Combinatorial Nano−Bio Interfaces Pingqiang Cai,† Xiaoqian Zhang,† Ming Wang,† Yun-Long Wu,‡ and Xiaodong Chen*,† †
Innovative Centre for Flexible Devices (iFLEX), School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, 639798 Singapore ‡ Fujian Provincial Key Laboratory of Innovative Drug Target Research and State Key Laboratory of Cellular Stress Biology, School of Pharmaceutical Sciences, Xiamen University, Xiamen 361102, P. R. China ABSTRACT: Nano−bio interfaces are emerging from the convergence of engineered nanomaterials and biological entities. Despite rapid growth, clinical translation of biomedical nanomaterials is heavily compromised by the lack of comprehensive understanding of biophysicochemical interactions at nano−bio interfaces. In the past decade, a few investigations have adopted a combinatorial approach toward decoding nano−bio interfaces. Combinatorial nano−bio interfaces comprise the design of nanocombinatorial libraries and high-throughput bioevaluation. In this Perspective, we address challenges in combinatorial nano−bio interfaces and call for multiparametric nanocombinatorics (composition, morphology, mechanics, surface chemistry), multiscale bioevaluation (biomolecules, organelles, cells, tissues/organs), and the recruitment of computational modeling and artificial intelligence. Leveraging combinatorial nano−bio interfaces will shed light on precision nanomedicine and its potential applications.
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complex interdependency of the physiochemical parameters of nanomaterials. For instance, Li et al. investigated the effects of nanoparticle (NP) surface charges on their cellular uptake.4 These introduced discrepancies in surface functionalization and protein absorption, however, could also affect the NPs’ biological fate.5 In addition, different fabrication and analysis techniques (e.g., dynamic light scattering, Brunauer−Emmett−Teller surface area, transmission electron microscopy) are not intrinsically comparable.3 The biological effects of identical nanosystem formulations can also vary greatly when exposed to different in vitro (patho-)physiological models and diverse in vivo organs or hosts. These pitfalls in current research methodologies could call into question the generalities asserted by many studies of nano−bio interfaces and hinder clinical translations of bench achievements. In addition, multiple cycles of optimization are usually needed to improve the performance of designed nano− bio interfaces, making it a time-intensive process with limited diversity and a high reliance on prior knowledge.
ano−bio interfaces, emerging at the convergence of nanotechnology and biomedicine, have been extensively programmed and implemented in biomedical applications such as nanodiagnosis, nanotherapy, and regenerative nanomedicine.1 Recent advances in nano−bio interfaces have further promised various functional biointegrated systems, including wearable and implantable nanobioelectronics and smart bionic prosthetics. Despite this rapid development, the bench-to-bedside translation of biomedical nanomaterials remains challenging. In the case of targeted nanoparticles (TNPs) for drug delivery, for example, only 0.7% (median) of the administered dose accumulates in the targeted solid tumor.2 These difficulties in translation stem from our limited understanding of biophysicochemical interactions at nano−bio interfaces and the lack of comprehensive and standardized screening of comparable biomedical nanomaterials and their physicochemical interactions with biological systems. These shortcomings could lead to conflicting conclusions, even on similar or identical nanomedicine formulations.3 In addition, many current studies on nano−bio interfaces are single-parametric, rendering the conclusions drawn less predictive in other scenarios. Different physicochemical parameters of the nanomaterials alone could exert significant effects on their fates and biological performance, including affecting the nanomaterials’ shapes, sizes, chemical compositions, crystal structures, surface charges, surface functionalizations, hydrophilicity, rigidity, and topographies. These parameters are interdependent, and the interrelated effects define a narrow yet sophisticated window for the optimization of nanomaterials to be interfaced with biological entities. Variation in one physicochemical parameter could inevitably introduce discrepancies in other parameters, which further increases the © XXXX American Chemical Society
