A Portable and Autonomous Mass Spectrometric System for On-Site

The apparatus is most suitable for on-site gas analysis during field work and at remote locations due to its small size (60 cm × 40 cm × 14 cm), low...
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A portable and autonomous mass spectrometric system for on-site environmental gas analysis Matthias S. Brennwald, Mark Schmidt, Julian Oser, and Rolf Kipfer Environ. Sci. Technol., Just Accepted Manuscript • DOI: 10.1021/acs.est.6b03669 • Publication Date (Web): 19 Nov 2016 Downloaded from http://pubs.acs.org on November 24, 2016

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A portable and autonomous mass spectrometric system for on-site environmental gas analysis Matthias S. Brennwald,∗,1 Mark Schmidt,2 Julian Oser,1 and Rolf Kipfer1 ,3 1 Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dep. Water Resources and Drinking Water, D¨ubendorf, Switzerland 2 GEOMAR Helmholtz Centre for Ocean Research Kiel, Wischhofstr. 1–3, 24148 Kiel, Germany 3 Institute for Geochemistry and Petrology, ETH Zurich, Switzerland E-mail: [email protected]

Revison of ES&T manuscript ES-2016-03669r November 7, 2016 Corresponding author phone: +41 58 765 53 05

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Abstract

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We developed a portable mass spectrometric system (“miniRuedi”) for quantificaton of

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the partial pressures of He, Ne (in dry gas), Ar, Kr, N2 , O2 , CO2 and CH4 in gaseous and

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aqueous matrices in environmental systems with an analytical uncertainty of 1–3 %. The

5

miniRuedi does not require any purification or other preparation of the sampled gases and

6

therefore allows maintenance-free and autonomous operation. The apparatus is most suit-

7

able for on-site gas analysis during field work and at remote locations due to its small size

8

(60 cm × 40 cm × 14 cm), low weight (13 kg), and low power consumption (50 W). The gases

9

are continuously sampled and transferred through a capillary pressure reduction system into

10

a vacuum chamber, where they are analysed using a quadrupole mass spectrometer with a

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time resolution of .1 min. The low gas consumption rate (< 0.1 ml/min) minimises interfer-

12

ence with the natural mass balance of gases in environmental systems, and allows the unbi-

13

ased quantification of dissolved-gas concentrations in water by gas/water equilibration using

14

membrane contractors (gas-equilibrium membrane-inlet mass spectrometry, GE-MIMS). The

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performance of the miniRuedi is demonstrated in laboratory and field tests, and its utility is

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illustrated in field applications related to soil-gas formation, lake/atmosphere gas exchange,

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and seafloor gas emanations.

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Introduction

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The abundances of gas species in environmental systems are controlled by numerous physical,

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chemical and biological processes and conditions. Gases are therefore highly useful proxies to

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study the dynamics of environmental processes and can be of great utility to study the interplay

22

of these processes. In particular, chemically inert gases (noble gases; He, Ne, Ar, Kr, Xe) were

23

successfully used to study and quantify physical transport and mixing of fluids as well as the

24

exchange between gas and water 1–27 or biofluids. 28,29 Such quantitative information on the physical

25

processes controlling the dynamics of gases in environmental systems is required to quantify and

26

interpret the turnover and the fate of biogeochemically active species (e.g., O2 , CO2 , CH4 , Nx Ox )

27

in terms of chemical and biological processes 5,21,30–35

28

The dynamics of gases and the associated processes in environmental systems are often not

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accessible from “snapshot data” obtained from single samples reflecting the conditions of a system

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at a unique point in time. In order to capture the complete evolution of the gas species of interest,

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data series with sufficiently high temporal and spatial resolution are required. Careful optimisa-

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tion of the sampling strategy in terms of sampling frequency and locations is therefore of utmost

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importance, but is often very challenging due to the lack of prior knowledge of the gas dynamics

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within a given system.

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The currently applied methods for environmental gas analyses are usually targeted at a single

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gas species or limited set of gases, and are often based on expensive and highly specialised instru-

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ments and techniques for sampling and subsequent laboratory based quantification. 36–42 Acquiring

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data sets comprising a sufficiently complete suite of both inert and active gas species at the re-

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quired spatial and temporal resolutions therefore poses numerous practical limitations related to

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field-work logistics, access to specialised laboratories and data turnaround time that often prevent

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acquisition of suitable data sets.

42

The way forward to overcome these technical and logistical limitations is to simultaneously

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analyse a sufficiently complete suite of inert and biogeochemically active gas species at the re-

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quired temporal and spatial resolution directly in the field. On-site and real-time availability of 4 ACS Paragon Plus Environment

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such data avoids the limitations involved with sampling, transport and analysis and would thus

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considerably improve the quality and utility of the recorded data during fieldwork. For this pur-

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pose, membrane-inlet mass-spectrometric (MIMS) systems 43,44 were developed with the aim to

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reduce their complexity and size. 42,45–48 However, these MIMS are targeted at limited sets of gas

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species dissolved in water samples only, and are not suitable for unattended long-term operation

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in the field, because their gas inlet system is designed for manual sample inlet or requires frequent

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maintenance of gas-purifying devices. In addition, these instruments rely on a gas-permeable mem-

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brane to separate the water sample at atmospheric pressure from the vacuum in the MS. The rates

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by which the gas species diffuse from the bulk water across the membrane and into the vacuum

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of the MS depend on temperature, water flow along the membrane surface, membrane ageing and

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fouling, etc. It is notoriously difficult to achieve tight control over these operational parameters and

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cumbersome to handle water standards with well-known dissolved gas concentrations during field-

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work. Reliable and accurate calibration and application of such MIMS instruments is therefore

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challenging.

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The recently developed gas-equilibrium MIMS (GE-MIMS) method 49–51 avoids some of the

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limitations of previous MIMS designs by establishing a solubility equilibrium between the sampled

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water and a gas phase separated by a gas-permeable membrane. The advantage of the GE-MIMS

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method is that the gas/water partitioning is hardly affected by the poorly constrained dynamics of

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the gas-transfer across the membrane, because the partitioning operates at solubility equilibrium.

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Reliable on-site calibration of such a gas/water equilibration system is therefore straight-forward,

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and ambient air can be conveniently used as a standard gas for calibration of the partial pressures

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of the noble gases, N2 , and O2 .

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For GE-MIMS analysis, a small fraction of the equilibrated gas phase is continuously trans-

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ferred through a pressure reducing system into the MS vacuum, where the gases are analysed.

