bacterial Reaction Center, X.J. Jordanides, G.D. Scholes, W.A. Shapley, J.R. Reimers, and G.R. Fleming, J. Phys. Chem. B 108, 1753-1765 (2004). Femtosecond Pump-Probe Measurements of Solvation by Hydrogen-Bonding Interactions, E. Pines, D. Pines, Y.-Z. Ma, and G.R. Fleming, ChemPhysChem 13151327 (2004) The Mechanism of Energy Transfer and Trapping in Photosystem I, H.M. Vaswani, M. Yang, A. Damjanovic, and G.R. Fleming, Femtochemistry and Femtobiology, Ultrafast Events in Molecular Science, M.M. Martin and J.T. Hynes, Eds.; Elsevier, New York, pp 401-408 (2004). Femtosecond Solvation Dynamics of Hydrogen-Bonding Complexes, E. Pines, D. Pines, Y.-Z. Ma, and G.R. Fleming, Femtochemistry and Femtobiology, Ultrafast Events dx.doi.org/10.1021/jp2009594 |J. Phys. Chem. A 2011, 115, 3614–3629


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in Molecular Science, M.M. Martin and J.T. Hynes, Eds.; Elsevier, New York,. pp 185-188 (2004). Transient Absorption Study of Peridinin and PeridininChlorophyll a-Protein after Two-Photon Excitation, P.A. Linden, J. Zimmermann, T. Brixner, N.E. Holt, H. M. Vaswani, R.G. Hiller, and G.R. Fleming, J. Phys. Chem. B 108, 10340-10345 (2004). Toward an Understanding of the Mechanism of Nonphotochemical Quenching in Green Plants, N.E. Holt, G.R. Fleming, and K.K. Niyogi, Biochemistry 43, 82818289 (2004). Femtosecond Fluorescence Upconversion Studies of Light Harvesting by Beta Carotene in Oxygenic Photosynthetic Core Proteins, N.E. Holt, JTM Kennis, and G.R. Fleming, J. Phys. Chem. B 108, 19029-19035 (2004). Influence of Intramolecular Vibrations in Time-Domain Spectroscopies, D.S.Larsen, K. Ohta, M. Yang, Q.-H. Xu, and G.R. Fleming, Proceedings of XII UPS Conference, Recent Advances in Ultrafast Spectroscopy, L.S. Olschki, Ed.; pp 297-302 (2003). Phase-Stabilized Two-Dimensional Electronic Spectroscopy, T. Brixner, T. Mancal, I.V. Stiopkin, and G.R. Fleming, J. Chem. Phys. 121, 4221-4236 (2004). Ultrafast Fluorescence Depolarisation in Yellow Fluorescent Protein (YFP) Due to Its Dimerization, G. Jung, Y.-Z. Ma, B.S. Prall, and G.R. Fleming, ChemPhysChem 6, 1628-1632 (2005). Biographical Memoir of Lord Porter of Luddenham, G.R. Fleming and D. Phillips, Biographical Memoirs of Fellows of The Royal Society, London Vol. 50, pp 257-283 (2004). Probing Electronic Coupling in Electronically Coupled Heterodimer Complexes by Two-Color Three-Pulse Photon Echoes, T. Mancal and G.R. Fleming, J. Chem. Phys. 121, 10556-10565 (2004). Vibrational Coherence Transfer and Trapping as Sources for Long-Lived Quantum Beats in Polarized Emission from Energy Transfer Complexes. J.A. Cina and G.R. Fleming, J. Phys. Chem. A 108, 11196-11208 (2004). The Design of Natural Photosynthetic Antenna Systems, H.M. Vaswani, N.E. Holt, and G.R. Fleming, In Artificial Photosynthesis, Chapter 4, A. Collings, Ed.; Wiley VCH, New York, pp 67-85 (2005). Correlation of the Electronic Transitions in Semiconducting Single-Walled Carbon Nanotubes, Y.-Z. Ma, J. Stenger, S.L. Dexheimer, S.M. Bachilo, R.E. Smalley, R.B. Weisman, and G.R. Fleming, In Ultrafast Phenomena XIV, Springer, New York, pp 331-333 (2004). Femtosecond Pump Probe Measurements of Solvation Dynamics of Hydrogen-Bonding Complexes in Nonassociating Solvents, D. Pines, E. Pines, Y.-Z. Ma, and G.R. Fleming, In Ultrafast Phenomena XIV, Springer, New York, pp 425-427 (2004). Two-Dimensional Optical Heterodyne Spectroscopy of Molecular Complexes, I. Stiopkin, T. Brixner, and G.R. Fleming, In Ultrafast Phenomena XIV, Springer, New York, pp 554-556 (2004). Energy Transfer Pathways in Photosystem I Studied by One and Two Color Photon Echo Spectroscopy, H.M. Vaswani, J. Stenger, M. Yang, P. Fromme, and G.R. Fleming, In Ultrafast Phenomena XIV, Springer, New York, pp 586-588 (2004).

