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Estimating Grass–Soil Bioconcentration of Munitions Compounds from Molecular Structure Tifany Lorena Torralba-Sanchez, Yuzhen Liang, and Dominic M. Di Toro Environ. Sci. Technol., Just Accepted Manuscript • DOI: 10.1021/acs.est.7b02572 • Publication Date (Web): 17 Aug 2017 Downloaded from http://pubs.acs.org on August 24, 2017
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Environmental Science & Technology
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ESTIMATING GRASS–SOIL
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BIOCONCENTRATION OF MUNITIONS
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COMPOUNDS FROM MOLECULAR
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STRUCTURE
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Tifany L. Torralba–Sanchez, Yuzhen Lianga, Dominic M. Di Toro*
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Department of Civil & Environmental Engineering, University of Delaware, Newark,
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Delaware, 19716
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a
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Technology, Guangzhou, Guangdong 510006, China
Current affiliation: School of Environment and Energy, South China University of
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*Corresponding author: Dominic M. Di Toro. E–mail address:
[email protected];
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phone number: (302) 831-4092
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Author contributions: This manuscript was written through contributions of all
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authors. All authors have given approval to the final version of the manuscript.
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Abstract
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A partitioning–based model is presented to estimate the bioconcentration of five
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munitions compounds and two munition–like compounds in grasses. The model uses
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polyparameter linear free energy relationships (pp–LFERs) to estimate the partition
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coefficients between soil organic carbon and interstitial water and between interstitial
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water and the plant cuticle, a lipid–like plant component. Inputs for the pp–LFERs are
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a set of numerical descriptors computed from molecular structure only that characterize
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the molecular properties that determine the interaction with soil organic carbon,
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interstitial water, and plant cuticle. The model is validated by predicting concentrations
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measured in the whole plant during independent uptake experiments with a root mean
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square error (log predicted plant concentration - log observed plant concentration) of
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0.429. This highlights the dominant role of partitioning between the exposure medium
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and the plant cuticle in the bioconcentration of these compounds. The pp–LFERs can
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be used to assess the environmental risk of munitions compounds and munition–like
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compounds using only their molecular structure as input.
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Keywords
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pp–LFER; Partitioning; Plant Uptake; Cuticle; Organic Carbon
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TOC/Abstract art
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Introduction Munitions compounds (MCs) are widely used in commercial and military 1-3
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activities, and are often released into the environment
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may bioconcentrate MCs. This causes concerns regarding the potential for
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environmental risk due to both direct toxicity and transference of these compounds to
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higher trophic levels. Hence the need to develop prediction models able to estimate the
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degree to which MCs are transferred from the ambient environment into plants, i.e., the
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extent of bioconcentration to be expected.
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. Organisms that are exposed
Studies proposing models to predict bioconcentration of organic compounds in 4-11
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plants from various growth media have been proposed
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account for transformation and degradation of the parent compound within the plant
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(e.g., metabolism, photodegradation), volatilization from leaves, and plant
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physiological processes such as growth and water transpiration 7, 11. However, in order
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to be applied to a specific compound, these models require parameter estimates that
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quantify each of these mechanisms for that compound. This limits their general
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applicability.
. Some of these models
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Models have also been formulated assuming that the uptake of nonionic organic
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compounds through the plant roots results in a steady state partitioning between the
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plant components and the soil
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between the plant and the external phase(s) where the organic compound is present (e.g.,
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soil), and it occurs along the plant transpiration stream
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can be modeled assuming an equilibrium between the soil solids, soil solution
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(interstitial water), and the plant.
10, 12
. The uptake is driven by concentration gradients
4, 5, 13
. In this way, the process
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The concentration of an organic compound available for plant root uptake in
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soils is that freely dissolved in the interstitial water (IW) 14, 15. This concentration is the
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result of soil solid–soil IW adsorption–desorption and is controlled by both the
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compound chemical properties and soil properties such as the mass fraction of organic
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carbon (𝑓𝑓𝑂𝑂𝑂𝑂 ) and clay size particles (𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶𝐶𝐶 ) 16-20. It has been shown for a wide variety of
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nonionic organic compounds that sorption to soil organic carbon (OC) is the dominant
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mechanism for 𝑓𝑓𝑂𝑂𝑂𝑂 greater than approximately 0.1 to 0.2 % 21-26. The soil OC–aqueous
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using a log–log correlation of KOC with the octanol–water partition coefficient, KOW.
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This assumes that n–octanol is a good surrogate for soil OC 27, 28. While these single–
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parameter quantitative structure-activity relationships (QSARs) have been shown to
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work reasonably well for mostly nonpolar hydrophobic organic chemicals 29, they have
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failed for more polar compounds, compounds that interact by hydrogen–bonding, and
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for highly hydrophobic compounds
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models of KOC that perform well for a wide range of compound classes has been
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identified 33.
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phase concentrations ratio is the partition coefficient, KOC, that is commonly estimated
30-32
. Consequently, a need for comprehensive
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Equilibrium sorption of organic contaminants by plant tissue components, such
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as carbohydrates and lipids, has also been measured and modeled 34-36. Similarly to the
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KOC models, n–octanol is commonly used as a surrogate for plant lipids. While practical,
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this approach has not been able to fully characterize the interactions between organic
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compounds and plant tissues 12, 34.
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An alternative approach is to use a polyparameter linear free energy relationship 37, 38
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(pp–LFER) model
. Unlike single–parameter KOW–based predictions, pp–LFERs
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predict partitioning by explicitly considering the contributions from different types of
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chemical interactions (e.g., hydrogen bonding, van der Waals forces) between the solute
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and the condensed phase (e.g., soil OC, plant lipids). Thus, pp–LFERs are able to more
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fully characterize the solvation properties of the condensed phase and the strength of its
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interactions with solutes relative to that of the aqueous phase.