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Recent GE-MIMS instruments for analysis of O2 /Ar ratios 50 or Ne/Ar, Ne/Kr, and Ne/Xe ratios 51

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in seawater used very low gas transfer rates (. 0.02 cm3STP /min, STP: standard temperature and

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pressure, T = 0 ◦ C, P = 1013.25 mbar) to avoid deviation from the gas/water equilibrium in the

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membrane contactor. In contrast, a modified atmospheric-pressure gas analyser targeted for GE-

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MIMS analysis of absolute He, Ar, Kr, N2 , O2 , CO2 , and CH4 concentrations (“Ruedi”) 49 operates

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at a much higher gas removal rate from the membrane contactor (2 cm3STP /min).

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gas depletion biases the partial pressures relative to the assumed gas/water equilibrium in the mem-

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brane contactor. While both approaches have illustrated the great potential of continuous analysis

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of selected gas species, 30,32,34,35,52,53 the remaining analytical limitations of these instruments (lim-

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ited sets of gas species, lack of absolute partial pressure analysis) and their bulkiness and high

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power consumption (several hundred watts) prevented widespread use in diverse environmental

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research applications in the field.

However, this

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Here we present a simple, compact, and portable mass spectrometric system with low sample

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gas consumption (“miniRuedi”). The miniRuedi expands considerably beyond the capabilities of

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currently available instruments and methods for environmental gas analysis. The system allows

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quasi-continuous and on-site analysis of the partial pressures of a wide range of environmental

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gas species at environmental concentrations (He, Ne (in dry gas), Ar, Kr, N2 , O2 , CO2 and CH4 )

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and is most suitable for absolute analysis of dissolved gas concentrations in aqueous matrices

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using the GE-MIMS method. The system does not rely on any gas purification or sample prepa-

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ration units, which makes it robust and maintenance-free and thus enables autonomous long-term

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operation in the field. The miniRuedi is built using off-the-shelf parts only. The instrument is

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portable (60 cm × 40 cm × 14 cm, 13 kg) and consumes only 50 W electrical power, which al-

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lows straight-forward deployment and operation at remote locations using batteries, solar panels

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or other off-grid electricity sources. Most importantly, the instrument consumes very little sample

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gas (0.06 cm3STP /min), which is required for unbiased GE-MIMS measurements of absolute partial

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pressures, and greatly reduces the interference of on-line gas analysis with the natural dynamics

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and mass balance of the gases in an environmental system.

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The utility of the miniRuedi for environmental research is demonstrated in three field-application

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examples related to soil-gas formation, lake/atmosphere gas exchange, and seafloor gas emana-

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tions.

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Experimental Section

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The setup of the miniRuedi system is illustrated in Figure 1. A parts list is given in Table 1.

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The computer controlled valve (S) is used to select the gas inflow from different gas sources at

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approximately atmospheric pressure. The capillary (C) controls the gas flow from the gas inlet

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into the vacuum system. The continuous gas flow from the capillary into the quadrupole mass

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spectrometer (QMS) is balanced by the turbomolecular pump (TP), which produces a high vacuum

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in the QMS. The gas species in the QMS are ionised in the open, cylindrically symmetrical ion

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source by electron impact ionisation (in this work, the ionisation energy was always set to 70 eV

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unless noted otherwise). The resulting ion beam then passes a quadrupole mass filter set to a

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specific m/z ratio (m: ion mass number, z: ion charge number), and the ion beam strength at

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this m/z value is quantified using either a Faraday cup (F) or a secondary electron multiplier (M)

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detector.

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Gas inlet system

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The sample gas pressure is reduced from approximately atmospheric pressure to the high vacuum

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in the QMS using a 10 m long capillary with an inner diameter of 0.1 mm. The rugged 1/16”

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stainless-steel capillary tubing prevents the leakage of He and other mobile gases through the

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tubing walls. We empirically determined the gas flow though this capillary to 0.06 cm3STP /min.

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This gas flow results in a total gas pressure of approximately 2 × 10−8 bar in the MS vacuum

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chamber, which yields maximum overall sensitivity of the MS while not exceeding the linear

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operation range of the MS. The observed travel time of the gas from the capillary inlet to the QMS

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is approximately 80 s. An instantaneous step-like concentration change at the capillary inlet is

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smeared out over approximately 10 s (50 % rise time) once it reaches the QMS, resulting in an

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analytical time resolution of .1 min.

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Compared to MS systems with a typical two-stage pressure reduction using a capillary fol-

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lowed by a pinhole/bypass system, the miniRuedi gas consumption is lower by several orders of

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magnitudes. The system is therefore most suitable for applications where low gas consumption is

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beneficial, such as the GE-MIMS technique. With a typical total gas concentration in air-saturated

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water of approximately 25 cm3STP /L, a water flow rate of & 0.1 L/min through the membrane con-

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tactor would provide more than 100× the gas amount consumed by the miniRuedi. This illustrates

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how the miniRuedi allows unbiased GE-MIMS analysis at low water flow rates. Furthermore, pin-

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hole/bypass stages or similar flow bifurcations may introduce uncontrollable fractionation of gas

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species in vacuum systems. Such artefacts are avoided in the miniRuedi by the absence of such a

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secondary pressure reduction stage.

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Data processing and calibration

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The peak heights in the m/z spectrum are recorded in a user-defined sequence of the relevant

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m/z values using the F and M detectors, and repeated readings are averaged over a time interval

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suitable for a given application. The means (sm/z ) of the peak heights recorded during each interval

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at each m/z ratio are used as the raw measurement results of each measurement step. The sm/z

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values obtained from sample or standard-gas analyses are corrected for the instrument blank by

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subtracting the sm/z values obtained with the inlet valve V closed.

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The blank-corrected sm/z values are calibrated in terms of the partial pressures of the different

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gas species in the sampled gas by peak height comparison relative to a reference gas with well

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known partial pressures of the species of interest. The mixing ratios of the different gas species in

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the gas are unaffected by the gas passage through the capillary, because the viscous flow regime

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prevailing throughout most of the capillary prevents fractionation of the gas species. For a given

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total gas pressure at the capillary inlet, the peak height at a given m/z value is therefore linearly

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related to the partial pressure of the respective gas species in the sampled gas. Note, however, that

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the capillary gas flow approaches the molecular flow regime at the outlet to the QMS vacuum. The

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rate of the total gas flow through capillary is therefore not a perfectly linear function of the total gas

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pressure at the capillary inlet. 54 We found this nonlinearity to be negligible for the quantification

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of the partial pressures (bias < 1%) if the pressure difference between the sample gas and the 8 ACS Paragon Plus Environment

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reference gas at the capillary inlet is . 50 mbar. For larger pressure differences, accurate partial

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pressures are obtained by normalising their sum to correspond to the true sample gas pressure at

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the capillary inlet.