THE FIRST-DECADE JOURNEY OF COMBINATORIAL NANO−BIO INTERFACES In the past decade, researchers have turned to combinatorial methodologies to revisit nano−bio interfaces by developing both nanocombinatorial libraries and high-throughput screening of those libraries. The combinatorial methodology has been employed to investigate correlations between physicochemical properties of nanomaterials and their biological performance and other potential applications, which we describe here as
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scoring multiple biological screenings of the library, including protein binding, cytotoxicity, and immune responses, through which one acylator was identified as the preferred ligand for reducing protein-binding and enhancing biocompatibility of f-MWCNTs. Subsequently, this nanocombinatorial library also identified formulations that steered MWCNTs from mannose receptor to scavenger receptor recognition, with correspondingly alleviated NFκB activation and reduced immunotoxicity.6 Furthermore, this nanocombinatorial library of f-MWCNTs was able to tune the magnitude of autophagy induction through the differentially activated signaling pathways, which could be employed for developing potential pharmaceutical autophagy modulators and biocompatible nanomaterials.7 These studies are elegant examples of combinatorial synthesis and nanotoxicity screening for potential nanomedicine applications. A thorough and combinatorial strategy to investigate relationships between nanomaterial surface functionalization and their nanotoxicity and bioactivity will enable researchers to identify nanomaterials with reduced nanotoxicity and optimized biological performance. Targeted drug delivery and TNPs have been spotlighted for decades due to their promising capability to minimize toxicity, bypassing immune clearance and particle extravasation, while achieving tissue penetration and specific cellular uptake.8 However, one challenge that frustrates the clinical translation of TNPs is defining optimal physicochemical parameters that can simultaneously confer molecular targeting, NP trafficking, and controlled drug release. Although a considerable amount of information is available regarding individual factors that improve the biological fate of TNPs, a key obstacle in the development of clinically effective TNPs is resolving the complex interdependence between their physicochemical properties (composition, morphology, surface properties, mechanics, etc.) and physiological trafficking (the sequential presentation of diverse biological barriers). In 2005, Weissleder et al. developed a library composed of 146 NPs decorated with various small molecules to identify specific binding affinities through mediated multivalent binding to cell-surface receptors.9 After screening against distinct cell lines or different physiological states of one cell type, derivative NPs with high specificity to endothelial cells or pancreatic cancer cells and those capable of macrophage activation were identified. Years later, Hrkach et al. developed preclinically effective targeted polymeric NPs, encapsulating chemotherapeutic docetaxel (DTXL) for the treatment of prostate tumors.10 To investigate the optimization of TNPs for efficient drug delivery and release, the researchers developed a combinatorial library of over 100 formulations varying systematically with respect to NP size, surface hydrophilicity, targeting ligand density, drug load, and drug release properties. The in vitro and in vivo performance of these formulations was evaluated, including their pharmacokinetics, biodistribution, tolerability, efficacy of drug release, and tumor accumulation, through which the optimized DTXL−TNP was finally identified. The promising utilization of NPs as nonviral vehicles for delivering genetic materials (e.g., siRNA, pDNA) might suffer from relatively low transfection efficiencies. Wang et al. created a nanocombinatorial library of 648 supramolecular NPs through the ratiometric combination of five molecular building blocks, with a broad diversity in NP size, surface functionalizations, and DNA loading capacities.11 The five building blocks were chosen to confer DNA complexation, water solubility, structural stability, protective passivation, and cell-specificity. Validation of the nanocombinatorial library in a collection of fibroblast and cancer cell lines revealed a highly efficient gene-delivery
Researchers have turned to combinatorial methodologies to revisit nano− bio interfaces by developing both nanocombinatorial libraries and high-throughput screening of those libraries. combinatorial nano−bio interfaces (Figure 1). The concept consists of two elementary yet multifactorial elements, namely,
Figure 1. Concept of combinatorial nano−bio interfaces emerging at the convergence of nanocombinatorics and high-throughput bioevaluation.