341. Quantum Mechanics for Plants, G.R. Fleming, and G.D. Scholes, News and Views, Nature 256-257 (2004). 342. Carotenoid Cation Formation and the Regulation of Photosynthetic Light Harvesting, N.E. Holt, D. Zigmantas, L. Valkunas, X.-P. Li, K.K. Niyogi, and G.R. Fleming, Science 307, 433-436 (2005). 343. Lord George Porter Medal Lecture: Carotenoid-Chlorophyll Complexes: Ready-to-Harvest, N.E. Holt, H.M. Vaswani, and G.R. Fleming, Pure Appl. Chem. 77, 925945 (2005). 344. Femtosecond Spectroscopy of Optical Excitations in Single-Walled Carbon Nanotubes, Y.-Z. Ma, L. Valkunas, S.L. Dexheimer, S.M. Bachilo, and G.R. Fleming, Phys. Rev. Lett. 94, 154702 (2005). 345. Two-Dimensional Spectroscopy of Electronic Couplings in Photosynthesis, T. Brixner, J. Stenger, H. Vaswani, M. Cho, R.E. Blankenship, and G.R. Fleming, Nature 434, 625-628 (2005). 346. Exciton Analysis in 2D Electronic Spectroscopy, M. Cho, H.M. Vaswani, T. Brixner, J. Stenger, and G.R. Fleming, J. Phys. Chem. B 109, 10542-10556 (2005). 347. Probing Correlated Spectral Motion from Absorption to Emission: Two Color Photon Echo of Nile Blue, B.S. Prall, D.Y. Parkinson, and G.R. Fleming, J. Chem. Phys. 123, 054515(1-13) (2005). 348. Two Dimensional Optical Three Pulse Photon Echo Spectroscopy I. Nonperturbative Approach to the Calculation of Spectra, T. Mancal, A.V. Pisliakov, and G.R. Fleming, J. Chem. Phys. 124, 234504-234510 (2006). 349. Two Dimensional Optical Three Pulse Photon Echo Spectroscopy II. Signatures of Coherent Electronic Motion, and Exciton Population Transfer in Dimer 2D Spectra, A.V. Pisliakov, T. Mancal, and G.R. Fleming, J. Chem. Phys. 124, 234505-234514 (2006). 350. Exciton Binding Energy in Semiconducting SingleWalled Carbon Nanotubes, Y.-Z. Ma, L. Valkunas, S.M. Bachilo, and G.R. Fleming, J. Phys. Chem. B 109, 1567115674 (2005). 351. The Integrated Photon Echo, and Solvation Dynamics. II. Peak Shifts and 2D Photon Echo of a Coupled Chromophore, M. Cho, and G.R. Fleming, J. Chem. Phys. 123, 114506(1-18) (2005). 352. Role of Electron-Transfer Quenching of Chlorophyll Fluorescence by Carotenoids in Non-Photochemical Quenching of Green Plants, A. Dreuw, G.R. Fleming, and M. Head-Gordon, Biochem. Soc. 33, 858-862 (2005). 353. Ultrafast Exciton Dynamics in Semiconducting SingleWalled Carbon Nanotubes, Y.-Z. Ma, L. Valkunas, S.L. Dexheimer, and G.R. Fleming, Mol. Phys. 104, 11791189 (2006). 354. Synthetic Micelle Sensitive to IR Light via a Two-Photon Process, A.P. Goodman, J.L. Mynar, Y.-Z. Ma, G.R. Fleming, and J.M.J. Frechet, J. Am. Chem. Soc. 127, 9952-9953 (2005). 355. Anti-Correlated Spectral Motion in Bis-Phthalocyanines: Evidence for Vibrational Modulation of Electronic Mixing, B.S. Prall, D.Y. Parkinson, N. Ishikawa, and G.R. Fleming, J. Phys. Chem. A 109, 10870-10879 (2005). 356. Triplet-Triplet Energy Transfer Coupling: Theory and Calculation, Z.-Q. Qiang, C.-P. Hsu, and G.R. Fleming, J. Chem. Phys. 124, 044506 (2006). 3625