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In many environmental applications, ambient air can be used as a well-defined and convenient

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gas standard for noble gases, N2 and O2 . A dedicated standard-gas mixture is only required for

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species with unknown or variable atmospheric partial pressures, or if the sampled partial pressures

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are vastly different from those in air, for example in systems with high abundances of CO2 , CH4 or

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(non-atmospheric) He.

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In order to account for drifts in the instrument sensitivity resulting from changes in the flow

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resistance of the gas inlet or the sensitivity of the mass spectrometer, the standard gas is analysed

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periodically in between sample gas analyses. The sm/z values obtained in a given sample-gas

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analysis step are then calibrated using the sm/z values of the standard-gas analysis steps interpolated

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to the analysis time of the sample gas step. Finally, the standard error of the sample gas analyses

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is estimated from the standard deviation of replicate analysis results obtained from standard gases.

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Results and Discussion

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Laboratory tests

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To test the linearity of the sm/z values in response to variations in the partial pressures of the

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gas species at the capillary inlet, we prepared a gas mixture with mixing ratios of approximately

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7.0% He, 0.24% CH4 , 16% O2 , 72% N2 , 1.8% Ar, and 3.1% CO2 . This test gas was kept in a

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gas sampling bag (Linde, Plastigas) and was incrementally diluted with 99.999% pure N2 . The

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dilution factor was determined by quantifying the CO2 and CH4 mixing ratios of the dilution using

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a cavity ring-down spectroscopy analyser (Picarro G2201-i). Figure 2 shows the peak heights

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obtained from analyses of each test gas dilution step, whereby the total pressure of the gas mixture

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and its dilutions in the sample bag was always kept at ambient pressure (960 hPa). This dilution

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test confirms that the F and M peak heights at a given m/z value are linear functions of the partial 9 ACS Paragon Plus Environment

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pressure of the respective gas species at the capillary inlet.

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To assess the drift of the F and M sensitivity over time, the instrument was set to continuously

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analyse an air sample during 70 h in a laboratory with stable ambient temperature. Figure 3 shows

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the Allan deviations 55 of the resulting F and M signals. The Allan deviations reflect the errors of

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the means of the F and M signals as a function of the averaging time. Both the F and M Allan

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deviations exhibit a minimum at an averaging time of approximately 1 h. For shorter averaging

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times, the uncertainties of the F and M signal means are dominated by random noise, whereas

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for longer averaging times the uncertainties of the means are dominated by instrument drift. To

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minimise the effects of drift on the measurement results, peak-height readings should therefore

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not be averaged for longer than 1 h, and drift calibrations should be run at least hourly. However,

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changes in ambient temperature will affect the sensitivity of the instrument, mainly because the

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flow resistance of the capillary decreases with increasing temperature. Averaging time and drift

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calibration intervals therefore need to be adapted to changes in the ambient conditions. In addition,

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the choice of the averaging time and the drift calibration intervals will also need to be adapted to

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the time resolution of the measurement results required to assess the gas dynamics of the system

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being studied.

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The Allan deviation corresponds to the resolving power of the measurement and hence indi-

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cates the analytical precisions and the limits of detection 55 that can be achieved with the F and M

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detectors at any given m/z value. The minima of the relative Allan deviations for He (M, m/z = 4),

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Ne (M, m/z = 20), N2 (F, m/z = 28), O2 (F, m/z = 32), Ar (M, m/z = 36; F, m/z = 40), and

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Kr (M, m/z = 84) all correspond to 0.3–0.6% of the respective partial pressure in the atmosphere.

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The typical limits of detection are therefore estimated to approximately 1% of the partial pressure

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of the respective gases in the atmosphere.

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The absence of any gas purification stage requires special attention to avoid matrix effects

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related to ions of different gas species that contribute to the same signal at a given m/z ratio, e.g.,

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due to multiple ionisation of gas species or isobaric gas molecules. 56 Multiple ionisation can be

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reduced substantially by reducing the electron impact energy in the ioniser unit in the QMS. 57

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O2+ 2 ions) and at m/z = 20

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In particular, the interferences occurring at m/z = 16 (12 CH+4 and

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(20 Ne and 40 Ar

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Figure 4-A shows the F peak heights obtained from analysis of pure Ar at m/z = 40 (40 Ar ) and

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m/z = 20 (40 Ar ) as a function of the electron energy. For electron energies below 50 eV, the

2+

+

16

ions) may be of special relevance for the targeted applications of the miniRuedi. +

2+

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40

2+

+

Ar /40 Ar ratio is less than 3 · 10−5 , which is approximately two orders of magnitude lower

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than the 20 Ne/40 Ar ratio in air (1.77·10−3 ). Using electron energies of 50 eV or less will therefore

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reduce the 40 Ar

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20

2+

interference to a level where it can easily be compensated or even neglected for

Ne analysis in air-like gases (Figure 4-B). However, we observed that

20

(H2 O) molecules may

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contribute up to ∼50 % to the m/z = 20 signal in moist air-like gas matrices (such as in GE-MIMS

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analyses).

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compensation of the residual 20(H2 O) contribution, which may be estimated from the the m/z = 18

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signal and by assuming a typical 20(H2 O)/ 18(H2 O) ratio. Apart from these interferences, we did not

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observe any significant interferences that would affect the gas analysis on the m/z values shown in

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Figure 2. Nevertheless, it is important to note that such interferences may become relevant in gas

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matrices that are very different from the air-like gas assessed in this work.

20

Ne quantification is therefore recommended in dry gases only and requires careful

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To test the miniRuedi performance as a GE-MIMS with miniature membrane contactors at low

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water flow, we compared GE-MIMS measurements using miniature membrane contactors (Liqui-

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Cel G591, 11 cm3 external volume) with measurements using the large membrane contactor as used

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with our original GE-MIMS 49 (Liqui-Cel G542, 260 cm3 external volume). The miniature contac-

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tors were operated either as a single unit or as a parallel combination of two units. Groundwater

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was pumped through the membrane contactors, and tee branches were used to split the water flow

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among the membrane contactors for parallel operation of the miniature and the large contactors.