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In order to achieve these results the estimation of pp–LFERs parameters require
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a large and chemically diverse training dataset of partition coefficients. In the case of
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plants, for example, the pp–LFERs require sufficient data to quantify both the solvation
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properties of a specific biomass component (e.g., lipids, carbohydrates, proteins) and
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the molecular properties of the organic contaminant of interest 9, 36, 39.
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The purpose of this work is to predict the bioconcentration of MCs and
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compounds with similar chemical structural functionalities (Table S1 in Supporting
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Information – SI), which are hereafter referred to as munition–like compounds (MLCs),
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in plants based on the partitioning between soil solids, IW, and plant. This is achieved
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using pp–LFERs for predicting the dissolved IW concentration in the soil using KOC,
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and for predicting the sorption to plant tissue using the partitioning between IW and
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plant cuticle, a lipid–like component. This procedure is validated by predicting
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concentrations in plant biomass compiled from published uptake assays in an
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independent dataset (95 observations). The pp–LFERs employed in this work use only
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molecular structure to compute the required model parameters. Therefore, they can also
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be used to evaluate the bioconcentration potential for proposed compounds early in the
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development stage of new MCs.
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Methodology
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Basis for modeling approach
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The model is designed to predict the bioconcentration of MCs for plants, more
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specifically, for grasses, in situations where estimates of the parameters required in more
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detailed uptake models, e.g., plant water fluxes, growth rates, and contaminant
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transformation/metabolism rates are not available. The model estimates the upper–
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bound of the concentration in the plant when exposed to the bioavailable MC in the soil
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IW using equilibrium partitioning (EqP). The EqP concept has been widely applied to
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assess the bioconcentration of organic compounds in organisms including fish, worms,
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and plants 10, 12, 40-46.
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In the case of grasses, the MCs available in the soil IW are transported in solution
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through the plant roots and along the plant transpiration stream. Eventually, as shown
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by Chiou et al. 10, nonionic organic compounds that are relatively water soluble, as is
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the case for MCs, reach equilibrium between the external and internal aqueous phases
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(see SI for further details). In the same vein, we have shown
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bioconcentration factors (BCFs) for MCs in barley reach steady state under constant
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exposure concentrations in sand culture experiments. The observed BCFs are
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comparable to plant–water partition coefficients (𝐾𝐾𝑃𝑃𝑃𝑃 ) measured by equilibrating
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experiments 47, 48. These results support the use of the EqP model to predict the uptake
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of MCs by grasses from IW.
47, 48
that the
sectioned barley biomass and the exposure solution used in the sand culture uptake
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Figure 1 illustrates MC partitioning between soil and plant components and
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water. When the root achieves equilibrium with the soil IW and simultaneously with the
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plant internal water, both the internal and external aqueous phases are at equilibrium. In
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this case, the root–water partitioning can be bypassed and the MC concentration in the
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plant internal water is assumed to be equal to that in the soil IW. Therefore, partitioning
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between soil OC and plant cuticle determines the MCs bioconcentration in grasses.
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Figure 1
Schematic diagram of the basis for the modeling approach: Equilibrium partitioning. Left–right arrows indicate partitioning of MC (or MLC) 𝑖𝑖 between two phases. 𝐾𝐾𝑖𝑖𝑂𝑂𝑂𝑂 = soil organic carbon–water partition coefficient of MC 𝑖𝑖 (Lwater kgOC-1), 𝐾𝐾𝑖𝑖𝑟𝑟𝑟𝑟𝑟𝑟𝑟𝑟 = root–water partition coefficient of MC 𝑖𝑖 (Lwater kgroot-1), and 𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 = plant cuticle–water partition coefficient of MC 𝑖𝑖 (Lwater kgcuticle-1).
Organic carbon is usually assumed to determine the mobility of MCs in soils 49-
139 140
51
141
fOC > 1 – 2% 25, 52, 53. This is larger than the usual boundary for hydrophobic compounds
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fOC = 0.1 – 0.2 % as discussed above 21-26.
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. It has been shown that OC is the dominant phase for partition of MCs in soils with
Plant cuticle is an extracellular hydrophobic membrane composed of 54, 55
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interconnected long–chain fatty acids and alkyls
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fruits, leaves, and stems
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hydrophobic membrane appears to be the principle site where sorption of MCs occurs.
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Contributions from plant carbohydrates were also examined before being excluded (see
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“Results and Discussion”).
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that coats plant organs such as
, and protects and waterproofs the plant surface. This
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Uptake through plant leaves from the atmosphere is not included in the model.
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The model might also be successfully applied to other similar nonionic organic
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compounds, however, the validation presented in this study is limited to MCs and MLCs
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only.
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Polyparameter Linear Free Energy Relationship (pp–LFER) Models
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The pp–LFER models for partitioning between soil OC and water, and between
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plant cuticle and water used in this work are based on the Abraham polyparameter model
156 157
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log 𝐾𝐾𝑆𝑆𝑆𝑆 = 𝑐𝑐 + 𝑒𝑒𝑒𝑒 + 𝑠𝑠𝑠𝑠 + 𝑎𝑎𝑎𝑎 + 𝑏𝑏𝑏𝑏 + 𝑣𝑣𝑣𝑣
(1)
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where KSW is the partition coefficient between a solvation phase (e.g., OC, plant cuticle)
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and water, and the right hand side of Eq. (1), are the parameters that account for the free
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energy contributions from different types of molecular interactions. The uppercase
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letters in Eq. (1) are solute (e.g., MC, MLC) descriptors and the lowercase letters
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quantify the complementary effect of the solvation phase on the corresponding
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interaction. The 𝑒𝑒𝑒𝑒 term represents the dispersion interactions that are predominant
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between nonpolar (no permanent multipole moments) molecules and that are not
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captured by the 𝑣𝑣𝑣𝑣 term. The 𝑠𝑠𝑠𝑠 term encompasses dipole–dipole or dipole–induced
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donation and acceptance of hydrogen bonds, which are bonds between certain types of
dipole plus some polarizability interactions. The 𝑎𝑎𝑎𝑎 and 𝑏𝑏𝑏𝑏 terms account for the
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hydrogen atoms and highly electronegative atoms in polar molecules. 𝑎𝑎𝑎𝑎 is solvent
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accounts for both the energy required for cavity formation and part of the London
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dispersion interactions, and 𝑐𝑐 is a regression constant 37, 57.