the nanocombinatorial library and the bioevaluation. The nanocombinatorial library of nanomaterials can be achieved by programming diverse physicochemical parameters, including morphology, composition, surface properties, and mechanics. The biophysicochemical interactions and biological performance of the library can induce biological responses at multiple levels, ranging from biomolecular (e.g., protein absorption, complex disassembly, enzyme inhibition) and subcellular level (e.g., membrane disruption, functional loss of organelles) to cellular (e.g., division, differentiation, migration, death) and tissue level responses (e.g., inflammation, fibrosis, carcinogenesis). Numerous permutations of nano−bio interactions are possible at the interface of nanocombinatorics and bioevaluation. In another sense, the combinatorial nano−bio interface depicts the complex crosstalk of nanomaterial intrinsic and emerging properties, where the biophysicochemical interactions of nanomaterials with bioentities can be regarded as their emerging properties and the physicochemical parameters of nanomaterials are their intrinsic properties. With the introduction of nanomaterials into biological entities, nanotoxicity and bioactivity of engineered nanomaterials have been raised as major concerns related to nanomaterials’ functionality. Surface functionalization is one of the most accessible parameters for tuning the nanotoxicity and biocompatibility of nanomaterials. Mu et al. developed a nanocombinatorial library that consists of 80 surface-functionalized multiwalled carbon nanotubes (f-MWCNTs) created through the combination of pre-selected amines and acylators.5 This library was validated by B
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libraries consist of limited or even single variables (e.g., surface functionalization7,15,17), which unfortunately compromises the predictive power of combinatorial methodology. A multiparametric nanocombinatorial library would offer improved versatility toward programming interactions at nano− bio interfaces for precision nanomedicine. Given the complex
formulation, with superior performance compared to commercial reagents. Similarly, Siegwart et al. constructed a nanocombinatorial library of 1536 chemically diverse core−shell NPs to elucidate the optimal parameters for intracellular delivery of siRNA and accordingly revealed beneficial design elements such as thin hydrophilic shells, a higher reactive block weight fraction, and stoichiometric equivalence between epoxides and amines.12 In addition to delivering genetic molecules, combinatorial probes based on nanostructured microelectrodes have also been developed as high-throughput electrochemical sensors to detect mutations of circulating tumor nucleic acids (e.g., epidermal growth factor receptor [EFGR] gene). Das et al. found that the combinatorial approach could accurately detect mutant sequences, and they were able to analyze all 40 clinically relevant mutations of the EFGR gene directly in patient serum.13 Furthermore, the field of tissue engineering has been programming the physicochemical properties of nanomaterials and, therefore, biophysicochemical interactions at the interface to modulate tissue physiology. Topography has been recognized since the 1990s as a potent regulator. Giam et al. generated a combinatorial library with a tuneable gradient of feature sizes over customized patterns, ranging from nano- to microscale, using polymer pen lithography.14 By tilting the polymer pen arrays, the researchers wrote gridded fibronectin patterns with varying feature sizes and spacings and investigated the differential expression of osteogenic markers in the mesenchymal stem cells cultured on these fibronectin patterns. Given the potential of printing multiplexed biomolecules, it would be beneficial to establish combinatorial libraries with further variations in substrate compositions. In 2015, Liu et al. used computational modeling to take advantage of the big data sets offered by nanocombinatorial libraries to further improve the efficiency of optimal nanomaterial identification and predictive power of combinatorial nano− bio interfaces.15 On the basis of a synthetic nanocombinatorial library containing 47 surface-functionalized gold NPs (f-GNPs), the researchers generated robust quantitative structure−property relationship (QSPR) models to investigate the enzyme−GNP interactions. Experimental screening and computational modeling using a proof-of-concept enzyme, acetylcholinesterase, revealed the molecular basis for specific/nonspecific enzyme binding and inhibition. Despite the high performance of the QSPR models in predicting protein−NP interactions, the library diversity is limited. The lack of suitable descriptors for various physicochemical properties of nanomaterials (e.g., size, shape, rigidity) and the corresponding biological effects (e.g., cellular uptake) can compromise the applicability of QSPR models. To overcome this limitation, Wang et al. developed alternative quantitative nanostructure activity relationship (QNAR) models.16 They synthesized a nanocombinatorial library of f-GNPs with diversity in surface functionalizations and NP sizes and then experimentally evaluated their cellular uptake. The authors then used the acquired data sets to construct a virtual GNP library and to derive corresponding nanodescriptors through precise simulation and, finally, to develop the predictive QNAR models. Given the improved diversity and predictivity, these GNPs can be experimentally validated and used as guidelines for nanomaterials design.16