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The flow rates were 0.4 L/min through each miniature contactor and 2 L/min through the large

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contactor. 10 measurements were made with each miniature contactor setup (single or two parallel

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contactors). Each miniature-contactor measurement was bracketed with a measurement using the

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large contactor. Figure 5 shows that using a single miniature contactor may result in a small bias

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of the gas partial pressures relative to those observed in the large contactor. For the tested gas

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species shown in Figure 5, the bias is largest for CO2 (approximately 8%), but much smaller for

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the remaining gases (He, Ar, Kr, N2 ). However, using two miniature contactors removes the bias

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for all gases. The low gas consumption of the miniRuedi therefore obviates the compensation for

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gas depletion in the membrane contactor and allows absolute GE-MIMS measurements with much

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smaller membrane contactors and water flows than the previous GE-MIMS instrument 49 , which

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requires a water flow of ≥ 2 L/min.

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Field test (accuracy and precision)

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To quantify the accuracy and precision of the miniRuedi with the GE-MIMS method, we carried

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out a series of 42 GE-MIMS measurements (using a Liqui-Cel G542 contactor) of the 4He, N2 , 40Ar

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and

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inert atmospheric gases in the creek are in equilibrium with their atmospheric partial pressure and

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therefore serve as a well defined reference for comparison with the measured concentrations. In

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addition, 29 air replicates were analysed to determine the precision of the miniRuedi measurements

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without the GE-MIMS contactor. Air standards for drift calibration were carried out in between the

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sample analyses. For each measurement, the peak heights at mz = 4, 28, 40 and 84 were integrated

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for 10 min.

84

Kr concentrations in a small creek (Chriesbach, Switzerland). The concentrations of these

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The residuals ri = (Cm,i − Ce,i )/Ce,i of the measured concentrations in the water (Cm,i , i =

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1 . . . 42) relative to the atmospheric equilibrium concentrations (Ce,i ) were computed from the sol-

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ubility of the respective gas at the water temperature that prevailed at the time of the corresponding

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measurement (13.4 ◦ C to 15.7 ◦ C). The means of the ri (µ in Table 2) indicate that the accuracy

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of the miniRuedi analysis with the GE-MIMS method was 0.9 % or better for all gases. The stan-

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dard deviations of the ri (σ) indicate that the overall precision of the miniRuedi analysis with the

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GE-MIMS method ranged from 1.2 % to 3.3 %. The standard deviations of the air replicates anal-

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ysed without the GE-MIMS contactor (σair ) are only marginally smaller. The loss of precision

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associated with the addition the GE-MIMS contactor to the miniRuedi is therefore small.

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Application examples

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In the three application examples below, we demonstrate the utility of the miniRuedi for the anal-

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ysis of the gas dynamics in different environmental systems and field settings. The examples were

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chosen to cover both gaseous and aqueous matrices and to span a wide range of processes and rates

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controlling the natural gas dynamics.

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Soil gas formation

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Figure 6 shows the concentrations of Ar, N2 , O2 , CO2 , and CH4 determined with the miniRuedi

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in the soil gas of a bioreactor landfill located in north-eastern Switzerland. The landfill is being

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prepared for active aerobisation by technical means in order to foster aerobic decomposition of the

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mostly organic wastes to CO2 in favour of anaerobic decomposition to the more potent greenhouse

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gas CH4 . To this end, the landfill has been sealed at the top. The ongoing production of landfill

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gases therefore results in a steady gas outflow from the 5 observation wells, where the gases were

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sampled in gas-tight 500 mL stainless-steel flasks. We connected the flasks to the miniRuedi gas

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inlet to determine the concentrations of the various gas species in these samples . The concen-

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trations of Ar, N2 , and O2 were calibrated using ambient air, whereas gas mixtures of 10% CO2

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in N2 and 10% CH4 in N2 were used for CO2 and CH4 calibration. As expected, the observed O2

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concentrations are low in all 5 observation wells (0.5–2 %). The concentrations of the remaining

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gases indicate a binary mixture of landfill gas (CO2 , CH4 ) and oxygen-depleted air (N2 , Ar). The

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Ar concentration yields a direct quantification of the relative proportions of these two endmembers

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and hence allows quantification of the air-derived O2 that has been transformed within the landfill.

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In addition, the N2 /Ar ratio is elevated in one well by approximately 30% relative to the atmo-

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spheric ratio, which points to N2 production by denitrification. Such combined analyses of inert

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and active gas species are therefore highly beneficial to quantify the turnover of O2 and other gases

277

and thus allows assessing the efficiency of landfill aerobisation.

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Lake/atmosphere gas exchange

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Figure 7 shows the partial pressures of Ar, N2 , O2 , CO2 , and CH4 in a floating chamber deployed

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on the water surface of Lake Soppensee (central Switzerland). Such floating chambers are used to

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isolate a section of the water surface (0.126 m2 ) from the atmosphere in order to study CO2 and CH4

282

fluxes across the water surface using a CO2 / CH4 analyser. 58 The mass balance of the gas species

283

in the chamber is controlled by the gas exchange across the isolated section of the water surface.

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We connected the gas inlet of the miniRuedi to the floating chamber and recorded the change in the

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partial pressures in the headspace after deployment on the lake during 12 min. The volume of the

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gas transferred into the miniRuedi gas inlet during this period corresponds to less than 0.05h of

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the floating chamber volume (19.1 L). The effect of the gas consumption of the miniRuedi on the

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mass balance of the gas species in the floating chamber is therefore negligible. After deployment

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of the floating chamber, the CH4 and CO2 partial pressures showed a marked increase relative

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to the atmospheric background, because the surface water of the hypertrophic lake was strongly

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supersaturated with these gases. In contrast, the surface water was undersaturated in O2 relative

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to the atmospheric equilibrium (30% saturation) due to aerobic respiration and possibly also CH4

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oxidation, rapid cooling of the surface water, and mixing with O2 -depleted deep water. Despite

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the large atmospheric O2 background of the initial air trapped in the floating chamber, the decrease

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of the O2 partial pressure due to O2 transfer to the water is small, but quantifiable. In contrast,

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the Ar and N2 concentrations in the water were closer to saturation (both at 75% saturation), and

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no systematic changes in the Ar and N2 partial pressures in the float chamber are observed. The