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acceptor (𝑎𝑎)–solute donor (𝐴𝐴) and 𝑏𝑏𝑏𝑏 is solvent donor (𝑏𝑏)–solute acceptor (𝐵𝐵). 𝑣𝑣𝑣𝑣
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Plant Cuticle–Water pp–LFER
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Platts and Abraham 9 fitted a pp–LFER model to a dataset of plant cuticle–water
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partition coefficients, KCut, for tomato (Lycopersicum esculentum Mill) cuticle, for 62
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volatile organic compounds (-0.77 < log KOW < 6.25) yielding
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log 𝐾𝐾𝐶𝐶𝐶𝐶𝐶𝐶 = −0.415 + 0.596𝐸𝐸 − 0.413𝑆𝑆 − 0.508𝐴𝐴 − 4.096𝐵𝐵 + 3.908𝑉𝑉
(2)
𝑅𝑅 2 = 0.981; SD = 0.236; F = 566. KCut = plant cuticle–water partition coefficient (Lwater
kgcuticle-1), 𝑅𝑅 2 = coefficient of determination, SD = regression standard deviation, and F
= Fischer’s F statistic. The magnitude of the terms in Eq. (2) indicate that cuticle is more competitive for solutes than water through 𝜋𝜋- and n- electron pairs dispersion interactions (𝑒𝑒 = 0.596 > 0), and via cavity formation in the cuticle that requires much
less free energy than in water (𝑣𝑣 = 3.908 > 0). This model also indicates that the
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cuticle is less polar/polarizable (𝑠𝑠 = −0.413 < 0) and accepts hydrogen bonds (𝑎𝑎 =
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−0.508 < 0) and donates hydrogen bonds (𝑏𝑏 = −4.096 < 0) much less readily than water 9.
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In order to broaden the chemical and plant species diversity and to incorporate
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MCs and MLCs functionalities, such as aromatic compounds with multiple C-NO2
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groups and non-aromatic cyclic structures with N-NO2 bonds (SI Table S1), into the
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training set used by Platts and Abraham 9, additional KCut data (SI Table S5) were
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collected and included in deriving the plant cuticle–water pp–LFER. Sources for these
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data are described below.
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Since new chemicals and new plant cuticle data were added to the dataset, it was
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necessary that the solute parameters (uppercase letters in Eq. (1)) be obtained from
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consistent sources. Therefore, three different sources for solute descriptors were
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compared (SI Table S7 to Table S10): (i) Absolv estimated Abraham Parameters
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(Absolv–AP) from the Absolv software module of ACD/PhysChem Suite
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Experimentally derived Abraham Parameters (Exp–AP) from Liang et al.
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UFZ–LSER database 60, and (iii) Quantum Chemically estimated Abraham Parameters
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(QCAP) from Liang 61, 62. These three sources were selected because Absolv–AP have
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been widely used and are recommended by Platts and Abraham
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structure, and Exp–AP and QCAP have been shown to successfully predict KSW for a
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wide variety of organic compounds including MCs and MLCs
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plant cuticle–water pp–LFERs were obtained using a multiple linear regression (MLR)
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with Absolv–AP, Exp–AP, and QCAP as the solute parameters and the full KCut dataset
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(SI Table S5) as the independent variable. The MLRs were performed using the lm
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function of the R software for statistical computing 63.
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9
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, (ii)
and the
for any organic
59, 61, 62
. Three updated
Soil Organic Carbon–Water pp–LFER KOC ’s were predicted using the pp–LFER developed by Kipka and Di Toro 64 log 𝐾𝐾𝑂𝑂𝐶𝐶 = 0.670 (±0.088) + 1.075 (±0.061)𝐸𝐸 − 0.277 (±0.083)𝑆𝑆 − 0.363 (±0.100)𝐴𝐴 − 1.697 (±0.085)𝐵𝐵 + 1.468 (±0.077)𝑉𝑉
(3)
for 440 compounds; RMSE = 0.48. KOC = soil organic carbon–water partition
coefficient (Lwater kgOC-1), values in parenthesis = ± the standard error, and RMSE =
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root mean square error of prediction. This model was built using a large and chemically
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diverse dataset of nonionic organic compounds with Absolv–AP for the solute
214
parameters. A comparison of the performance of this model relative to other available
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pp–LFERs to predict independent log KOC literature observations for MCs is presented
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in the SI. The model by Kipka and Di Toro 64 yielded similar or smaller RMSEs than
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those by the other pp-LFERs using either experimental or estimated solute descriptors
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(see SI). In general, experimental descriptors are more accurate than estimated ones to
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calibrate pp–LFERs. In this manuscript, however, the aim is to illustrate that if
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descriptors are computed with versatile and robust methods (e.g., quantum chemical
221
computations), they can be used for the calibration of pp–LFERs obtaining similar
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estimation errors than those with experimental descriptors, as shown below in Results
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and Discussion. Moreover, the use of estimated descriptors expands the applicability of
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pp–LFERs to large collections of compounds or proposed MCs early in the development
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stage, for which no data is available. These are scenarios where the experimental
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determination of descriptors is limited by time and feasibility constrains.
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The solvent parameters in Eq. (3) reveal that the soil OC phase has similar
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solvation capabilities to those shown by plant cuticle in Eq. (2). The solute descriptors
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used to apply Eq. (3) for the prediction of concentrations in the plants were the
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appropriate QCAP reported by Liang 61, 62 (SI Table S14).