A multiparametric nanocombinatorial library would offer improved versatility toward programming interactions at nano−bio interfaces for precision nanomedicine. interdependent multiparametric nature of nanocombinatorics, an extensive combination of these physicochemical properties is necessary to optimize nano−bio interfaces and to deliver clinically effective biomedical nanomaterials (Figure 3). For example, although surface decoration of targeting ligands is efficient in promoting specific cellular uptake, physical parameters (e.g., size, shape, rigidity) can also bias the cellular uptake of nanomaterials. Depending on the size of the NPs, cells can internalize the NPs by different pathways, such as caveolin-dependent and clathrinmediated endocytosis, receptor-mediated endocytosis, or simple translocation for smaller NPs. The shapes, aspect ratios, and docking orientations of nanomaterials have been reported to influence dynamic cell membrane wrapping and, thereby, the endocytosis process. In addition, positively charged nanomaterials are found to be more readily internalized than neutral or negatively charged nanomaterials,18 although higher toxicities could be incurred.4 Moreover, stiff nanomaterials (e.g., metallic and semiconductor NPs) are relatively more accessible to cellular endocytosis than are soft nanomaterials (e.g., liposome, micelles, polymeric NPs) due to the differential cell membrane deformation and energy distribution. Current advances in combinatorial nano−bio interfaces are confined within the domains of nanotoxicity, targeted delivery of therapeutics and genetic material, and tissue engineering. The advantageous combinatorial methodology should be extended to other domains as well, such as the emerging field of nanobioelectronics. The past decade has witnessed a rapid increase in flexible and stretchable nanobioelectronic devices, owing to nanotechnological strategies for introducing flexibility and stretchability to match the robust mechanical properties of biological tissues, such as softness, curvilinear topography, and dynamic stretch.19 There is an immediate demand to implement the combinatorial methodology in flexible nanobioelectronics; however, researchers have not yet utilized the combinatorial methodology in this manner. To establish a rational combinatorial library for flexible nanobioelectronics, several physicochemical properties need to be optimized, including elastic rigidity, stretchability and flexibility, sensitivity and stability, surface modification and biocompatibility, adhesion (e.g., between devices and tissues, between the functional modules and supporting modules), and integration of multifunctionality.20 A systematic understanding of flexible and stretchable nanobioelectronics in a combinatorial approach will reciprocally contribute to the translation of conceptual smart health care and novel electroceuticals into clinical products.
FURTHER EXTENSIONS OF MULTIPARAMETRIC NANOCOMBINATORIAL LIBRARIES The first decade of exploring combinatorial nano−bio interfaces has demonstrated the advantage of the combinatorial methodology over the conventional “one-at-a-time” experimental practice (Figure 2). However, many current nanocombinatorial
MULTISCALE BIOEVALUATION TOWARD CLINICAL TRANSLATION Nanomaterials interact with biological systems at multiple scales, ranging from molecules (proteins, DNA, cytoskeletons, etc.) to C
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Figure 2. First-decade journey of exploring combinatorial nano−bio interfaces. Image a reprinted with permission from ref 9. Copyright 2005 Macmillan Publishers Limited. Image b reprinted with permission from ref 17. Copyright 2008 American Chemical Society. Image c reprinted with permission from ref 11. Copyright 2010 American Chemical Society. Image d reprinted with permission from ref 12. Copyright 2011 National Academy of Sciences. Image e reprinted with permission from ref 6. Copyright 2011 American Chemical Society. Image f reprinted with permission from ref 14. Copyright 2012 National Academy of Sciences. Image g reprinted with permission from ref 10. Copyright 2012 AAAS. Image h reprinted with permission from ref 7. Copyright 2014 American Chemical Society. Image i reprinted with permission from ref 15. Copyright 2015 Tsinghua University Press. Image j reprinted with permission from ref 16. Copyright 2017 American Chemical Society. Image k reprinted with permission from ref 13. Copyright 2018 Wiley-VCH.