298

miniRuedi thus allows expanding the float chamber method for quantification of CO2 and CH4

299

fluxes to Ar, N2 , O2 , and possibly also other gas species. In particular, the gas consumed for

300

miniRuedi analysis does not interfere with the mass balance of the gas species in the floating

301

chamber. The miniRuedi might thus provide new insights into the rates and physical processes

302

controlling gas/water exchange, such as enhanced air/water exchange mediated by microbubbles

303

present in the water body. 58

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304

Seafloor gas emanation

305

Figure 8 shows the concentrations of He, CO2 , and CH4 observed in deep-water samples taken

306

in the Gulf of California (Mexico). These gases are associated with hydrothermal fluids released

307

from black smokers or other fluid vents at the seafloor. 59 At each sampling location, replicate deep-

308

water samples were collected in 10 L Niskin samplers. Immediately after retrieval of the Niskin

309

samplers, one replicate was screened for the dissolved-gas concentrations with the miniRuedi using

310

the GE-MIMS method. To allow GE-MIMS analysis with such a limited amount of water, two

311

parallel miniature membrane contactors (Liqui-Cel G591) were used with a total water flow of

312

0.5 L/min from the Niskin samplers. The small gas volume of the miniature membrane contactors

313

facilitates fast gas/water equilibration within approximately 3 min after starting the water flow.

314

Therefore, more than 15 min were left for GE-MIMS analysis of the water flowing from the Niskin

315

samplers. The dissolved-gas concentrations obtained from the GE-MIMS screening were used

316

to optimise the the selection of subsamples from the remaining Niskin samplers for after-cruise

317

laboratory-based analyses of 3 He/4 He and δ13 C of the fluids emitted from the black smokers. 59 The

318

new possibility for rapid on-board GE-MIMS screening of relatively small sample volumes (10 L)

319

proved to be highly beneficial for identifying target samples for post-cruise analyses in specialised

320

labs. In addition, data turnaround time was reduced and the quality of the 3 He/4 He and δ13 C data

321

set used for detailed characterisation of the hydrothermal fluids was optimised.

322

Assessment

323

Our laboratory tests and field applications demonstrate the performance and flexibility of the

324

miniRuedi for on-site gas analysis in a wide range of environmental systems and applications.

325

The miniRuedi provides real-time partial pressure measurements of He, Ne (in dry gas), Ar, Kr,

326

N2 , O2 , CO2 and CH4 both in gaseous and aqueous matrices. The low gas consumption opens

327

up new possibilities for unbiased GE-MIMS quantification of dissolved gas concentrations at low

328

water flow, gas analysis in flux chambers, and other systems with low gas throughput where sample

329

gas consumption must be minimised to avoid interference with the natural gas dynamics. In con15 ACS Paragon Plus Environment

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330

trast to earlier systems aimed at environmental gas analysis, the miniRuedi is highly suitable for

331

on-site gas analysis in various environmental systems and at remote locations due to its portability,

332

low power requirements, and maintenance-free operation. The on-site data availability and the

333

high temporal resolution of time-series data are crucial benefits over conventional methods based

334

on expensive and often laborious laboratory analyses of single samples. The miniRuedi therefore

335

opens new opportunities for the combined analysis of inert (He, Ne, Ar, Kr, N2 ) and reactive gases

336

(O2 , CO2 , CH4 , etc.), which provides the basis for quantitative studies of environmental processes

337

and their interplay in terms of physical, chemical, and biological mechanisms.

338

Acknowledgement

339

We thank Philipp Weber for support with the lab tests and Anja Bretzler for editing assistance.

340

Further, we thank the four anonymous reviewers for their constructive comments.

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References (1) Cook, P., Herczeg, A., Eds. Environmental Tracers in Subsurface Hydrology; Kluwer Academic Publishers: Boston, Dordrecht, London, 2000. (2) Kipfer, R.; Aeschbach-Hertig, W.; Peeters, F.; Stute, M. In Noble gases in geochemistry and cosmochemistry; Porcelli, D., Ballentine, C., Wieler, R., Eds.; Rev. Mineral. Geochem.; Mineralogical Society of America, Geochemical Society, 2002; Vol. 47; pp 615–700. (3) Aeschbach-Hertig, W.; Solomon, D. In The Noble Gases as Geochemical Tracers; Burnard, P., Ed.; Advances in Isotope Geochemistry; Springer: Heidelberg, New York, Dordrecht, London, 2013; pp 81–122. (4) Brennwald, M. S.; Vogel, N.; Scheidegger, Y.; Tomonaga, Y.; Livingstone, D. M.; Kipfer, R. In The Noble Gases as Geochemical Tracers; Burnard, P. G., Ed.; Advances in Isotope Geochemistry; Springer, 2013; pp 123–153. (5) Stanley, R. H. R.; Jenkins, W. J. In The Noble Gases as Geochemical Tracers; Burnard, P., Ed.; Advances in Isotope Geochemistry; Springer, 2013; pp 55–79. (6) Aeschbach-Hertig, W.; Peeters, F.; Beyerle, U.; Kipfer, R. Interpretation of dissolved atmospheric noble gases in natural waters. Water Resour. Res. 1999, 35, 2779–2792. (7) Beyerle, U.; Aeschbach-Hertig, W.; Hofer, M.; Imboden, D. M.; Baur, H.; Kipfer, R. Infiltration of river water to a shallow aquifer investigated with 3 H/3 He, noble gases and CFCs. J. Hydrol. 1999, 220, 169–185. (8) Aeschbach-Hertig, W.; Peeters, F.; Beyerle, U.; Kipfer, R. Palaeotemperature reconstruction from noble gases in ground water taking into account equilibration with entrapped air. Nature 2000, 405, 1040–1044. (9) Hohmann, R.; Schlosser, P.; Jacobs, S.; Ludin, A.; Weppernig, R. Excess helium and neon in the southeast Pacific: Tracers for glacial meltwater. J. Geophys. Res.–Oceans 2002, 107, 3198. (10) Thomas, J. M.; Hudson, G. B.; Stute, M.; Clark, J. F. Noble gas loss may indicate groundwater flow across flow barriers in southern Nevada. Env. Geol. 2003, 43, 568–579. (11) Brennwald, M. S.; Imboden, D. M.; Kipfer, R. Release of gas bubbles from lake sediment traced by noble gas isotopes in the sediment pore water. Earth Planet. Sci. Lett. 2005, 235, 31–44. (12) Huber, C.; Beyerle, U.; Leuenberger, M.; Schwander, J.; Kipfer, R.; Spahni, R.; Severinghaus, J. P.; Weiler, K. Evidence for molecular size dependent gas fractionation in firn air derived from noble gases, oxygen, and nitrogen measurements. Earth Planet. Sci. Lett. 2006, 243, 61–73. (13) Severinghaus, J. P.; Battle, M. Fractionation of gases in polar ice during bubble close-off: new constraints from firn air Ne, Kr, and Xe observations. Earth Planet. Sci. Lett. 2006, 244, 474–500. 17 ACS Paragon Plus Environment