357. Two-Dimensional Electronic Spectroscopy of Molecular Complexes, M. Cho, Tobias Brixner, Igor Stiopkin, Harsha Vaswani, and G.R. Fleming, J. Chin. Chem. Soc. 53, 1524 (2006). 358. Heterogeneous Exciton Dynamics Revealed by TwoDimensional Spectroscopy, I. Stiopkin, T. Brixner, M. Yang, and G.R. Fleming, J. Phys. Chem. B 110, 20032 (2006). 359. Spectroscopy of Zigzag Single-Walled Carbon Nanotubes: Comparing Femtosecond Transient Absorption Spectra with Ab Initio Calculations, Y.-Z. Ma, C.D. Spataru, L. Valkunas, S.M. Bachilo, S.L. Dexheimer, S.G. Louie, and G.R. Fleming, Phys. Rev. B 74, 085402 (2006). 360. Electronic 2D Spectroscopy of Light Harvesting, T. Brixner, J. Stenger, H.M. Vaswani, M. Cho, R.E. Blankenship, and G. R. Fleming, VII International Conference on Femtochemistry, A.W. Castleman and M.L. Kimble, Eds.; Elsevier, Amsterdam, The Netherlands, pp 331-336 (2006). 361. Two Dimensional Electronic Spectroscopy of the B800-B820 LH3 Light Harvesting Complex, D. Zigmantas, E. Read, T. Mancal, T. Brixner, A.T. Gardiner, and G. R. Fleming, VII International Conference on Femtochemistry, A.W. Castleman and M.L Kimble, Eds.; Elsevier, Amsterdam, The Netherlands, pp 372376 (2006). 362. Exciton-Exciton Annihilation in Single-Walled Carbon Nanotubes, L. Valkunas, Y.-Z. Ma, and G.R. Fleming, Phys. Rev. B 73, 115432 (2006). 363. An Investigation of the Excited State Structure of DCM via Ultrafast Electronic Pump/Vibrational Probe, A.J. Van Tassle, M.A. Prantil, and G.R. Fleming, J. Phys. Chem. B (Silbey Special Issue) 110, 18989-18995 (2006). 364. Commentary on “Flash Photolysis”, Proc. Roy. Soc. London, Ser. A 200, 284 (1950); In The Life, and Scientific Legacy of George Porter, D. Phillips, J. Barber, and G.R. Fleming, Eds; London Imperial College Press, London, p 305 (2006). 365. Nonlinear Femtosecond Optical Spectroscopy Techniques in Photosynthesis, D. Zigmantas, Y.-Z. Ma, E.L. Read, and G.R. Fleming, In Biophysical Techniques in Photosynthesis II, Advances in Photosynthesis, v. 26, T.J. Aartsma and J. Matysik, Eds.; Springer, Dordrecht, The Netherlands, pp 201-222 (2008). 366. One- and Two-Color Photon Echo Peak Shift Studies of Photosystem I, H.M. Vaswani, J. Stenger, P. Fromme, and G.R. Fleming, J. Phys. Chem. B 110, 26303-26312 (2006). 367. Temperature Effects on Femtosecond Transient Absorption Kinetics of Semiconducting Single-Walled Carbon Nanotubes, Y.-Z. Ma, L. Valkunas, S.M. Bachilo, G.R. Fleming, Phys. Chem. Chem. Phys. 8, 5689-5693 (2006). 368. Theory of Exciton-Charge Transfer State Coupled Systems, T. Mancal, L. Valkunas, G.R. Fleming, Chem. Phys. Lett. 432, 301-305 (2006). 369. Two-Dimensional Electronic Spectroscopy of the B800B820 Light-Harvesting Complex, D. Zigmantas, E.L. Read, T. Mancal, T. Brixner, A.T. Gardiner, R.J. Cogdell, and G.R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 103, 12672-12677 (2006). 370. Relaxation Paths and Dynamics of -apo-80 -Carotenal: An Ultrafast Electronic and Vibrational Study, A.J. Van Tassle, M.A Prantil, J.M. Burchfield, and G.R. Fleming,