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Experimental Data
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Two types of experimental data were collected from the literature: (i) reported
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KCut values, and (ii) measurements of concentrations in plant biomass made during
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uptake assays where plants were exposed to MCs, or MLCs, in the growth medium. The
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former dataset was added to the training set used by Platts and Abraham 9, while the
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latter served to validate the partitioning–based bioconcentration model. The MCs,
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MLCs, and plant species included in the datasets are listed in Table 1.
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Table 1
Munitions Compounds (MCs), Munitions–Like Compounds (MLCs), and plant species included in the datasets. Abbreviation
Name MCs and MLCsa
TNT
2,4,6-trinitrotoluene
2,4-DNT
2,4-dinitrotoluene
2,4-DNAN
2,4-dinitroanisole
RDX
hexahydro-1,3,5-trinitro-1,3,5-triazine
HMX
octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine
4-NAN
4-nitroanisole
2-M-5-NPYNE
2-methoxy-5-nitropyridine
2,5-DM-4-NANE
2,5-dimethoxy-4-nitroaniline Plant Species: KCut datasetb
L. esculentum
Lycopersicum esculentum Mill
F. elastica
Ficus elastica Roxb. var. decora
C. annuum
Capiscum annuum L.
C. aurantium
Citrus aurantium L.
P. laurocerasus
Prunus laurocerasus L.
G. biloba
Ginkgo biloba L.
J. regia
Juglans regia L.
S. lycopersicum
Solanum lycopersicum
M. domestica
Malus domestica
S. tuberosum
Solanum tuberosum
V. heyneana
Vitis heyneana Roem. et Schult
L. multiflorum
Lolium multiflorum Lam.
L. arundinaceium
Lolium arundinaceium
F. rubra
Festuca rubra L.
S. oleracea
Spinacia oleracea
H. vulgarec
Hordeum vulgare L. Plant Species: Uptake datasetd
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C. esculentus
Cyperus esculentus
L. perenne
Lolium perenne
M. sativa
Medicago sativa
Z. mays
Zea mays
G. max
Glycine max
S. Sudanese
Sorghum Sudanese
T. aestivum
Triticum aestivum
P. vulgaris
Phaseolus vulgaris
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B. rapa Brassica rapa Further details including chemical properties are listed in SI Table S1 b As reported in corresponding source(s). Data in SI Table S5 c Also in uptake dataset d As reported in corresponding source(s). Data in SI Table S13 a
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Plant Cuticle–Water Partition Coefficients (KCut) Data
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Partition coefficients between plant cuticle and water are commonly determined
244
by individually equilibrating either isolated cuticular membranes (CM) or cuticle
245
matrices (MX, the dewaxed CM)
246
compound (𝑖𝑖) and calculating the cuticle partition coefficient
56, 65, 66
247
248
𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 =
with an aqueous solution of an organic
𝐶𝐶𝑖𝑖𝐶𝐶𝐶𝐶 𝑜𝑜𝑜𝑜 𝑀𝑀𝑀𝑀 𝐶𝐶𝑖𝑖𝑊𝑊𝑊𝑊𝑊𝑊𝑊𝑊𝑊𝑊
(4)
where 𝐶𝐶𝑖𝑖𝐶𝐶𝐶𝐶 𝑜𝑜𝑜𝑜 𝑀𝑀𝑀𝑀 = concentration of compound 𝑖𝑖 in CM or MX (mg kgdwt-1; dwt: dry
250
weight), and 𝐶𝐶𝑖𝑖𝑊𝑊𝑊𝑊𝑊𝑊𝑊𝑊𝑊𝑊 = concentration of compound 𝑖𝑖 in the water phase (mg L-1). The
251
of epicuticular wax in the cuticle component proved to have no significant effect on the
252
resulting KCut (SI Table S6) 67.
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KCut dataset (SI Table S5) includes values obtained with CM or MX since the presence
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In addition to KCut from isolated cuticle components, values from experiments
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performed with whole plant biomass were also included after normalization of the
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plant–water partition coefficient by the mass fraction of cuticle
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𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 =
𝐾𝐾𝑖𝑖𝑃𝑃𝑃𝑃 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶
(5)
where 𝐾𝐾𝑖𝑖𝑃𝑃𝑃𝑃 = plant–water partition coefficient of compound 𝑖𝑖 (Lwater kgdwt plant-1) and
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𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 = dry weight fraction of cuticle in the plant (kgcuticle kgdwt plant-1). A total of 143
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pp–LFER training set (SI Table S5). The KCut for compounds containing dissociable
261
groups were either from experiments performed in solutions buffered below the pKa of
262
the compound or had been corrected for the degree of dissociation using acid
263
dissociation constants as detailed in Kerler and Schonherr 68. The corrected KCut were 9
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observations for 3 compounds in the training set.
258
265
experimental KCut for undissociated organic compounds were compiled for the cuticle
Data from Plant Uptake Assays
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A dataset was compiled from measurements reported in published uptake assays
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with grasses and other plants belonging to closely related families exposed to MCs, or
268
MLCs, in the growth medium (SI Table S13). In addition to experiments performed in
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spiked or contaminated field soil (hereafter referred to as "soil"), assays using either
270
coarse quartz sand (99%, 0.85–1.27 mm effective diameter particles, hereafter referred
271
to as "sand") or aqueous solutions as the growth medium were also included in the
272
dataset. The inclusion of these datasets had two purposes: (i) compare the predictions
273
relative to those in soil exposures, and (ii) test only the plant cuticle–water pp–LFER
274
without the need for a soil OC–water pp–LFER. The full dataset includes the
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concentration in the plant, concentration in the growth medium, exposure time, and dry
276
weight fraction of OC in the soil when applicable (SI Table S13).