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(14) Klump, S.; Kipfer, R.; Cirpka, O. A.; Harvey, C. F.; Brennwald, M. S.; Ashfaque, K. N.; Badruzzaman, A. B. M.; Hug, S. J.; Imboden, D. M. Groundwater Dynamics and Arsenic Mobilization in Bangladesh Assessed using Noble Gases and Tritium. Environ. Sci. Technol. 2006, 40, 243–250. (15) Klump, S.; Tomonaga, Y.; Kienzler, P.; Kinzelbach, W.; Baumann, T.; Imboden, D.; Kipfer, R. Field experiments yield new insights into gas exchange and excess air formation in natural porous media. Geochim. Cosmochim. Acta 2007, 71, 1385–1397. (16) Cey, B. D.; Hudson, G. B.; Moran, J. E.; Scanlon, B. R. Impact of Artificial Recharge on Dissolved Noble Gases in Groundwater in California. Environ. Sci. Technol. 2008, 42, 1017– 1023, PMID: 18351066. (17) Klump, S.; Cirpka, O.; Surbeck, H.; Kipfer, R. Experimental and numerical studies on excessair formation in quasi-saturated porous media. Water Resour. Res. 2008, 44, W05402. (18) Holzner, C. P.; McGinnis, D. F.; Schubert, C. J.; Kipfer, R.; Imboden, D. M. Noble gas anomalies related to high-intensity methane gas seeps in the Black Sea. Earth Planet. Sci. Lett. 2008, 265, 396–409. (19) Althaus, R.; Klump, S.; Onnis, A.; Kipfer, R.; Purtschert, R.; Stauffer, F.; Kinzelbach, W. Noble gas tracers for characterisation of flow dynamics and origin of groundwater: A case study in Switzerland. J. Hydrol. 2009, 370, 64–72. (20) Chaduteau, C.; Jean-Baptiste, P.; Fourr´e, E.; Charlou, J.-L.; Donval, J.-P. Helium transport in sediment pore fluids of the Congo-Angola margin. Geochem. Geophys. Geosyst. 2009, 10, Q01002. (21) Pitre, F.; Pinti, D. L. Noble gas enrichments in porewater of estuarine sediments and their effect on the estimation of net denitrification rates. Geochim. Cosmochim. Acta 2010, 74, 531–539. (22) Severinghaus, J. P.; Albert, M. R.; Courville, Z. R.; Fahnestock, M. A.; Kawamura, K.; Montzka, S. A.; M¨uhle, J.; Scambos, T. A.; Shields, E.; Shuman, C. A.; Suwa, M.; Tans, P.; Weiss, R. F. Deep air convection in the firn at a zero-accumulation site, central Antarctica. Earth Planet. Sci. Lett. 2010, 293, 359–367. (23) Hall, C. M.; Castro, M. C.; Lohmann, K. C.; Sun, T. Testing the noble gas paleothermometer with a yearlong study of groundwater noble gases in an instrumented monitoring well. Water Resour. Res. 2012, 48, W04517. (24) Grundl, T.; Magnusson, N.; Brennwald, M. S.; Kipfer, R. Mechanisms of subglacial groundwater recharge as derived from noble gas, 14 C, and stable isotopic data. Earth Planet. Sci. Lett. 2013, 369-370, 78–85. (25) Loose, B.; Jenkins, W. J. The five stable noble gases are sensitive unambiguous tracers of glacial meltwater. Geophys. Res. Lett. 2014, 41, 2835–2841.

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(26) Tomonaga, Y.; Brennwald, M. S.; Meydan, A. F.; Kipfer, R. Noble gases in the sediments of Lake Van – Solute transport and palaeoenvironmental reconstruction. Quaternary Sci. Rev. 2014, 104, 117–126. (27) Tomonaga, Y.; Brennwald, M. S.; Kipfer, R. Attenuation of diffusive noble-gas transport in laminated sediments of the Stockholm Archipelago. Limnol. Oceanogr. 2015, 60, 497–511. (28) Tomonaga, Y.; Brennwald, M. S.; Livingstone, D. M.; Tomonaga, G.; Kipfer, R. Determination of Natural In Vivo Noble-Gas Concentrations in Human Blood. PLOS ONE 2014, 9, e96972. (29) Thevis, M.; Piper, T.; Geyer, H.; Thomas, A.; Schaefer, M. S.; Kienbaum, P.; Sch¨anzer, W. Measuring xenon in human plasma and blood by gas chromatography/mass spectrometry. Rapid Comm. Mass Spectrometry 2014, 28, 1501–1506. (30) Stanley, R. H. R.; Kirkpatrick, J. B.; Cassar, N.; Barnett, B. A.; Bender, M. L. Net community production and gross primary production rates in the western equatorial Pacific. Global Biogeochem. Cycles 2010, 24, GB4001. (31) Freundt, F.; Schneider, T.; Aeschbach-Hertig, W. Response of noble gas partial pressures in soil air to oxygen depletion. Chem. Geol. 2013, 339, 283–290. (32) M¨achler, L.; Brennwald, M. S.; Kipfer, R. Argon Concentration Time-Series As a Tool to Study Gas Dynamics in the Hyporheic Zone. Environ. Sci. Technol. 2013, 47, 7060–7066. (33) M¨achler, L.; Peter, S.; Brennwald, M. S.; Kipfer, R. Excess air formation as a mechanism for delivering oxygen to groundwater. Water Resour. Res. 2013, 49, 1–10. (34) Eveleth, R.; Timmermans, M.-L.; Cassar, N. Physical and biological controls on oxygen saturation variability in the upper Arctic Ocean. J. Geophys. Res.–Oceans 2014, 119, 7420– 7432. (35) Peter, S.; M¨achler, L.; Kipfer, R.; Wehrli, B.; Durisch-Kaiser, E. Flood-Controlled ExcessAir Formation Favors Aearobic Respiraton and Limits Denitrification Activity in Riparian Groundwater. Frontiers Env. Sci. 2015, 3. (36) Hofer, M.; Imboden, D. M. Simultaneous determination of CFC-11, CFC-12, N2 and Ar in water. Anal. Chem. 1998, 70, 724–729. (37) Beyerle, U.; Aeschbach-Hertig, W.; Imboden, D. M.; Baur, H.; Graf, T.; Kipfer, R. A mass spectrometric system for the analysis of noble gases and tritium from water samples. Environ. Sci. Technol. 2000, 34, 2042–2050. (38) Kulongoski, J. T.; Hilton, D. R. A quadrupole-based mass spectrometric system for the determination of noble gas abundances in fluids. Geochem. Geophys. Geosyst. 2002, 3, 1–10. (39) Stanley, R. H. R.; Baschek, B.; Lott III, D. E.; Jenkins, W. J. A new automated method for measuring noble gases and their isotopic ratios in water samples. Geochem. Geophys. Geosyst. 2009, 10, Q05008. 19 ACS Paragon Plus Environment