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In Ultrafast Phenomena XV, Springer, Berlin, Germany, pp 510-512 (2007). Two Dimensional Fourier Transform Electronic Spectroscopy: Evolution of Cross Peaks in the FennaMatthews-Olson Complex, G.S. Engel, E.L. Read, T.R. Calhoun, T.K. Ahn, T. Mancal, R.E. Blankenship, and G.R. Fleming, In Ultrafast Phenomena XV, Springer, Berlin, Germany, pp 392-394 (2007). Probing Exciton Dynamics of Semiconducting SingleWalled Carbon Nanotubes Using Photon Echo Spectroscopy, Y.-Z. Ma, M.W. Graham, L. Valkunas, S.M. Bachilo, and G.R. Fleming, In Ultrafast Phenomena XV, Springer, Berlin, Germany, pp 686-688 (2007). Two Dimensional Optical Spectroscopy of Multichromophore Protein Complexes, G.R. Fleming, D. Zigmantas, E.L. Read, T. Mancal, and G.S. Engel, In Ultrafast Phenomena XV, Springer, Berlin, Germany, pp 326328 (2007). Evidence for Wavelike Energy Transfer: Quantum Coherence in Photosynthetic Systems, G.S. Engel, T. Calhoun, E.L. Read, T.K. Ahn, T. Mancal, R.E. Blankenship, and G.R. Fleming, Nature 446, 782 (2007). Y. Z. Ma, T. Hertel, Z.V.Vardeny, G. R. Fleming, and L. Valkunas, Ultrafast Spectroscopy of Carbon Nanotubes. In Carbon Nanotubes: New Topics in the Synthesis, Structure, Properties, and Application, M.S. Dresselhaus. G. Dresselhaus, and A. Jorio, Eds.; Springer, Berlin, Germany, Topics in Applied Physics, 111, 321-352 (2008). Determination of Electronic Mixing in Purple Synthetic Bacteria by Two-Color Three Pulse Photon Echo Peak Shift, D.Y. Parkinson, H. Lee, and G.R. Fleming, In Ultrafast Phenomena XV, Springer, Berlin, Germany, pp 537-539 (2007). Excited State Structural Dynamics of the Charge Transfer State of Peridinin, M.A. Prantil, A.J. Van Tassle, R.G. Hiller, and G.R. Fleming, Isr. J. Chem. 47, 17-24 (2007). Measuring Electronic Coupling in the Reaction Center of Purple Photosynthetic Bacteria by Two Color Three Pulse Photon Echo Peak Shift Spectroscopy, D.Y. Parkinson, H. Lee, and G.R. Fleming, J. Phys. Chem. B 111, 7449-7456 (2007). Coherence Dynamics in Photosynthesis: Protein Protection of Excitonic Coherence, H. Lee, Y.C. Cheng, and G. R. Fleming, Science 316, 1462 (2007). Cross-Peak-Specific Two-Dimensional Electronic Spectroscopy, E.L. Read, G.S. Engel, T. Calhoun, T. Mancal, T.K. Ahn, R.E. Blankenship, and G.R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 104, 14203-14208 (2007). Two-Photon Degradable Supramolecular Assemblies of Linear-Dendritic Copolymers, J.L. Mynar, A.P. Goodwin, J. A. Cohen, Y.-Z. Ma, G.R. Fleming, and J.M.J. Frechet, Chem. Commun. 2081-2082 (2007) Zeaxanthin Radical Cation Formation in Light Harvesting Complexes of Higher Plant Antennae, T.J. Avenson, T.K. Ahn, D. Zigmantas, R. Bassi, M. Ballottari, K.K. Niyogi, and G.R. Fleming, J. Biol. Chem. 283, 6, 35503558 (2008). Efficient Simulation of Three-Pulse Photon-Each Signals and the Application to Detect Electronic Coupling in a Bacterial Reaction Center, Y.-C. Cheng, H. Lee, and G.R. Fleming, J. Phys. Chem. A 111, 9499-9508 (2007) dx.doi.org/10.1021/jp2009594 |J. Phys. Chem. A 2011, 115, 3614–3629