277
Concentrations in the plant were for the whole plant or only for the aboveground
278
plant parts when available; measurements in fruits or flowers (e.g., corn kernels or
279
tassels) were not included. Concentrations below reported analytical quantification
280
limits or without clarification on whether they were expressed on a dry or fresh weight
281
basis were excluded. Data from studies not reporting either the soil OC or organic matter
282
content were also excluded (excluded data in SI Table S18).
283 284
Estimation of Concentrations in Plants Observed in Independent Uptake Assays
285
Concentrations in grasses and closely related plants reported in published uptake
286
assays were predicted using models of the appropriate partition coefficients. The
287
concentration of MCs and MLCs available for plant root uptake in soil growth medium
288 289
was estimated using
290 291 292 293 294
𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼 =
𝐶𝐶𝑖𝑖𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝐶𝐶𝑖𝑖 = 𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝐾𝐾𝑖𝑖𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝐾𝐾𝑖𝑖𝑂𝑂𝑂𝑂 𝑓𝑓𝑂𝑂𝑂𝑂
(6)
where 𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼 = concentration of MC (or MLC) 𝑖𝑖 in the growth medium interstitial water
(mg L-1), 𝐶𝐶𝑖𝑖𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 = concentration of MC 𝑖𝑖 in the soil solids (mg kgdwt-1), 𝐾𝐾𝑖𝑖𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 =
soil–water partition coefficient of MC 𝑖𝑖 (Lwater kgdwt soil-1), and 𝑓𝑓𝑂𝑂𝑂𝑂 = dry weight fraction of organic carbon in the soil (kgOC kgdwt soil-1).
Values for 𝐶𝐶𝑖𝑖𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 were those reported by the sources as the concentrations
295
at the beginning of the exposure or a steady state concentration when available. Values
296
for 𝑓𝑓𝑂𝑂𝑂𝑂 were also obtained from the sources. A factor of 0.50 was used to convert soil
297
organic matter content (𝑓𝑓𝑂𝑂𝑂𝑂 ) to 𝑓𝑓𝑂𝑂𝑂𝑂 (i.e., 𝑓𝑓𝑂𝑂𝑂𝑂 = 0.5 𝑓𝑓𝑂𝑂𝑂𝑂 ) when needed 69. 𝐾𝐾𝑖𝑖𝑂𝑂𝑂𝑂 ’s were 16
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estimated using the pp–LFER in Eq. (3) described previously and the appropriate QCAP
299
from Liang 61, 62 (SI Table S14).
300 301
302
The concentration of MCs and MLCs in plant biomass was estimated using 𝐶𝐶𝑖𝑖𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃 = 𝐾𝐾𝑖𝑖𝑃𝑃𝑃𝑃 𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼 = 𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼
(7)
where 𝐶𝐶𝑖𝑖𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃 = concentration of MC 𝑖𝑖 in the plant biomass (mg kgdwt-1). 𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼 directly
303
observed in experiments performed in either sand or aqueous solutions, or predicted
304 305
using Eq. (6) for soil experiments. Due to the scarcity of 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 values for the species in
306
abundant plant families in the dataset: 0.18 and 0.21 kg kgdwt-1 for Poaceae and
the uptake assays, a single 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 from the literature was used for each of the most
308
Fabaceae, respectively (SI Table S15). An average of these two 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 values (0.20 kg
309
were estimated using the pp–LFER in Eq. (8) described below and the QCAP from
310
Liang 61, 62 (SI Table S14).
311
Results and Discussion
307
312
kgdwt-1) was used for the species belonging to the other closely related families. 𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 ’s
Plant Cuticle–Water pp–LFER
313
The predicted KCut using Eq. (2) versus observed KCut are shown in Figure 2 (SI
314
Table S7 to Table S9). The accuracy of the predictions varied with the source of the
315
Abraham solute descriptors. The predicted KCut for the nitramine MCs, RDX and HMX,
316
using Absolv–AP were seven orders of magnitude smaller than the observed KCut
317
(Figure 2A). A reason for these large underpredictions might be the absence of the
318
nitramine (N-NO2) functional group in the Absolv fragment descriptors set 70. Missing
319
fragments has been identified as a major drawback for the group contribution approach
320
in the estimation of solute descriptors 61, 62, 71. N-NO2 is a highly electronegative group
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and it increases the potential reactive sites of these MCs
322
descriptor needs to be included.
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. Therefore the fragment
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Figure 2
pp–LFER–predicted KCut versus observed KCut for organic compounds (SI Table S5 and Table S7 to Table S9). Predictions made using the pp–LFER model from Platts and Abraham 9, Eq. (2), for the full KCut dataset collected from the literature. Solute descriptors, uppercase letters for Eq. (2), are: (A) Absolv–AP 58; (B) Exp–AP from either Liang et al. 59 or the UFZ– LSER database 60, and Absolv–AP when Exp–AP were not available; and (C) Adjusted QCAP 61, 62. RMSE: root mean square error of prediction (log predicted - log observed) for all compounds included in the full KCut dataset (SI Table S5). The RMSEs for only MCs and MLCs were = (A) 3.154; (B) 0.544; and (C) 0.507. The solid line indicates the best agreement (unity), dashed lines are spaced at 1 log unit from unity.
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335
The predictions for RDX and HMX improved by more than six orders of
336
magnitude when using Exp–AP (Figure 2B) and the overall RMSE for all compounds
337
decreased from RMSE = 1.167 (Figure 2A) to RMSE = 0.382 (Figure 2B). The
338
experimental derivation of molecular properties generally results in high–quality solute
339
descriptors. However, its application to large collections of compounds or proposed
340
MCs early in the development stage, for which no data is available, is limited by time
341
and feasibility constrains. Consequently, an alternative method for the determination of
342
solute descriptors that depends only on molecular structure was also tested.