subcellular organelles (membranes, mitochondria, nuclei, etc.) to single cells, tissues, and organs. Current studies on biological responses to nanomaterials, including those adopting the combinatorial methodology, have focused on a few or even one selected aspect of the biological responses (e.g., cellular uptake9 and protein binding15). Such limited bioevaluation could prohibitively influence the translation of promising nanomedicine formulations. For instance, drug-delivery efficiencies and therapeutic effects might vary significantly among cell types, cancer types, and tumor models, as well in mouse and human tests.2 By contrast, less comprehensive screening may fail to shed light on multifaceted nano−bio interactions. For instance, although NP uptake showed little effect on the growth of primary tumor cells, NPs might significantly retard the cells’ collective migration.21 This discrepancy could arise from the differentially complex microenvironments of diverse bioentities and unclear physiochemical interactions at multiscale nano−bio interfaces. Hence, a multiscale bioevaluation of incurred biological responses is necessary to obtain a full picture of nanomaterials’ biological fates and performance (Figure 3). Robust biophysicochemical interactions at the nano−bio interface not only determine
the biological fates of the nanomaterials but also cause a wide range of biological responses, including protein absorption, cytoskeleton disassembly, membrane disruption, functional loss, cell migration, cell division, cell differentiation, cell death, wound healing, tissue fibrosis, inflammation, etc. At the bioevaluation stage, a comprehensive evaluation of the nanomaterials’ biological performance should be conducted in a biocombinatorial (multiscale) way, including investigating the disassembly or adsorption of biomolecules, the disruption or functional loss of cellular organelles, basic cell physiology such as division, morphogenesis, migration, differentiation, and death, and tissue-level responses. Bioresponses should also be assessed on demand for specific scenarios (e.g., the induction of apoptosis for cancer therapeutics, the activation of immune responses for implantable nanobioelectronic devices, cell membrane disruption and genotoxicity for gene therapeutics, microbe elimination efficiency for infection management22). A systematic evaluation and optimization of nanomaterials at multiple scales can offer a full picture of their biological fates and performance, therefore improving the predictive power of the suggested optimizations for specific biomedical applications. D
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Figure 3. Pending challenges for future advances in combinatorial nano−bio interfaces, including the integration of multiparametric nanocombinatorics, high-throughput multiscale bioevaluation, and computational simulation and artificial intelligence.
RECRUITMENT OF COMPUTATIONAL SIMULATION AND ARTIFICIAL INTELLIGENCE Although multiparametric nanocombinatorics and multiscale screenings will be in demand in the next decade, the space size of nano−bio interfaces is so immense that physical experimental practice alone is challenging for the design and identification of optimal nano−bio interfaces. The space size could reach 10100 when counting possible compositional combinations and be inaccessibly huge when considering the diversity in other physicochemical properties as well.23 There is an urgent demand for the development of appropriate models to link physicochemically diverse nanomaterials and complex biological responses with appropriate descriptors to identify relationships between biological systems and the physicochemical properties of NPs, especially since the launch of the Materials Genome Initiative.16,24−26 Computational simulations of nanomaterials for biomedical applications can efficiently boost the design and optimization of biomedical nanomaterials (Figure 3). The emergence of