384. Elucidation of Population and Coherence Dynamics Using Cross-Peaks in Two-Dimensional Electronic Spectroscopy, Y.-C. Cheng, G.S. Engel, and G.R. Fleming, Chem. Phys. 341, 285-295 (2007). 385. Coherence Quantum Beats in Two-Dimensional Electronic Spectroscopy, Y.-C. Cheng and G.R. Fleming, J. Phys. Chem. A 112, 4254-4260 (2008). 386. Visualization of Excitonic Structure in the Fenna-MatthewsOlson Photosynthetic Complex by Polarization-Dependent Two-Dimensional Electronic Spectroscopy, E.L. Read, G.S. Schlau-Cohen, G.S. Engel, J. Wen, R.E. Blankenship, and G.R. Fleming, Biophys. J. 95, 847-856 (2008) 387. Architecture of a Charge-Transfer State Regulating Light Harvesting in a Plant Antenna Protein, T.K. Ahn, T.J. Avenson, M. Ballottari, Y.-C. Cheng, K.K. Niyogi, R. Bassi, and G.R. Fleming, Science 320, 794-796 (2008). 388. Energy Transfer Dynamics in Light-Harvesting Assemblies Templated by the Tobacco Mosaic Virus Coat Protein, Y.-Z. Ma, R.A. Miller, G.R. Fleming, and M.B. Francis, J. Phys. Chem. B 112, 6887-6892 (2008). 389. Kinetic Modeling of Charge-Transfer Quenching in the CP29 Minor Complex, Y.C. Cheng, T.K. Ahn, T.J. Avenson, D. Zigmantas, K.K. Niyogi, M. Ballottari, R. Bassi, and G.R. Fleming, J. Phys. Chem. C 112, 1341813423 (2008). 390. Ultrafast Exciton Dephasing in Semiconducting SingleWalled Carbon Nanotubes Y.-Z. Ma, M.W. Graham, A. A. Green, M.C. Hersam, and G.R. Fleming, Phys. Rev. Lett. 101, 217402 (2008). 391. Femtosecond Photon Echo Spectroscopy of Semiconducting Single-Walled Carbon Nanotubes, M.W. Graham, Y.-Z. Ma, and G.R. Fleming, Nano Lett. 8, 3936-3941 (2008). 392. Investigating Energy Partitioning During Photosynthesis Using an Expanded Quantum Yield Convention, T.K. Ahn, T.J. Avenson, G. Peers, Z. Li, L. Dall’Osto, R. Bassi, K.K. Niyogi, and G.R. Fleming, Chem. Phys. (Villy Sundstr€om Issue) 357, 151-158 (2009). 393. Vibrational Spectra and Dynamics of Electronically Excited Semiconducting Single-Walled Carbon Nanotubes, Y.-Z. Ma, M.W. Graham, M.A. Prantil, A.J. Van Tassle, and G.R. Fleming, J. Phys. Chem. B (Karl Freed Festschrift) 112, 16030-16034 (2008). 394. Grand Challenges in Basic Energy Sciences; G.R. Fleming and M. A. Ratner, Phys. Today 60, 28-33 (2008). 395. Dynamics of Light Harvesting in Photosynthesis, Y.-C. Cheng and G.R. Fleming, Annu. Rev. Phys. Chem. 60, 241-262 (2009). 396. Lutein Can Act as a Switchable Charge Transfer Quencher in the CP26 Light Harvesting Comples, T.J. Avenson, T.K. Ahn, K.K. Niyogi, M. Ballottari, R. Bassi, and G.R. Fleming, J. Biol. Chem. 284, 2830-2835 (2009). 397. Pigment Organization and Energy Level Structure in LightHarvesting Complex 4: Insights from Two-Dimensional Electronic Spectroscopy, E.L. Read, G.S. Schlau-Cohen, G. S. Engel, T. Georgiou, M.Z. Papiz, and G.R. Fleming, J. Phys. Chem. B 113, 6495-6504 (2009). 398. Photon Echo Studies of Photosynthetic Light Harvesting, E.L. Read, H. Lee, and G.R. Fleming, Photosynth. Res. (Govindjee Special Issue) 101, 233 (2009). 399. On the Adequacy of the Redfield Equation, and Related Approaches to the Study of Quantum Dynamics in