343
QCAP’s are derived from quantum chemically computed solvent–water
344
partition coefficients and molecular polarizability 61, 62. The solute descriptors: 𝑆𝑆, 𝐴𝐴, and
346
𝐵𝐵 are simultaneously estimated using 65 quantum chemically computed solvent–water
347
partition coefficients obtained from a continuum solvation model. 𝐸𝐸 and 𝑉𝑉 are
independently obtained from quantum mechanical estimated molecular polarizability
348
and molecular volume.
349
solvent–water partitioning data. Therefore, they are incompatible with the solvent
350
parameters in existing pp–LFERs. This inconsistency is corrected by adjusting QCAP
351
using large datasets of Exp–AP (details in Liang 61, 62). These adjusted QCAP were used
352
for all the compounds to predict the observed KCut in Figure 2C. The RMSE = 0.494,
353
which is competitive relative to that using Exp–AP.
345
354
61, 62, 73
. QCAP are not generated using only experimental
Plant Cuticle–Water pp–LFER including MCs and MLCs
355
The dataset employed by Platts and Abraham 9 to develop the KCut pp–LFER in
356
Eq. (2), and used to make the predictions in Figure 2, did not contain MCs or MLCs.
357
Therefore, pp–LFERs were developed using the expanded KCut dataset compiled from
358
the literature, which also includes a more heterogeneous group of plant species. The
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results are shown in Figure 3 and the pp–LFERs are listed in SI Table S11. The same
360
solute descriptors were used as in Figure 2A and B. However, for Figure 3C, QCAP
361
were used instead of the adjusted QCAP since QCAP have been found to be superior
362
when a new pp–LFER is being created 61, 62.
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Figure 3
pp–LFER–fitted KCut versus observed KCut for organic compounds (SI Table S5, Table S7, Table S8, and Table S10). Calculations made using the general pp–LFER, Eq. (1), fitted to the full KCut dataset collected from the literature. Solute descriptors, uppercase letters for Eq. (1), are: (A) Absolv–AP 58; (B) Exp–AP from either Liang et al. 59 or the UFZ–LSER database 60, and Absolv–AP when Exp–AP were not available; and (C) QCAP 61, 62. RMSE: root mean square error of prediction (log fitted - log observed) for all compounds included in the full KCut dataset (SI Table S5). The RMSEs for only MCs and MLCs were = (A) 1.261; (B) 0.478; and (C) 0.421. The solid line indicates the best agreement (unity), dashed lines are spaced at 1 log unit from unity.
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The KCut pp–LFER obtained using Absolv–AP improved the overall RMSE
376
(1.167 to 0.778; Figure 2A and Figure 3A, respectively), but misfits for many of the
377
compounds resulted (Figure 3A). The KCut pp–LFER obtained using Exp–AP slightly
378
changed the already good overall fit (RMSE = 0.382 to 0.332; Figure 2B and Figure 3B,
379
respectively).
380
A good fit was also obtained when QCAP were used for all the compounds. The
381
resulting KCut pp–LFER satisfactorily captured the overall variations in the dataset
382
(Figure 3C) yielding a RMSE = 0.386. The resulting plant cuticle–water pp–LFER built
383 384
using QCAP is
385
log 𝐾𝐾𝐶𝐶𝐶𝐶𝐶𝐶 = −0.593 (±0.098) + 0.433 (±0.086)𝐸𝐸 + 0.900 (±0.164)𝑆𝑆 − 0.587 (±0.100)𝐴𝐴 − 5.409 (±0.253)𝐵𝐵 + 3.442 (±0.203)𝑉𝑉
(8)
2 using 77 compounds; N = 143 data points; RMSE = 0.386; 𝑅𝑅𝐴𝐴𝐴𝐴𝐴𝐴. = 0.939; SE = 0.394;
387
2 𝐹𝐹 = 437.6. Values in parenthesis = ± the standard error, 𝑅𝑅𝐴𝐴𝐴𝐴𝐴𝐴. = adjusted 𝑅𝑅 2 and SE =
388
The system parameters in Eq. (8), which are the lowercase variables in Eq. (1),
389
quantify the extent to which compounds partition to cuticle relative to water. The signs
390
of the system parameters in Eq. (8) are consistent with those obtained by Platts and
391
Abraham
392
term, 𝑠𝑠, which is negative 𝑠𝑠 = −0.413 in Eq. (2) and positive 𝑠𝑠 = 0.900 in Eq. (8). The
386
regression residual standard error.
9
(Eq. (2)) for all molecular interactions except the dipolarity/polarizability
394
𝑠𝑠 > 0 in Eq. (8) suggests that cuticle is a stronger solvation phase than water when
395
water is usually stronger than many environmental and biological phases through
396
polarizability interactions
393
interacting with polar/polarizable solutes, which is an unexpected result. This is because
74
, i.e., 𝑠𝑠 < 0. However, the ability of a pp–LFER to
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accurately characterize the properties of a solvation phase such as cuticle, largely relies
398
on the quality and diversity of the solute descriptors used in its calibration dataset 74.
399
While the solute descriptors used in Platts and Abraham 9 (Absolv–AP and/or
400
Exp–AP) produced an excellent agreement to their observed values, the training set used
401
in Eq. (8) covers a considerably wider descriptor space in 𝐸𝐸 and 𝑆𝑆 values than that by
402
Eq. (2) (range 𝐸𝐸: 4.29 vs. 3.26; and range 𝑆𝑆: 2.33 vs. 1.76; respectively. SI Table S12).
404
The high end of the 𝑆𝑆 range for Eq. (8) comes largely from the MCs and MLCs. These
405
which can behave through both specific and nonspecific molecular interactions 75. The
406 407
𝑠𝑠 = 0.900 (Eq. (8)) suggests that the cuticle system has a higher ability than water to
408
the partition coefficient to increase. This might be due in part to the polar characteristics
409
of the fatty acids in the cutin and cutan components of this lipid–like plant component
410
54, 55, 76
411
target lipid model (TLM) for the prediction of acute toxicity in aquatic organisms
412
which uses lipid as the site of action for the sorption of contaminants.