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(40) S¨ultenfuss, J.; Roether, W.; Rhein, M. The Bremen mass spectrometric facility for the measurement of helium isotopes, neon, and tritium in water. Isotopes In Environmental and Health Studies 2009, 45, 83–95. (41) Brennwald, M. S.; Hofer, M.; Kipfer, R. Simultaneous analysis of noble gases, sulphur hexafluoride and other dissolved gases in water. Environ. Sci. Technol. 2013, 47, 8599–8608. (42) Visser, A.; Singleton, M. J.; Hillegonds, D. J.; Velsko, C. A.; Moran, J. E.; Esser, B. K. A membrane inlet mass spectrometry system for noble gases at natural abundances in gas and water samples. Rapid Communications in Mass Spectrometry 2013, 27, 2472–2482. (43) Kotiaho, T. On-site Environmental and In Situ Process Analysis by Mass Spectrometry. Journal of Mass Spectrometry 1996, 31, 1–15. (44) Ketola, R. A. In Environmental Instrumentation and Analysis Handbook; Randy D. Down P E, R. D., Lehr, J. H., Eds.; Wiley, 2005; pp 187–220. (45) Schl¨uter, M.; Gentz, T. Application of Membrane Inlet Mass Spectrometry for Online and In Situ Analysis of Methane in Aquatic Environments. J. Am. Soc. Mass Spectromet. 2008, 19, 1395–1402. (46) Gentz, T.; Schl¨uter, M. Underwater cryotrap-membrane inlet system (CT-MIS) for improved in situ analysis of gases. Limnol. Oceanogr. Methods 2012, 10, 317–238. (47) Sommer, S.; Schmidt, M.; Linke, P. Continuous inline tracking of dissolved methane plume at a blowout site in the Northern North Sea UK – water column stratification impedes immediate methane release into the atmosphere. Marine and Petroleum Geology 2015, 68, 766–775. (48) Schmidt, M.; Linke, P.; Sommer, S.; Esser, D.; Cherednichenko, S. Natural CO2 seeps offshore Panarea – A test site for subsea CO2 leak detection technology. Marine Technology Society Journal 2015, 49, 19–30. (49) M¨achler, L.; Brennwald, M. S.; Kipfer, R. Membrane Inlet Mass Spectrometer for the QuasiContinuous On-Site Analysis of Dissolved Gases in Groundwater. Environ. Sci. Technol. 2012, 46, 8288–8296. (50) Cassar, N.; Barnett, B.; Bender, M. L.; Kaiser, J.; Hamme, R. C.; Tilbrook, B. Continuous High-Frequency Dissolved O2 /Ar Measurements by Equilibrator Inlet Mass Spectrometry. Anal. Chem. 2009, 81, 1855–1864. (51) Manning, C. C.; Stanley, R. H. R.; Lott III, D. E. Continuous Measurements of Dissolved Ne, Ar, Kr, and Xe Ratios with a Field-Deployable Gas Equilibration Mass Spectrometer. Anal. Chem. 2016, 88, 3040–3048. (52) M¨achler, L. Quantification of oxygen turnover in groundwater by continuous on-site gas concentration measurements. Ph.D. thesis, ETH Z¨urich, 2012. (53) M¨achler, L.; Brennwald, M. S.; Tyroller, L.; Livingstone, D. M.; Kipfer, R. Conquering the Outdoors with On-Site Mass Spectrometry. Chimia 2014, 68, 155–159. 20 ACS Paragon Plus Environment

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(54) Fryer, G. M. A theory of gas flow through capillary tubes. Proc. Royal Soc. London, Ser. A Math. Phys. Sci. 1966, 293, 329–341. (55) Werle, P.; M¨ucke, R.; Slemr, F. The Limits of Signal Averaging in Atmospheric Trace-Gas Monitoring by Tunable Diode-Laser Absorption Spectroscopy (TDLAS). Appl. Phys. B 1993, 131–139. (56) Burnard, P.; Zimmermann, L.; Sano, Y. In The Noble Gases as Geochemical Tracers; Burnard, P., Ed.; Advances in Isotope Geochemistry; Springer, 2013; pp 1–15. (57) Davies, S.; Rees, J. A.; Seymour, D. L. Threshold ionisation mass spectrometry (TIMS); a complementary quantitative technique to conventional mass resolved mass spectrometry. Vacuum 2014, 101, 416–422. (58) McGinnis, D. F.; Kirillin, G.; W, T. K.; Flury, S.; Bodmer, P.; Engelhardt, C.; Casper, P.; Grossart, H.-P. Enhancing Surface Methane Fluxes from an Oligotrophic Lake: Exploring the Microbubble Hypothesis. Environ. Sci. Technol. 2015, 49, 873–880. (59) Berndt, C. et al. Rifting under steam – how rift magmatism triggers methane venting from sedimentary basins. Geology 2016, G38049.1.

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Tables Table 1: Parts list (see also Figure 1).