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Electronic Energy Transfer, A. Ishizaki and G.R. Fleming, J. Chem. Phys. 130, 234110 (2009). Unified Treatment of Quantum Coherent and Incoherent Hopping Dynamics in Electronic Energy Transfer: Reduced Hierarchy Equations Approach, A. Ishizaki and G. Fleming, J. Chem. Phys. 130, 234111 (2009). Nonlinear Optical Methods to Study Condensed Phase Chemical and Biological Dynamics, G. R. Fleming, Lecture for European Virtual University on Lasers, published online at www.mitr.p.lodz.pl/evu/wyklady/ (Jan 2009). Two-Dimensional Electronic Spectroscopy of the LowLight Adapted Light Harvesting Complex 4, E. Read, G. S. Schlau-Cohen, G.S. Engel, T. Georgiou, M.Z. Papiz, G. R. Fleming, In Ultrafast Phenomena XVI, Proceedings of the 16th International Conference Series, Springer Series in Chemical Physics, Vol. 92, P. Corkum, S. De Silvestri, K.A. Nelson, E. Riedle, R.W. Schoenlein, Eds.; Springer, Berlin, Germany, pp 559-561 (2009). Mapping Parallel Pathways of Energy Flow in LCHII with Broadband, G.S. Schlau-Cohen, T.R. Calhoun, G.S. Engel, E. Read, N.S. Ginsberg, D. Zigmantas, R. Bassi, G.R. Fleming, In Ultrafast Phenomena XVI, Proceedings of the 16th International Conference Series, Springer Series in Chemical Physics, Vol. 92, P. Corkum, S. De Silvestri, K.A. Nelson, E. Riedle, R.W. Schoenlein, Eds.; Springer, Berlin, Germany, pp 598-600 (2009). Observation of Quantum Coherence in Light Harvesting Complex II by Two-Dimensional Electronic Spectroscopy, T.R. Calhoun, N.S. Ginsberg, Y.-C. Cheng, M. Ballottari, R. Bassi, G. R. Fleming, In Ultrafast Phenomena XVI, Proceedings of the 16th International Conference Series, Springer Series in Chemical Physics, Vol. 92, P. Corkum, S. De Silvestri, K.A. Nelson, E. Riedle, R.W. Schoenlein, Eds.; Springer, Berlin, Germany, pp 406408 (2009) Quantum Coherence Accelerating Photosynthetic Energy Transfer, H. Lee, Y.-C. Cheng, G. Fleming, In Ultrafast Phenomena XVI, Proceedings of the 16th International Conference Series, Springer Series in Chemical Physics, Vol. 92, P. Corkum, S. De Silvestri, K.A. Nelson, E. Riedle, R.W. Schoenlein, Eds.; Springer, Berlin, Germany, pp 607-609 (2009). Exciton Dephasing in Semiconducting Single-Walled Carbon Nanotubes, Y.-Z. Ma, M.W. Graham, G.R. Fleming, A.A. Green, S.I. Stupp, M.C. Hersam, G.R. Fleming, In Ultrafast Phenomena XVI, Proceedings of the 16th International Conference Series, Springer Series in Chemical Physics, Vol. 92, Corkum, P. Corkum, S. De Silvestri, K.A. Nelson, E. Riedle, R.W. Schoenlein, Eds.; Springer, Berlin, Germany, (2009). Lutein Accumulation in the Absence of Zeaxanthin Restores Nonphotochemical Quenching in the Arabidopsis thaliana npq1 Mutant, Z. Li, T.K. Ahn, T. J. Avenson, J.A. Cruz, D.M. Kramer, G.R. Fleming, Jay D. Keasling, and K.K. Niyogi, Plant Cell 21, 1798-1812 (2009). Two-Dimensional Electronic Spectroscopy of Molecular Aggregates, N. Ginsberg, Y.-C. Cheng, and G.R. Fleming, Acc. Chem. Res. 42, 1352-1363 (2009). Quantum Coherence Enabled Determination of the Energy Landscape in LHC II, T.R. Calhoun, N.S. Ginsberg, dx.doi.org/10.1021/jp2009594 |J. Phys. Chem. A 2011, 115, 3614–3629