the microscopic or macroscopic properties of nanomaterials, such as quantitative structure−activity relationships15 and quantitative nanostructure−activity relationships.16 An advantage of these approaches is that they can precisely simulate molecular structures in accordance with existing physical and chemical theories. However, such simulations might suffer from large computing burdens and require extensive prior knowledge, which may not be suitable for predictions of big data sets and end points with complex mechanisms. Recent advances in artificial intelligence and machine learning have endowed computers with the ability to learn from empirical material data and find hidden patterns without being explicitly programmed. These advances offer an alternative solution for predicting nanomaterial properties with improved time efficiency and prediction accuracy. Various machine learning algorithms, such as regression, decision trees, clustering, artificial neural networks, and evolutionary algorithms, can be explored in nanomaterials studies. For instance, random forest regression is favorable for data mining and knowledge extraction from prior data sets to understand the intercorrelations between physicochemical properties of biomedical nanomaterials and their corresponding influences in biological performance.27 In evolutionary algorithms (also called genetic algorithms), nanomaterials are mathematically represented as genomes and a population of promising candidates is generated by altering (mutating) the initial population (random or prior knowledge); these algorithms can be employed for rapid, rational design and evaluation of potentially useful nano−bio interfaces.23 Artificial neural networks (ANNs) have discrete layers, interconnections, and directions of data propagation. The weighted interconnections of an ANN can be trained through a learning process for predicting properties of nanomaterials (e.g., grain size28). Recently, deep learning has been widely used in image recognition,
Computational simulations of nanomaterials for biomedical applications can efficiently boost the design and optimization of biomedical nanomaterials. combinatorial nano−bio interfaces may enable computational modeling to delineate the physicochemical properties of nanomaterials and complex nano−bio interactions and, thus, to derive robust nanocombinatorial models with systematically diverse properties. In computational simulations, molecular dynamics and density functional theory are commonly employed to explore E
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(2) Wilhelm, S.; Tavares, A. J.; Dai, Q.; Ohta, S.; Audet, J.; Dvorak, H. F.; Chan, W. C. W. Analysis of Nanoparticle Delivery to Tumours. Nat. Rev. Mater. 2016, 1, 16014. (3) Azhdarzadeh, M.; Saei, A. A.; Sharifi, S.; Hajipour, M. J.; Alkilany, A. M.; Sharifzadeh, M.; Ramazani, F.; Laurent, S.; Mashaghi, A.; Mahmoudi, M. Nanotoxicology: Advances and Pitfalls in Research Methodology. Nanomedicine 2015, 10, 2931−2952. (4) Li, R.; Wang, X.; Ji, Z.; Sun, B.; Zhang, H.; Chang, C. H.; Lin, S.; Meng, H.; Liao, Y. P.; Wang, M.; Li, Z.; Hwang, A. A.; Song, T. B.; Xu, R.; Yang, Y.; Zink, J. I.; Nel, A. E.; Xia, T. Surface Charge and Cellular Processing of Covalently Functionalized Multiwall Carbon Nanotubes Determine Pulmonary Toxicity. ACS Nano 2013, 7, 2352−2368. (5) Mu, Q. X.; Liu, W.; Xing, Y. H.; Zhou, H. Y.; Li, Z. W.; Zhang, Y.; Ji, L. H.; Wang, F.; Si, Z. K.; Zhang, B.; Yan, B. Protein Binding by Functionalized Multiwalled Carbon Nanotubes Is Governed by the Surface Chemistry of Both Parties and the Nanotube Diameter. J. Phys. Chem. C 2008, 112, 3300−3307. (6) Gao, N.; Zhang, Q.; Mu, Q.; Bai, Y.; Li, L.; Zhou, H.; Butch, E. R.; Powell, T. B.; Snyder, S. E.; Jiang, G.; Yan, B. Steering Carbon Nanotubes to Scavenger Receptor Recognition by Nanotube Surface Chemistry Modification Partially Alleviates Nfκb Activation and Reduces Its Immunotoxicity. ACS Nano 2011, 5, 4581−4591. (7) Wu, L.; Zhang, Y.; Zhang, C.; Cui, X.; Zhai, S.; Liu, Y.; Li, C.; Zhu, H.; Qu, G.; Jiang, G.; Yan, B. Tuning Cell Autophagy by Diversifying Carbon Nanotube Surface Chemistry. ACS Nano 2014, 8, 2087−2099. (8) Farokhzad, O. C.; Langer, R. Impact of Nanotechnology on Drug Delivery. ACS Nano 2009, 3, 16−20. (9) Weissleder, R.; Kelly, K.; Sun, E. Y.; Shtatland, T.; Josephson, L. Cell-Specific Targeting of Nanoparticles by Multivalent Attachment of Small Molecules. Nat. Biotechnol. 2005, 23, 1418−1423. (10) Hrkach, J.; Von Hoff, D.; Ali, M. M.; Andrianova, E.; Auer, J.; Campbell, T.; De Witt, D.; Figa, M.; Figueiredo, M.; Horhota, A.; Low, S.; McDonnell, K.; Peeke, E.; Retnarajan, B.; Sabnis, A.; Schnipper, E.; Song, J. J.; Song, Y. H.; Summa, J.; Tompsett, D.; et al. Preclinical Development and Clinical Translation of a Psma-Targeted Docetaxel Nanoparticle with a Differentiated Pharmacological Profile. Sci. Transl. Med. 2012, 4, 128ra39. (11) Wang, H.; Liu, K.; Chen, K. J.; Lu, Y.; Wang, S.; Lin, W. Y.; Guo, F.; Kamei, K.; Chen, Y. C.; Ohashi, M.; Wang, M.; Garcia, M. A.; Zhao, X. Z.; Shen, C. K.; Tseng, H. R. A Rapid Pathway toward a Superb Gene Delivery System: Programming Structural and Functional Diversity into a