Part

Description

S C V QMS

6-port inlet selector valve (VICI C5-2306EMHY) 10 m stainless steel tubing with 0.1 mm inner diameter (VICI TSS104) Inlet valve (Swagelok SS-4H) Quadrupole mass spectrometer with Faraday cup and secondary electron multiplier detectors (Stanford Research Systems RGA-200) TP Turbomolecular pump with 70 L/s pumping speed (Pfeiffer HiPace 80) DP Diaphragm pump for < 20 mbar forevacuum (KNF N 813.4 ANDC-B) Power supply 24 VDC power supply (max. 5 A during turn on) for S, QMS, TP, and DP, for instance 2×12 V ‘car batteries’ or mains voltage converter (e.g., Mean Well SP-240-24)

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Table 2: Field test results for accuracy and precision of the miniRuedi analysis and the GE-MIMS method (see text). Means (µ) and standard deviations (σ) of the residuals of the observed concentrations relative to the atmospheric equilibrium concentrations, and standard deviations of replicate air analysis results (σair ). Species µ (%) σ (%) σair (%) 4

He N2 40 Ar 84 Kr

-0.5 -0.3 0.8 0.9

2.5 1.2 2.3 3.3

1.9 0.9 1.1 3.2

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Figures

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Computer

S

1 2 3 4 5 6

C

V

QMS

TP

DP

Gas flow

60 cm V C S

40 cm

QMS

DP

TP

Figure 1: Schematic overview (top) and photo (bottom) of the miniRuedi mass-spectrometer system (see also Table 1): 6-port inlet selector valve (S), capillary (C), inlet valve (V), quadrupole mass spectrometer (QMS), turbomolecular pump (TP), diaphragm pump (DP). The inlet selector valve and the quadrupole mass spectrometer are controlled by a computer. The photo shows the miniRuedi mounted in a wheeled hardshell suitcase for transport and protection.

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Detector signal sm/z (A)

10-7 4

10-8

, M) /z=4

m He (

M) 15,

m/z=

( CH 4

-9

sm/z = const. × _

10

) 8, F /z=2

* N 2 (m

10-10

F) 32,

m/z=

O2 (

10-11

F) 44,

m/z=

( CO 2 40

10-12

4

) 0, F /z=4 F) =4, (m/z

Ar (m He

dilution

10-13 1%

100% 10% Fraction _ of original test gas

Figure 2: Peak heights sm/z obtained with F and M detectors from a test gas mixture (at ambient pressure) that was incrementally diluted with pure N2 to reduce the partial pressures of the various gas species (see text). The dilution is quantified as the fraction α of the original test gas remaining in the dilution. The m/z = 28 peak heights corresponding to the N2 of the test gas (denoted by an asterisk, N2 * ) was arithmetically corrected for the contribution of the N2 added for dilution. The dots show the peak heights at the respective m/z values (mean values of three replicate analyses). Error bars reflecting the standard deviations of the replicate measurements are covered by the plot symbols, except for N2 * error bars, which reflect the uncertainty of the dilution correction. The best-fit lines are of the form sm/z = const. × α, with r2 > 99.5% for all fits.

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3%

F (O2, m/z = 32)

mA

1%

0.3% M (He, m/z = 4) 0.1% 10

2

10

3

10

4

o (s)

Figure 3: Relative Allan deviations σA as a function of the averaging time τ of the F and M signal readings obtained from the analysis of an air sample (see text). The instrument was operated in a laboratory with ambient temperature stabilised to ±1◦ C.

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F signal (A)

Environmental Science & Technology

10

-7

10

-8

10

-9

10

-10 m/z = 40 (F)

10-11 10

-12

10

-13

10

-14

10 F and M signals (A)

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m/z = 20 (F)

A (pure Ar)

-9

10-10 10

-11

10

-12

10

-13

10

-14

10

-15

m/z = 40 (F)

m/z = 20 (M) (divided by 1000)

B (air) 20

30

40

50

60

70

80

90

100 110

Ionizing electron energy (eV)

Figure 4: Peak heights at m/z = 20 and m/z = 40 as a function of the ionising electron energy. A: analysis of pure Ar (99.999%) using the F detector. B: analysis of air, where peak heights at m/z = 20 were analysed using the M detector and divided by 1000 to compensate for the higher sensitivity of the M detector relative to the F detector.

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He bias (%)

10 5 0 -5 -10

Ar bias (%)

10 5 0 -5 -10

Kr bias (%)

10 5 0 -5 -10

N2 bias (%)

10 5 0 -5 -10

CO2 bias (%)

10

Single MicroModule Double MicroModule

5

MiniModule (reference)

0 -5 -10 1

2

3

4 5 6 7 Measurement number

8

9

10

Figure 5: Bias in partial pressures obtained from GE-MIMS measurements in groundwater using miniature membrane contactors (Liqui-Cel MicroModule, type 0.5 × 1 / G591) relative to partial pressures in larger membrane contactors as required for the original GE-MIMS instrument 49 (Liqui-Cel MiniModule, type 1.7 × 5.5 / G542). The miniature contactors were operated either as a single unit or as a parallel combination of two units. Groundwater was pumped through the membrane contactors, and tee branches were used to split the water flow among the membrane contactors for parallel operation of the MicroModules and the MiniModule. The error bars reflect the variability of the gas concentrations in the groundwater flow and the noise in the MS detector signals during each measurement.

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80 N2

X i (%)

60 40

CH4

CO2

20

O2

0 A 0.2

B 0.4

C

D

0.6 X Ar (%)

E 0.8

Figure 6: Soil gas composition in a covered landfill: volumetric concentrations of Ar vs. concentrations of i = N2 , O2 , CO2 , CH4 in the five observations wells A–E. Replicate samples were taken in wells A, B and C. Error bars reflecting the standard errors of the measurements are covered by the plot symbols.

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25 CO2 20

6pi (%)

15

CH4

10 5

40

Ar

N2

0 -5

free air

isolated from atmosphere

0

O2

2 4 6 8 10 Time after isolation (min)

12

Figure 7: Gas exchange at the water surface of Lake Soppensee: changes of the partial pressures of Ar, N2 , O2 , CO2 , and CH4 in an air volume above the water surface, before and after isolating the air volume from the atmosphere (∆pi , change relative to initial partial pressures in free air).

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10-6

10-1

s er k o

10-2

ck la

Sm

10-7

B

10-8

10-3

CH4 (cm3STP / g)

CO2 (cm3STP / g)

CH4 CO2

Background

3×10-8

10-7

3×10-7

10-6

He (cm3STP / g) Figure 8: Screening seawater samples for hydrothermal fluids released from black smokers in the Gulf of California: 59 He, CO2 , and CH4 concentrations in water samples taken at water depths of up to 2 km (note the logarithmic axis scales).

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