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G.S. Schlau-Cohen, Y.-C. Cheng, M. Ballottari, R. Bassi, and G.R. Fleming, J. Phys. Chem. B 113, 16295-16295 (2009). Dephasing in Semiconducting Single-Walled Carbon Nanotubes Induced by Exciton-Exciton Annihilation, D. Abramavicius, Y.-Z. Ma, M.W. Graham, L. Valkunas, and G.R. Fleming, Phys. Rev. B 79, 195445 (2009). Ultrafast Mid-Infrared Intra-Excitonic Response of Individualized Single-Walled Carbon Nanotubes, J. Wang, M.W. Graham, Y.Z. Ma, G.R. Fleming, and R.A. Kaindl, CLEO Submitted. Theoretical Examination of Quantum Coherence in a Photosynthetic System at Physiological Temperature, A. Ishizaki, and G. R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 106, 17255-17260 (2009). Excited State Dynamics of 80 -apo-β-Caroten-80 -al, and 70 ,70 -Dicyano-70 -apo-β-caroten Studied by Femotosecond Time-Resolved Infrared Spectroscopy, Y. Pang, M.A. Prantil, A.J. Van Tassle, G.A. Jones, G.R. Fleming, J. Phys. Chem. B 113, 13086-13095 (2009). The Pathways of Energy Flow in LCHII from TwoDimensional Electronic Spectroscopy, G.S. Schlau-Cohen, T.R. Calhoun, N.S. Ginsberg, E.L. Read, M. Ballotarri, R. Bassi, R. Van Grondelle, G.R. Fleming, J. Phys. Chem. B 113, 15352-15363 (2009). Unusual Relaxation Pathway from the Two-Photon Excited First Singlet State of Cartotenoids, Y. Pang, G.A. Jones, M.A. Prantil, and G.R. Fleming, J. Am. Chem. Soc. 132, 2264-2273 (2010). Exciton Annihilation and Dephasing Dynamics in Semiconducting Single-Walled Carbon Nanotubes, M.W. Graham, Y.-Z. Ma, G.R. Fleming, A.A. Green, and M. C. Hersam, Ultrafast Phenomena in Semiconductors, and Nanostructure Materials, XIV Proceedings of SPIE, Vol. 7600, pp 76001F1-13 (2010). What Is the Solar Energy Conversion Efficiency of Natural Photosynthesis Compared to Photovoltaic Cells? Robert E. Blankenship, David M. Tiede, James Barber, Gary W. Brudvig, Graham Fleming, Maria Ghirardi, M.R. Gunner, Wolfgang Junge, David M. Kramer, Anastasios Melis, Thomas A. Moore, Christopher C. Moser, Daniel G. Nocera, Arthur J. Nozik, Donald R. Ort, William W. Parson, Roger C. Prince, Richard T. Sayre, Science Submitted. Branching Relaxation Pathways from the Hot S2 State of 80 Apo-beta-caroten-80 -al, Yoonsoo Pang and Graham Fleming, Phys. Chem. Chem. Phys. 25, 6782-6788 (2010). Quantum Coherence and Its Interplay with Protein Environments in Photosynthetic Electronic Energy Transfer, A. Ishizaki, T. Calhoun, G. Schlau-Cohen, and G. Fleming, Phys. Chem. Chem. Phys. 27, 7319-7337 (2010). Quantum Superposition in Photosynthetic Light Harvesting: Delocalization and Entanglement, A. Ishizaki, and G. Fleming, New J. Phys. 12, 055004 (2010). Spectroscopic Elucidation of Uncoupled Transition Energies in the Major Photosynthetic Light Harvesting Complex, LHCII, G. Schlau-Cohen, T. Calhoun, N. Ginsberg, M. Ballottari, R. Bassi, and G. Fleming, Proc. Natl. Acad. Sci. U.S.A. 107, 13276-13281, (2010). Quantum Entanglement in Photosynthetic Light Harvesting Complexes, M. Sarovar, A. Ishizaki, G. Fleming, and K.B. Whaley, Nat. Phys. 6, 462-467 (2010).