403
compounds revealed the strength of the cuticle interaction with more polar solutes,
attract polar solutes through dipolarity/polarizability–type interactions and hence cause
. It is interesting to note that a positive 𝑠𝑠 is also found in the pp–LFER of the 77
,
413
Besides a larger array of plant species in the calibration set, the good quality and
414
wider diversity of solute descriptors supported the choice of Eq. (8) over Eq. (2) for the
415
prediction of concentrations in plants from published uptake assays.
416 417
Estimation of Concentrations in Plants Observed in Independent Uptake Assays
418
Predictions were made based on the partitioning between soil OC, IW, and plant
419
cuticle, as described previously. The KOC model, Eq. (3), was used to estimate the
420
concentration of the MC, or MLC, in the soil IW (i.e., exposure concentration), and the
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KCut model, Eq. (8), was used to predict the corresponding concentration in the plant
422
biomass. The final equation used to predict the plant concentrations is Eq. (9) in Table
423
2, which contains the equations that comprise the bioconcentration model. An example
424
is presented in SI Table S16. Predicted versus observed concentrations in plants for five
425
MCs and two MLCs are shown in Figure 4 (SI Table S13 and Table S17).
426 427
Table 2
Equations for the prediction of concentrations in plants exposed to MCs, or MLCs, in soil and sand or water culture.
A partitioning–based plant bioconcentration modela: 𝐶𝐶𝑖𝑖𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃 =
Var.
𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 𝐶𝐶𝑖𝑖𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝐾𝐾𝑖𝑖𝑂𝑂𝑂𝑂 𝑓𝑓𝑂𝑂𝑂𝑂 Equation
𝐾𝐾𝑖𝑖𝑂𝑂𝑂𝑂 : log 𝐾𝐾𝑂𝑂𝑂𝑂 = 0.670 + 1.075𝐸𝐸 − 0.277𝑆𝑆 − 0.363𝐴𝐴 − 1.697𝐵𝐵 + 1.468𝑉𝑉 𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼 : 𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼 =
𝐶𝐶𝑖𝑖𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝐾𝐾𝑖𝑖𝑂𝑂𝑂𝑂 𝑓𝑓𝑂𝑂𝑂𝑂
(9) # (3) (6)
𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 : log 𝐾𝐾𝐶𝐶𝐶𝐶𝐶𝐶 = −0.593 + 0.433𝐸𝐸 + 0.900𝑆𝑆 − 0.587𝐴𝐴 − 5.409𝐵𝐵 + 3.442𝑉𝑉 (8) 𝐶𝐶𝑖𝑖𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃 : 𝐶𝐶𝑖𝑖𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃 = 𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼
(7)
Var.: Variables; 𝑖𝑖: MC, or MLC, of interest; 𝐶𝐶𝑖𝑖𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃𝑃 : concentration of compound 𝑖𝑖 in the plant biomass (mg kgdwt-1); 𝐾𝐾𝑖𝑖𝐶𝐶𝐶𝐶𝐶𝐶 : plant cuticle–water partition coefficient of 𝑖𝑖 (Lwater kgcuticle-1); 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 : dry weight fraction of cuticle in the plant (kgcuticle kgdwt plant-1); 𝐶𝐶𝑖𝑖𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆 𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑆𝑠𝑠 : concentration of 𝑖𝑖 in the soil solids (mg kgdwt-1); 𝐾𝐾𝑖𝑖𝑂𝑂𝑂𝑂 : soil organic carbon– water partition coefficient of 𝑖𝑖 (Lwater kgOC-1); 𝑓𝑓𝑂𝑂𝑂𝑂 : dry weight fraction of organic carbon in the soil (kgOC kgdwt soil-1); 𝐸𝐸, 𝑆𝑆, 𝐴𝐴, 𝐵𝐵, and 𝑉𝑉: solute descriptors for 𝑖𝑖 (SI Table S14); 𝐶𝐶𝑖𝑖𝐼𝐼𝐼𝐼 : concentration of 𝑖𝑖 in the growth medium interstitial water (IW) (mg L-1) a
428 429
The three panels in Figure 4 contain the same predicted and observed
concentrations in the plant but with different coding by (A) compound, (B) growth
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430
medium, and (C) plant species. These are the main factors that affect the performance
431
of the model. Measured concentrations in plants range about four orders of magnitude
432
for seven different compounds including nitroaromatic, nitramines, and nitropyridines.
433
They were predicted within an order of magnitude (Figure 4A). No bias in the
434
predictions was observed for either MCs or MLCs.
435
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Figure 4
Predicted concentrations in the plant versus observed values from published uptake studies (Table 2, and SI Table S13 and Table S17). Color coding assigned based on: (A) MCs and MLCs (Table 1), (B) growth medium, and (C) plant species. Unfilled symbols indicate that the predicted concentration in the interstitial water (using Eq. (6)) was replaced by the corresponding MC aqueous solubility as the predicted concentration in the interstitial water exceeded solubility limits. The border color for the unfilled symbols corresponds to the color identification in each panel legend. Root mean square error of prediction (log predicted - log observed), excluding predictions bounded at aqueous solubility, RMSE = 0.429. The solid line indicates the best agreement (unity), dashed lines are spaced at 1 log unit from unity.
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449
The data included plant uptake assays carried out in three different growth
450
media: soil, sand, and water (Figure 4B). The accuracy of the predictions increased in
451
the order of soil < sand < water as shown by the logarithmic residuals ranging (minimum
452
to maximum) from -0.897 to 1.249, -0.459 to 0.837, and -0.215 to 0.612, respectively
453
(SI Table S17). This can be due to both the complexity of the experimental procedure
454
increasing in the order of water < sand < soil and the inclusion of a KOC model to make
455
the estimations from soil, which contributes to a larger prediction uncertainty relative
456
to that for uptake assays in water or in sand. A comparison of the performance of the
457
bioconcentration model (Eq. (9)) using log KOC pp-LFERs other than the one by Kipka
458
and Di Toro 64 (Eq. (3)) is presented in the SI. The RMSEs yielded using Eq. (3) were
459
similar or smaller than those using the other pp-LFERs with either experimental or
460
estimated solute descriptors (see SI for details).