Supramolecular Nanoparticle Library. ACS Nano 2010, 4, 6235−6243. (12) Siegwart, D. J.; Whitehead, K. A.; Nuhn, L.; Sahay, G.; Cheng, H.; Jiang, S.; Ma, M.; Lytton-Jean, A.; Vegas, A.; Fenton, P.; Levins, C. G.; Love, K. T.; Lee, H.; Cortez, C.; Collins, S. P.; Li, Y. F.; Jang, J.; Querbes, W.; Zurenko, C.; Novobrantseva, T.; et al. Combinatorial Synthesis of Chemically Diverse Core−Shell Nanoparticles for Intracellular Delivery. Proc. Natl. Acad. Sci. U. S. A. 2011, 108, 12996−13001. (13) Das, J.; Ivanov, I.; Safaei, T. S.; Sargent, E. H.; Kelley, S. O. Combinatorial Probes for High-Throughput Electrochemical Analysis of Circulating Nucleic Acids in Clinical Samples. Angew. Chem., Int. Ed. 2018, 57, 3711−3716. (14) Giam, L. R.; Massich, M. D.; Hao, L.; Shin Wong, L.; Mader, C. C.; Mirkin, C. A. Scanning Probe-Enabled Nanocombinatorics Define the Relationship between Fibronectin Feature Size and Stem Cell Fate. Proc. Natl. Acad. Sci. U. S. A. 2012, 109, 4377−4382. (15) Liu, Y.; Winkler, D. A.; Epa, V. C.; Zhang, B.; Yan, B. Probing Enzyme-Nanoparticle Interactions Using Combinatorial Gold Nanoparticle Libraries. Nano Res. 2015, 8, 1293−1308. (16) Wang, W.; Sedykh, A.; Sun, H.; Zhao, L.; Russo, D. P.; Zhou, H.; Yan, B.; Zhu, H. Predicting Nano−Bio Interactions by Integrating Nanoparticle Libraries and Quantitative Nanostructure Activity Relationship Modeling. ACS Nano 2017, 11, 12641−12649. (17) Zhou, H.; Mu, Q.; Gao, N.; Liu, A.; Xing, Y.; Gao, S.; Zhang, Q.; Qu, G.; Chen, Y.; Liu, G.; Zhang, B.; Yan, B. A Nano-Combinatorial Library Strategy for the Discovery of Nanotubes with Reduced
biomedical diagnosis, and other application scenarios of artificial intelligence. Deep learning can even bypass training a machine with existing nanomaterials data for predictive modeling. To date, researchers have already employed deep learning to perform chemical synthesis route planning,29 and deep learning has promise for implementation in decoding nano−bio interfaces in the near future. It should also be stressed that different algorithms possess their own scope of applications, including the discovery of new nanomaterials and the prediction of their properties. Improved computational simulations and artificial intelligence can profoundly facilitate the design and identification of optimal nano−bio interfaces and effectively narrow down the nanocombinatorial library for subsequent experimental validations. Identifying virtual nanocombinatorial variations and combination patterns out of synthetic, high-quality libraries enables rationally designing an on-demand library (predictive modeling) and systematically recognizing promising candidates for further experimental validation by multiscale bioevaluation. Given the massive nature of nano−bio interfaces when considering multiparametric nanocombinatorics and multiscale bioevaluation, this method will increase the efficiency and accuracy of identifying clinically effective nanomedicine formulations by prefiltering a smaller number of promising candidates.
CONCLUSIONS AND PROSPECTS Although the combinatorial methodology for optimizing nano− bio interfaces is still in its infancy, there is a rising call for using combinatorial nano−bio interfaces to generate comprehensive and comparable evaluations of the nanomaterials’ biological performances. Such uses offer a promising translation of nanomaterial formulations into clinical practice. We are optimistic that with the incorporation of extended multiparametric nanocombinatorial libraries, high-throughput multiscale bioevaluation, and robust computational modeling and artificial intelligence, combinatorial nano−bio interfaces and the accordingly optimized nanomaterials formulations will eventually be delivered to clinical patients in a safe, efficient, and ubiquitous way. AUTHOR INFORMATION Corresponding Author
*E-mail:
[email protected]. ORCID
Xiaodong Chen: 0000-0002-3312-1664 Author Contributions
The manuscript was conceptualized by X.C. and P.C. and written through contributions of P.C., X.Z., M.W., Y.-L.W., and X.C. All authors have given approval to the final version of the manuscript. Notes
The authors declare no competing financial interest.
ACKNOWLEDGMENTS X.C. acknowledges financial support from the National Research Foundation, Prime Minister’s Office, Singapore, under its NRF Investigatorship (NRF2016NRF-NRFI001-21). REFERENCES (1) Cai, P.; Leow, W. R.; Wang, X.; Wu, Y. L.; Chen, X. Programmable Nano−Bio Interfaces for Functional Biointegrated Devices. Adv. Mater. 2017, 29, 1605529. F
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