423. Ultrafast Mid-Infrared Intra-Excitonic Response of Individualized Single-Walled Carbon Nanotubes, J. Wang, M.W. Graham, Y.-Z. Ma, G.R. Fleming, and R. Kaindl, Phys. Rev. Lett. 104, 177401 (2010). 424. Analysis of LhcSR3, a Protein Essential for Feedback DeExcitation in the Green Alga Chlamydomonas reinhardtii, G. Bonente, M. Ballottari, T. Truong, T. Morosinotto, T. Ahn, G. Fleming, K. Niyogi, and R. Bassi, PloS Biol. 9, e1000577 (2010). 425. Solving Structure in the CP29 Light Harvesting Complex with Polarization Phased 2D Electronic Spectroscopy, N. Ginsberg, J. Davis, M. Ballottari, Y.-C. Cheng, R. Bassi, and G. Fleming, Proc. Natl. Acad. Sci. U.S.A. In Press. 426. Exciton Dynamics in Semiconducting Carbon Nanotubes, M. Graham, J. Chmeliov, Y.-Z. Ma, H. Shinoharum M. Hersam, A. Green, L. Valkunas, and G. Fleming, J. Phys. Chem. doi: 10.1021/jp106250a, (2011). 427. Pure Optical Dephasing in Semiconducting SingleWalled Carbon Nanotubes, M. Graham, Y.-Z. Ma, A. Green, M. Hersam, and G. Fleming, J. Chem. Phys. 134, 034504/1-034504/13 (2011). 428. Mimicking the Role of the Antenna in Photosynthetic Photoprotection, Y. Terazono, G. Kodis, K. Bhushan, J. Zaks, C. Madden, A. Moore, T. Moore, G. Fleming, and D. Gust, J. Am. Chem. Soc. 133 (9), 2916-2922 (2011). 429. Two-Dimensional Electronic Spectroscopy of Semiconducting Single-Walled Carbon Nanotubes, M.W. Graham, T. Calhoun, A. Green, M.C. Hersam, and G.R. Fleming, Ultrafast Phenomena XVII, Springer Series in Chemical Physics, In Press. 430. Mid-Infrared Intra-Excitonic Response of Separated SingleWalled Carbon Nanotubes, J. Wang, M.W. Graham, Y.-Z. Ma, G.R. Fleming, and R. Kaindl, Ultrafast Phenomena XVII, Springer Series in Chemical Physics, In Press. 431. Vibrationally-Mediated Dynamics in β-Carotene Probed with Broadband 2-D Electronic Spectroscopy, Tessa R. Calhoun, Jeffrey A. Davis, and Graham R. Fleming, Ultrafast Phenomena XVII, Springer Series in Chemical Physics, In Press. 432. Elucidation of Electronic Structure and Quantum Coherence in LHCII with Polarized 2-D Spectroscopy, Gabriela S. Schlau-Cohen, Tessa R. Calhoun, Naomi S. Ginsberg, Matteo Ballottari, Roberto Bassi, and Graham R. Fleming, Ultrafast Phenomena XVII, Springer Series in Chemical Physics, In Press. 433. Determining Chlorophyll Orientation in the CP29 Light Harvesting Complex with Arithmetic Polarized 2-D Electronic Spectroscopy, Naomi S. Ginsberg, Jeffrey A. Davis, Matteo Ballottari, Yuan-Chung Cheng, Roberto Bassi, and Graham R. Fleming, Ultrafast Phenomena XVII, Springer Series in Chemical Physics, in Press. 434. Quantum Coherence in Photosynthetic Complexes, Tessa Calhoun and Graham R. Fleming, Phys. Status Solidi DOI:10.1002/pssb.201000856 (2011). 435. Quantum Effects in Biology, Graham R. Fleming, Gregory D. Scholes, and Yuan-Chung Cheng, Proceedings of 22nd Solvay Conference on Chemistry, Elsevier Press, New York, In Press. 436. Ultrafast Multidimensional Spectroscopy: Principles, and Applications to Photosynthetic Systems, Gabriela Schlau-Cohen, Jahan M. Dawlaty, and Graham R. Fleming, IEEE J. Sel. Top. Quantum Electron. In Press. 3628




437. Iterative Path-Integral Algorithm versus Cumulant Time-Nonlocal Master Equation Approach for the Dissipative Biomolecular Exciton Transport, Peter Nalbach, Akihito Ishizaki, Graham Fleming, and Michael Thorwart, New J. Phys. Submitted. 438. Are Reduced Density Matrices Enough? On the Interpretation of Two-Dimensional Electronic Spectra of Photosynthetic Light Harvesting Complexes, Akihito Ishizaki and Graham R. Fleming, J. Phys. Chem. Submitted. 439. What Lies Ahead (Commentary), Graham R. Fleming, Nature 469, 25 (2011).

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Publications of Graham R. Fleming - The Journal of Physical

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