461
Predictions made using only the KCut pp–LFER (Eq. (8)), i.e., those for
462
experiments performed with sand and water as the growth medium, produced RMSEs
463
of 0.527 and 0.214, respectively. This indicates that the KCut pp–LFER model alone is
464
capable of estimating within a reasonable uncertainty the bioconcentration of
465
compounds that are available for plant root uptake using only the measured
466 467
concentration in the water (IW in the case of sand), 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 , and QCAP.
468
examined before being excluded from the model. A pp–LFER was built using literature
469
data for partition to cellulose and starch from water. Carbohydrate–water partition
470
coefficients, KCh, for MCs and MLCs were small (-1.016 < (log KCh) < -0.470) and
471
accounted for maximum 3.3% of the KPW even assuming carbohydrates were the
472
predominant component of the plant. The overall estimation error of the model changed
Contribution from plant carbohydrates to the bioconcentration of MCs was also
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only by 0.5% when carbohydrates were included as a sorption compartment (see SI for
474
details).
475
It is difficult to maintain a nearly constant exposure concentration in soils, unlike
476
in water or sand due to both the degradation of the parent compound and the
477
inhomogeneous distribution of the compound in the soil. Unfortunately, for the majority
478
of the data in Figure 4 the concentrations in the growth medium were not monitored or
479
prevented from significantly fluctuating. Only the initial concentrations in the growth
480
medium were available (SI Table S13). The loss of the parent compound led to the
481
overestimation of some of the resulting plant concentrations (Figure 4A and B),
482
especially for compounds like TNT which have been shown to be readily transformed
483
20, 78
.
484
In order to circumvent the problem of significant compound degradation, large
485
amounts of chemicals are usually applied to soil as the initial exposure treatment during
486
uptake assays (SI Table S13). However, for these soil treatments (unfilled symbols in
487
Figure 4), the concentration in the IW predicted with the KOC pp-LFER exceeded the
488
aqueous solubility of the compound. Hence, for these cases, the prediction of the
489
concentration in the plant (Eq. (7)) was made using the aqueous solubility of the
490
compound as the exposure concentration. This yielded single predictions (the horizontal
491
trends in Figure 4), especially for MCs with low aqueous solubilities, such as RDX and
492
HMX (SI Table S1).
493
Figure 4C shows the ten plant species in the dataset. No bias in the quality of
494
predictions was observed as a function of plant species. This indicates that using a
495
couple 𝑓𝑓𝐶𝐶𝐶𝐶𝐶𝐶 values representing the predominant families in the dataset is not an
496
unreasonable approximation.
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497
Despite the lack of uniformity in the plant concentration data and some
498
uncertainty in the soil concentration over the duration of the exposure, the prediction of
499
concentrations from independent uptake assays for all three growth media using Eq. (9)
500
yielded a RMSE = 0.429 (excluding predictions at aqueous solubility). This RMSE is
501
competitive relative to that produced by a detailed dynamic model based on
502
physiological plant uptake by Trapp and Eggen 11, RMSE = 0.578 (calculated using data
503
in their Figure 2). Their model predicts concentrations in plants, such as barley and
504
carrot (leaves, steams, and/or roots; excluding fruits for comparison to this work), from
505
greenhouse experiments for nonionic polar organic compounds. Unfortunately,
506
comparison to the other models for bioconcentration of organic compounds in plants
507
cited previously was not possible as a validation to an independent dataset is often not
508
presented or it is performed as a cross–validation 8.
509
Implications
510
Bioconcentration of MCs and MLCs in grasses can be estimated based on the
511
partitioning between the growth medium solids, IW, and plant. Partitioning between soil
512
OC and IW, and between IW and plant cuticle for MCs, MLCs, and other organic
513
compounds can be predicted with pp–LFERs. Smaller estimation errors (RMSE =
514
0.386) for the KCut pp–LFER are obtained using QCAP as the solute descriptors for all
515
compounds relative to using Absolv–AP or Exp–AP. The superior quality of the QCAP
516
and the diversity of the KCut solute training dataset, enable the better characterization of
517
the solvation properties of the plant cuticle.
518
A demonstration of the prediction capabilities of the partitioning–based model
519
to estimate concentrations from independent plant uptake assays provides evidence of
520
the model’s usefulness and practicality. More accurate predictions are obtained for the
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estimation of plant concentrations from assays performed in sand or water than those in
522
complex soils.
523
The results presented suggest that the partitioning–based plant bioconcentration
524
model proposed (Eq. (9)), which utilizes quantum chemically computed Abraham
525
parameters (QCAP) and two pp–LFERs, can be used to predict the MCs concentrations
526
in grasses from molecular structure only.
527
Acknowledgements
528
The authors thank Prof. Stanley Sandler in the Department of Chemical and
529
Biomolecular Engineering at the University of Delaware for the use of his research
530
group’s quantum–based solvation model, COSMO–SAC 2013. This project was funded
531
by the Strategic Environmental Research and Development Program (SERDP), Project
532
ER-1734.
533
Supporting Information Available
534
Selected characteristics and physicochemical properties of the MCs and MLCs.
535
Details on the equilibrium assumption for transport of organic compounds from soil into
536
plants. Comparative analysis for the performance of the log KOC pp–LFER chosen
537
relative to others available. Literature data collected and solute descriptors used for the
538
calibration and validation of the proposed models. Details on the results obtained with
539
the inclusion of carbohydrates in the bioconcentration model.
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